Wall clock time and date at job start Tue Mar 31 2020 22:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.87449 * 2 1 4 4 C 1.54318 * 109.88589 * 121.01704 * 2 1 3 5 5 H 1.09003 * 110.71847 * 23.25059 * 4 2 1 6 6 N 1.46501 * 110.72340 * 259.97553 * 4 2 1 7 7 C 1.36940 * 120.00109 * 154.99771 * 6 4 2 8 8 H 1.08001 * 119.99911 * 0.02562 * 7 6 4 9 9 C 1.38808 * 119.99748 * 179.97438 * 7 6 4 10 10 N 1.31618 * 120.00176 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99856 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47033 * 90.00309 * 11 9 7 13 13 H 1.48498 * 109.47181 * 210.00334 * 11 9 7 14 14 H 1.48501 * 109.47134 * 330.00288 * 11 9 7 15 15 C 1.55158 * 102.94590 * 141.60808 * 4 2 1 16 16 C 1.54914 * 101.58192 * 324.50345 * 15 4 2 17 17 N 1.47029 * 109.88442 * 238.82843 * 2 1 3 18 18 C 1.34777 * 125.64703 * 61.58893 * 17 2 1 19 19 O 1.21285 * 119.99926 * 0.02562 * 18 17 2 20 20 C 1.50697 * 119.99771 * 180.02562 * 18 17 2 21 21 C 1.50697 * 109.46945 * 180.02562 * 20 18 17 22 22 C 1.36137 * 120.17204 * 265.00335 * 21 20 18 23 23 C 1.39330 * 120.98375 * 180.02562 * 22 21 20 24 24 C 1.36123 * 120.99742 * 359.97438 * 23 22 21 25 25 C 1.40500 * 119.64963 * 0.02562 * 24 23 22 26 26 C 1.40546 * 121.29233 * 179.97438 * 25 24 23 27 27 C 1.36089 * 119.65787 * 180.02562 * 26 25 24 28 28 C 1.39380 * 120.99159 * 0.02562 * 27 26 25 29 29 C 1.36092 * 120.99223 * 0.02562 * 28 27 26 30 30 C 1.40506 * 120.17820 * 84.72665 * 21 20 18 31 31 H 1.09002 * 109.47153 * 298.98055 * 1 2 3 32 32 H 1.09001 * 109.46832 * 178.98246 * 1 2 3 33 33 H 1.09004 * 109.47261 * 58.98228 * 1 2 3 34 34 H 0.96997 * 119.99273 * 334.99826 * 6 4 2 35 35 H 0.97000 * 120.00003 * 180.02562 * 10 9 7 36 36 H 1.09003 * 111.00366 * 82.57268 * 15 4 2 37 37 H 1.08995 * 111.00914 * 206.38778 * 15 4 2 38 38 H 1.08999 * 110.36787 * 155.84172 * 16 15 4 39 39 H 1.08999 * 110.36029 * 278.05870 * 16 15 4 40 40 H 1.09001 * 109.47682 * 300.00397 * 20 18 17 41 41 H 1.09003 * 109.46941 * 60.00441 * 20 18 17 42 42 H 1.07998 * 119.50769 * 359.97406 * 22 21 20 43 43 H 1.08007 * 119.49747 * 179.97438 * 23 22 21 44 44 H 1.07999 * 120.17723 * 179.97438 * 24 23 22 45 45 H 1.08006 * 120.17389 * 359.97438 * 26 25 24 46 46 H 1.08005 * 119.50441 * 179.97438 * 27 26 25 47 47 H 1.07994 * 119.50018 * 179.97438 * 28 27 26 48 48 H 1.07995 * 120.17050 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 1.2437 5 1 1.3052 -1.4437 1.6201 6 7 2.4555 0.1992 2.2872 7 6 2.4583 -0.1896 3.6003 8 1 2.1655 -1.1945 3.8665 9 6 2.8384 0.7075 4.5889 10 7 3.1957 1.9320 4.2644 11 14 2.8415 0.1774 6.3801 12 1 4.1710 -0.3856 6.7274 13 1 2.5601 1.3517 7.2444 14 1 1.7958 -0.8554 6.5925 15 6 3.2876 -1.5133 0.6944 16 6 2.8145 -1.8804 -0.7343 17 7 2.0301 -0.7157 -1.1830 18 6 1.8072 -0.3655 -2.4653 19 8 1.1431 0.6172 -2.7189 20 6 2.3831 -1.1950 -3.5838 21 6 1.9908 -0.5934 -4.9086 22 6 0.8935 -1.0526 -5.5706 23 6 0.5157 -0.5091 -6.7966 24 6 1.2325 0.4972 -7.3680 25 6 2.3713 0.9973 -6.7145 26 6 3.1368 2.0351 -7.2733 27 6 4.2341 2.4938 -6.6118 28 6 4.6127 1.9494 -5.3858 29 6 3.8964 0.9430 -4.8148 30 6 2.7524 0.4484 -5.4645 31 1 -0.3633 0.4979 0.8990 32 1 -0.3633 -1.0275 -0.0183 33 1 -0.3634 0.5296 -0.8807 34 1 2.7188 1.1016 2.0480 35 1 3.4616 2.5588 4.9552 36 1 4.1655 -0.8679 0.6615 37 1 3.4857 -2.4089 1.2832 38 1 3.6716 -2.0356 -1.3896 39 1 2.1903 -2.7735 -0.7093 40 1 3.4698 -1.2127 -3.5008 41 1 1.9971 -2.2122 -3.5178 42 1 0.3075 -1.8508 -5.1393 43 1 -0.3591 -0.8921 -7.3012 44 1 0.9279 0.9085 -8.3190 45 1 2.8563 2.4658 -8.2232 46 1 4.8209 3.2911 -7.0437 47 1 5.4881 2.3315 -4.8819 48 1 4.2020 0.5307 -3.8646 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987394896.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:02 Heat of formation + Delta-G solvation = 3.994033 kcal Electronic energy + Delta-G solvation = -28765.427970 eV Core-core repulsion = 24977.259304 eV Total energy + Delta-G solvation = -3788.168666 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.70912 -40.87363 -38.81453 -37.36896 -35.90312 -34.76313 -33.37944 -32.30187 -31.33629 -31.17325 -30.55788 -28.30390 -26.84833 -24.87578 -24.31653 -23.87848 -23.78412 -22.12290 -21.39170 -19.96613 -19.13093 -18.42368 -18.14066 -17.86519 -17.20823 -17.15691 -16.53376 -16.21426 -15.58082 -15.44028 -15.27612 -15.10700 -14.79534 -14.58493 -14.44352 -14.31224 -14.27465 -13.88087 -13.56621 -13.55221 -13.33647 -13.12434 -12.92785 -12.81501 -12.75090 -12.65042 -12.51413 -12.20547 -12.14373 -12.11313 -11.80351 -11.72388 -11.66502 -11.52122 -11.00075 -10.90266 -10.62863 -9.63928 -9.49714 -9.03010 -8.74954 -7.94263 -5.24335 -0.38730 0.12875 1.09590 1.49037 1.50498 1.58783 1.65777 1.94551 2.17987 2.57442 3.17725 3.37486 3.52784 3.60801 3.77952 3.84667 3.87206 3.96285 4.01918 4.09306 4.13029 4.20071 4.30902 4.34722 4.38773 4.42642 4.47168 4.49268 4.53539 4.62136 4.66192 4.67283 4.75020 4.88373 4.94376 5.05026 5.06941 5.20883 5.23289 5.25398 5.32108 5.36533 5.37298 5.47512 5.53016 5.54816 5.63458 5.72442 5.94471 6.14184 6.26020 6.61236 7.19962 7.32251 8.04555 8.28204 9.29338 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.019542 B = 0.002457 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.433435 B =11394.033773 C =12050.396287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.133 3.867 3 H 0.038 0.962 4 C 0.171 3.829 5 H 0.073 0.927 6 N -0.730 5.730 7 C -0.236 4.236 8 H 0.084 0.916 9 C -0.077 4.077 10 N -0.972 5.972 11 Si 0.973 3.027 12 H -0.286 1.286 13 H -0.301 1.301 14 H -0.266 1.266 15 C -0.149 4.149 16 C 0.104 3.896 17 N -0.610 5.610 18 C 0.525 3.475 19 O -0.577 6.577 20 C -0.091 4.091 21 C -0.071 4.071 22 C -0.113 4.113 23 C -0.121 4.121 24 C -0.114 4.114 25 C -0.077 4.077 26 C -0.112 4.112 27 C -0.127 4.127 28 C -0.126 4.126 29 C -0.126 4.126 30 C -0.057 4.057 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.370 0.630 35 H 0.250 0.750 36 H 0.054 0.946 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.118 0.882 41 H 0.135 0.865 42 H 0.139 0.861 43 H 0.149 0.851 44 H 0.150 0.850 45 H 0.151 0.849 46 H 0.147 0.853 47 H 0.135 0.865 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.393 -9.824 -25.690 27.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.028 3.972 3 H 0.056 0.944 4 C 0.061 3.939 5 H 0.091 0.909 6 N -0.368 5.368 7 C -0.367 4.367 8 H 0.102 0.898 9 C -0.269 4.269 10 N -0.623 5.623 11 Si 0.803 3.197 12 H -0.213 1.213 13 H -0.228 1.228 14 H -0.191 1.191 15 C -0.190 4.190 16 C -0.018 4.018 17 N -0.344 5.344 18 C 0.315 3.685 19 O -0.457 6.457 20 C -0.130 4.130 21 C -0.071 4.071 22 C -0.131 4.131 23 C -0.139 4.139 24 C -0.132 4.132 25 C -0.077 4.077 26 C -0.129 4.129 27 C -0.144 4.144 28 C -0.144 4.144 29 C -0.144 4.144 30 C -0.057 4.057 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.202 0.798 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.120 0.880 39 H 0.115 0.885 40 H 0.136 0.864 41 H 0.153 0.847 42 H 0.157 0.843 43 H 0.167 0.833 44 H 0.168 0.832 45 H 0.169 0.831 46 H 0.164 0.836 47 H 0.153 0.847 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.795 -9.405 -25.730 27.407 hybrid contribution 0.245 0.852 1.450 1.699 sum -0.549 -8.553 -24.281 25.749 Atomic orbital electron populations 1.21915 0.94507 1.02349 1.01312 1.21610 0.94694 0.95266 0.85666 0.94354 1.21440 0.95094 0.90985 0.86383 0.90943 1.42537 1.79664 1.12136 1.02511 1.19633 1.36095 0.97036 0.83966 0.89813 1.25586 1.03008 0.96065 1.02233 1.69837 1.53393 1.05884 1.33158 0.85138 0.77928 0.76676 0.79997 1.21348 1.22800 1.19089 1.23388 0.98839 1.01238 0.95494 1.22567 0.95955 0.88022 0.95269 1.48644 1.52404 1.29107 1.04260 1.20770 0.80083 0.85099 0.82546 1.90700 1.41801 1.29511 1.83686 1.20702 1.03702 1.00414 0.88170 1.19333 0.96457 0.96168 0.95180 1.21026 0.95568 1.00824 0.95660 1.21145 1.00494 0.96763 0.95485 1.21340 0.94087 0.97058 1.00695 1.18434 0.97127 0.97654 0.94474 1.21359 0.95028 0.95745 1.00815 1.21173 0.97624 1.00538 0.95091 1.21161 1.00454 0.96384 0.96367 1.21174 0.95134 0.98357 0.99687 1.18155 0.95985 0.96647 0.94948 0.92694 0.91071 0.93242 0.79830 0.94141 0.92731 0.89149 0.88031 0.88489 0.86368 0.84679 0.84333 0.83335 0.83186 0.83104 0.83564 0.84688 0.86149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.89 9.09 71.98 0.65 -4.23 16 2 C 0.13 4.75 3.21 45.34 0.15 4.90 16 3 H 0.04 1.66 7.71 -2.38 -0.02 1.64 16 4 C 0.17 6.35 3.14 46.18 0.14 6.49 16 5 H 0.07 2.63 7.80 -2.39 -0.02 2.61 16 6 N -0.73 -35.87 5.22 -317.33 -1.66 -37.53 16 7 C -0.24 -12.57 9.96 84.03 0.84 -11.73 16 8 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 9 C -0.08 -4.33 5.50 84.86 0.47 -3.87 16 10 N -0.97 -59.51 13.06 21.65 0.28 -59.23 16 11 Si 0.97 45.27 29.55 68.60 2.03 47.30 16 12 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 13 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 14 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 15 C -0.15 -4.41 6.77 31.99 0.22 -4.19 16 16 C 0.10 2.20 6.69 86.86 0.58 2.79 16 17 N -0.61 -17.47 3.07 -788.04 -2.42 -19.89 16 18 C 0.52 15.41 7.64 87.66 0.67 16.08 16 19 O -0.58 -22.39 15.08 -3.04 -0.05 -22.43 16 20 C -0.09 -1.82 4.24 29.10 0.12 -1.70 16 21 C -0.07 -1.67 4.38 -19.80 -0.09 -1.76 16 22 C -0.11 -2.31 9.57 22.04 0.21 -2.10 16 23 C -0.12 -2.19 9.95 22.04 0.22 -1.97 16 24 C -0.11 -2.16 9.77 22.33 0.22 -1.94 16 25 C -0.08 -1.79 5.74 -21.30 -0.12 -1.91 16 26 C -0.11 -2.16 9.77 22.33 0.22 -1.94 16 27 C -0.13 -2.42 9.95 22.04 0.22 -2.20 16 28 C -0.13 -2.77 9.95 22.05 0.22 -2.55 16 29 C -0.13 -3.17 9.28 22.33 0.21 -2.96 16 30 C -0.06 -1.49 5.74 -21.30 -0.12 -1.61 16 31 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.05 1.80 6.90 -2.38 -0.02 1.78 16 34 H 0.37 20.29 7.56 -92.71 -0.70 19.58 16 35 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 36 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.10 1.56 7.48 -2.39 -0.02 1.55 16 39 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.12 1.97 6.40 -2.39 -0.02 1.95 16 41 H 0.14 1.79 8.04 -2.39 -0.02 1.77 16 42 H 0.14 2.19 8.05 -2.91 -0.02 2.17 16 43 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 44 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 45 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 46 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 47 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 48 H 0.12 2.90 6.48 -2.91 -0.02 2.88 16 Total: -1.00 -74.53 391.21 3.48 -71.05 By element: Atomic # 1 Polarization: 36.88 SS G_CDS: 0.26 Total: 37.15 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: 5.02 Total: -16.42 kcal Atomic # 7 Polarization: -112.86 SS G_CDS: -3.79 Total: -116.65 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.05 Total: -22.43 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -74.53 3.48 -71.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987394896.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.046 kcal (2) G-P(sol) polarization free energy of solvation -74.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds