Wall clock time and date at job start Tue Mar 31 2020 22:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.98900 * 2 1 4 4 C 1.54317 * 109.88357 * 121.09478 * 2 1 3 5 5 H 1.09001 * 110.87160 * 260.04872 * 4 2 1 6 6 N 1.46498 * 110.72217 * 23.25196 * 4 2 1 7 7 C 1.36943 * 119.99993 * 264.41437 * 6 4 2 8 8 H 1.08003 * 120.00021 * 359.71954 * 7 6 4 9 9 C 1.38815 * 119.99876 * 179.72432 * 7 6 4 10 10 N 1.31614 * 120.00320 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99462 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47100 * 89.99955 * 11 9 7 13 13 H 1.48500 * 109.46787 * 209.99450 * 11 9 7 14 14 H 1.48495 * 109.47435 * 329.99859 * 11 9 7 15 15 C 1.55158 * 102.94154 * 141.61581 * 4 2 1 16 16 C 1.54912 * 101.58071 * 324.49572 * 15 4 2 17 17 N 1.47015 * 109.88300 * 238.90868 * 2 1 3 18 18 C 1.34779 * 125.65457 * 61.60290 * 17 2 1 19 19 O 1.21286 * 119.99769 * 0.02562 * 18 17 2 20 20 C 1.50699 * 120.00496 * 180.02562 * 18 17 2 21 21 C 1.50698 * 109.47133 * 179.97438 * 20 18 17 22 22 C 1.36123 * 120.17405 * 264.99580 * 21 20 18 23 23 C 1.39333 * 120.99227 * 179.97438 * 22 21 20 24 24 C 1.36123 * 120.98497 * 0.02773 * 23 22 21 25 25 C 1.40506 * 119.65972 * 0.02562 * 24 23 22 26 26 C 1.40542 * 121.29195 * 179.97438 * 25 24 23 27 27 C 1.36095 * 119.64848 * 180.02562 * 26 25 24 28 28 C 1.39378 * 120.99481 * 359.97438 * 27 26 25 29 29 C 1.36086 * 120.99541 * 359.97438 * 28 27 26 30 30 C 1.40507 * 120.17337 * 84.72723 * 21 20 18 31 31 H 1.08994 * 109.47076 * 293.63664 * 1 2 3 32 32 H 1.08997 * 109.47172 * 53.63979 * 1 2 3 33 33 H 1.09005 * 109.46600 * 173.63480 * 1 2 3 34 34 H 0.97001 * 120.00558 * 84.12849 * 6 4 2 35 35 H 0.96996 * 119.99989 * 180.02562 * 10 9 7 36 36 H 1.08993 * 111.00393 * 82.57163 * 15 4 2 37 37 H 1.09003 * 110.99988 * 206.38729 * 15 4 2 38 38 H 1.08993 * 110.36615 * 155.84743 * 16 15 4 39 39 H 1.08995 * 110.36712 * 278.17558 * 16 15 4 40 40 H 1.08999 * 109.47035 * 300.00343 * 20 18 17 41 41 H 1.09004 * 109.46573 * 59.99917 * 20 18 17 42 42 H 1.08004 * 119.50318 * 359.97438 * 22 21 20 43 43 H 1.07994 * 119.50757 * 180.02562 * 23 22 21 44 44 H 1.08007 * 120.17189 * 180.02562 * 24 23 22 45 45 H 1.07992 * 120.17653 * 359.97438 * 26 25 24 46 46 H 1.08003 * 119.49588 * 180.02562 * 27 26 25 47 47 H 1.08005 * 119.49965 * 180.02562 * 28 27 26 48 48 H 1.08002 * 120.17264 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 6 2.0549 -0.7495 1.2427 5 1 2.3525 -0.0481 2.0222 6 7 1.0473 -1.6855 1.7474 7 6 0.2102 -1.3083 2.7634 8 1 0.2958 -0.3223 3.1957 9 6 -0.7483 -2.1933 3.2377 10 7 -0.8529 -3.3948 2.7107 11 14 -1.8896 -1.6789 4.6241 12 1 -3.1092 -1.0515 4.0544 13 1 -2.2727 -2.8734 5.4189 14 1 -1.1945 -0.7028 5.5012 15 6 3.2877 -1.5141 0.6923 16 6 2.8146 -1.8793 -0.7368 17 7 2.0300 -0.7139 -1.1839 18 6 1.8074 -0.3619 -2.4657 19 8 1.1436 0.6212 -2.7181 20 6 2.3833 -1.1899 -3.5855 21 6 1.9903 -0.5870 -4.9095 22 6 0.8931 -1.0461 -5.5716 23 6 0.5139 -0.5007 -6.7964 24 6 1.2300 0.5066 -7.3667 25 6 2.3694 1.0060 -6.7136 26 6 3.1341 2.0448 -7.2716 27 6 4.2320 2.5026 -6.6103 28 6 4.6113 1.9570 -5.3851 29 6 3.8945 0.9510 -4.8140 30 6 2.7512 0.4558 -5.4644 31 1 -0.3633 0.4120 0.9414 32 1 -0.3633 0.6092 -0.8276 33 1 -0.3633 -1.0214 -0.1139 34 1 0.9703 -2.5711 1.3591 35 1 -1.5229 -4.0130 3.0419 36 1 4.1654 -0.8686 0.6604 37 1 3.4857 -2.4105 1.2800 38 1 3.6717 -2.0336 -1.3923 39 1 2.1888 -2.7713 -0.7129 40 1 3.4700 -1.2079 -3.5022 41 1 1.9971 -2.2072 -3.5208 42 1 0.3077 -1.8451 -5.1410 43 1 -0.3612 -0.8830 -7.3007 44 1 0.9239 0.9200 -8.3165 45 1 2.8525 2.4769 -8.2204 46 1 4.8176 3.3012 -7.0411 47 1 5.4867 2.3390 -4.8810 48 1 4.2007 0.5377 -3.8643 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987394898.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:12 Heat of formation + Delta-G solvation = 25.346318 kcal Electronic energy + Delta-G solvation = -29113.994925 eV Core-core repulsion = 25326.752163 eV Total energy + Delta-G solvation = -3787.242762 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.73127 -39.65789 -37.50760 -36.50880 -34.00946 -33.78805 -31.60231 -30.76017 -30.37293 -30.19882 -28.92858 -27.20833 -25.22858 -23.51575 -23.34583 -23.05114 -22.52296 -21.08047 -19.68073 -18.40484 -17.61743 -17.50130 -17.08323 -16.61673 -16.30805 -15.78966 -15.11101 -14.59016 -14.48563 -14.25086 -13.95227 -13.73906 -13.54997 -13.53464 -13.36829 -13.30110 -12.88687 -12.74725 -12.52593 -12.42024 -11.97625 -11.93428 -11.45563 -11.37948 -11.32046 -11.00306 -10.90299 -10.87534 -10.82018 -10.60509 -10.49415 -10.18236 -10.06710 -9.96324 -9.68753 -9.38770 -8.97302 -8.65488 -8.20307 -7.90763 -7.05528 -5.83846 -3.12892 0.45188 0.97368 1.96813 2.90380 2.95922 3.38536 3.40773 3.46264 3.47086 4.06655 4.40632 4.53449 4.66899 4.74318 4.80602 4.82818 4.91576 4.98680 5.05689 5.12897 5.28153 5.29373 5.32767 5.39740 5.43869 5.46599 5.56229 5.66268 5.71646 5.77363 5.86864 5.89525 6.03149 6.09874 6.14281 6.17212 6.24138 6.29507 6.35381 6.45386 6.46894 6.58002 6.58123 6.66306 6.75259 6.85351 6.94656 7.06995 7.34877 7.64499 7.94905 8.33679 8.53492 9.45960 9.99802 10.35004 11.38293 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.020189 B = 0.002618 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.581809 B =10692.736382 C =11206.493914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.109 3.891 3 H 0.058 0.942 4 C 0.171 3.829 5 H 0.074 0.926 6 N -0.709 5.709 7 C -0.239 4.239 8 H 0.071 0.929 9 C -0.009 4.009 10 N -0.930 5.930 11 Si 0.905 3.095 12 H -0.290 1.290 13 H -0.292 1.292 14 H -0.282 1.282 15 C -0.145 4.145 16 C 0.101 3.899 17 N -0.606 5.606 18 C 0.526 3.474 19 O -0.535 6.535 20 C -0.103 4.103 21 C -0.045 4.045 22 C -0.106 4.106 23 C -0.110 4.110 24 C -0.113 4.113 25 C -0.051 4.051 26 C -0.108 4.108 27 C -0.119 4.119 28 C -0.120 4.120 29 C -0.099 4.099 30 C -0.034 4.034 31 H 0.067 0.933 32 H 0.038 0.962 33 H 0.063 0.937 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.124 0.876 46 H 0.120 0.880 47 H 0.121 0.879 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.864 5.249 -19.099 23.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.004 3.996 3 H 0.076 0.924 4 C 0.058 3.942 5 H 0.092 0.908 6 N -0.348 5.348 7 C -0.370 4.370 8 H 0.089 0.911 9 C -0.205 4.205 10 N -0.578 5.578 11 Si 0.736 3.264 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.185 4.185 16 C -0.022 4.022 17 N -0.340 5.340 18 C 0.313 3.687 19 O -0.411 6.411 20 C -0.143 4.143 21 C -0.045 4.045 22 C -0.124 4.124 23 C -0.128 4.128 24 C -0.131 4.131 25 C -0.051 4.051 26 C -0.126 4.126 27 C -0.137 4.137 28 C -0.138 4.138 29 C -0.117 4.117 30 C -0.034 4.034 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.219 0.781 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.142 0.858 46 H 0.138 0.862 47 H 0.139 0.861 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.384 5.852 -19.122 23.010 hybrid contribution -0.807 -0.124 0.661 1.050 sum 10.577 5.728 -18.460 22.034 Atomic orbital electron populations 1.21752 0.93795 1.02484 1.00923 1.22708 0.96145 0.95306 0.85462 0.92417 1.21247 0.88487 0.92186 0.92290 0.90824 1.42324 1.37552 1.14035 1.40868 1.19188 1.09952 0.98488 1.09367 0.91077 1.24715 0.99697 0.96153 0.99981 1.69645 1.37221 1.06388 1.44564 0.86232 0.81122 0.77217 0.81865 1.21691 1.21818 1.20724 1.23143 0.98570 1.01792 0.94948 1.22304 0.94531 0.89275 0.96087 1.48647 1.51995 1.28335 1.05043 1.19958 0.81031 0.85447 0.82216 1.90708 1.39672 1.27640 1.83123 1.20711 1.02658 1.00251 0.90694 1.19144 0.95530 0.95395 0.94442 1.20725 0.95954 1.00546 0.95198 1.20798 0.99628 0.96758 0.95586 1.20970 0.94877 0.97340 0.99882 1.18043 0.96020 0.96767 0.94294 1.20984 0.95388 0.96361 0.99884 1.20815 0.97321 1.00076 0.95497 1.20817 1.00150 0.96973 0.95878 1.21029 0.94333 0.97101 0.99240 1.17849 0.95494 0.95918 0.94099 0.91372 0.94329 0.91823 0.78101 0.93464 0.91102 0.89515 0.91606 0.91135 0.88213 0.87892 0.85931 0.85935 0.85764 0.85773 0.86179 0.86124 0.85949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 8.02 37.16 0.30 -2.47 16 2 C 0.11 2.00 3.44 -66.96 -0.23 1.77 16 3 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 4 C 0.17 3.11 3.52 -66.10 -0.23 2.87 16 5 H 0.07 1.34 8.06 -51.93 -0.42 0.93 16 6 N -0.71 -16.13 3.91 -51.65 -0.20 -16.33 16 7 C -0.24 -6.17 8.40 -15.06 -0.13 -6.29 16 8 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 9 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 10 N -0.93 -26.84 13.06 55.49 0.72 -26.12 16 11 Si 0.90 21.79 29.55 -169.99 -5.02 16.77 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 15 C -0.15 -2.06 6.69 -24.58 -0.16 -2.23 16 16 C 0.10 1.36 6.62 -2.53 -0.02 1.34 16 17 N -0.61 -9.76 3.07 -163.02 -0.50 -10.26 16 18 C 0.53 8.62 7.64 -10.99 -0.08 8.54 16 19 O -0.53 -10.84 15.18 5.55 0.08 -10.76 16 20 C -0.10 -1.28 4.24 -29.04 -0.12 -1.40 16 21 C -0.04 -0.60 4.38 -104.53 -0.46 -1.05 16 22 C -0.11 -1.33 9.57 -39.93 -0.38 -1.71 16 23 C -0.11 -1.22 9.95 -39.93 -0.40 -1.62 16 24 C -0.11 -1.24 9.77 -39.49 -0.39 -1.63 16 25 C -0.05 -0.64 5.74 -106.83 -0.61 -1.25 16 26 C -0.11 -1.13 9.77 -39.48 -0.39 -1.51 16 27 C -0.12 -1.17 9.95 -39.93 -0.40 -1.57 16 28 C -0.12 -1.27 9.95 -39.93 -0.40 -1.67 16 29 C -0.10 -1.21 9.28 -39.48 -0.37 -1.58 16 30 C -0.03 -0.45 5.74 -106.83 -0.61 -1.07 16 31 H 0.07 1.50 7.11 -51.93 -0.37 1.13 16 32 H 0.04 0.82 7.08 -51.93 -0.37 0.45 16 33 H 0.06 1.48 7.64 -51.93 -0.40 1.09 16 34 H 0.38 9.40 7.84 -40.82 -0.32 9.08 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.07 0.67 7.48 -51.93 -0.39 0.29 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.10 1.00 6.41 -51.93 -0.33 0.67 16 41 H 0.10 1.10 8.04 -51.93 -0.42 0.69 16 42 H 0.12 1.38 8.05 -52.48 -0.42 0.96 16 43 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 44 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 45 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 46 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 47 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 48 H 0.12 1.38 6.49 -52.49 -0.34 1.04 16 LS Contribution 387.43 15.07 5.84 5.84 Total: -1.00 -32.06 387.43 -11.37 -43.44 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -7.12 Total: 10.29 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -5.17 Total: -12.87 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: 0.02 Total: -52.71 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.08 Total: -10.76 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.06 -11.37 -43.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987394898.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.784 kcal (2) G-P(sol) polarization free energy of solvation -32.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds