Wall clock time and date at job start Tue Mar 31 2020 22:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.98900 * 2 1 4 4 C 1.54317 * 109.88357 * 121.09478 * 2 1 3 5 5 H 1.09001 * 110.87160 * 260.04872 * 4 2 1 6 6 N 1.46498 * 110.72217 * 23.25196 * 4 2 1 7 7 C 1.36943 * 119.99993 * 264.41437 * 6 4 2 8 8 H 1.08003 * 120.00021 * 359.71954 * 7 6 4 9 9 C 1.38815 * 119.99876 * 179.72432 * 7 6 4 10 10 N 1.31614 * 120.00320 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99462 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47100 * 89.99955 * 11 9 7 13 13 H 1.48500 * 109.46787 * 209.99450 * 11 9 7 14 14 H 1.48495 * 109.47435 * 329.99859 * 11 9 7 15 15 C 1.55158 * 102.94154 * 141.61581 * 4 2 1 16 16 C 1.54912 * 101.58071 * 324.49572 * 15 4 2 17 17 N 1.47015 * 109.88300 * 238.90868 * 2 1 3 18 18 C 1.34779 * 125.65457 * 61.60290 * 17 2 1 19 19 O 1.21286 * 119.99769 * 0.02562 * 18 17 2 20 20 C 1.50699 * 120.00496 * 180.02562 * 18 17 2 21 21 C 1.50698 * 109.47133 * 179.97438 * 20 18 17 22 22 C 1.36123 * 120.17405 * 264.99580 * 21 20 18 23 23 C 1.39333 * 120.99227 * 179.97438 * 22 21 20 24 24 C 1.36123 * 120.98497 * 0.02773 * 23 22 21 25 25 C 1.40506 * 119.65972 * 0.02562 * 24 23 22 26 26 C 1.40542 * 121.29195 * 179.97438 * 25 24 23 27 27 C 1.36095 * 119.64848 * 180.02562 * 26 25 24 28 28 C 1.39378 * 120.99481 * 359.97438 * 27 26 25 29 29 C 1.36086 * 120.99541 * 359.97438 * 28 27 26 30 30 C 1.40507 * 120.17337 * 84.72723 * 21 20 18 31 31 H 1.08994 * 109.47076 * 293.63664 * 1 2 3 32 32 H 1.08997 * 109.47172 * 53.63979 * 1 2 3 33 33 H 1.09005 * 109.46600 * 173.63480 * 1 2 3 34 34 H 0.97001 * 120.00558 * 84.12849 * 6 4 2 35 35 H 0.96996 * 119.99989 * 180.02562 * 10 9 7 36 36 H 1.08993 * 111.00393 * 82.57163 * 15 4 2 37 37 H 1.09003 * 110.99988 * 206.38729 * 15 4 2 38 38 H 1.08993 * 110.36615 * 155.84743 * 16 15 4 39 39 H 1.08995 * 110.36712 * 278.17558 * 16 15 4 40 40 H 1.08999 * 109.47035 * 300.00343 * 20 18 17 41 41 H 1.09004 * 109.46573 * 59.99917 * 20 18 17 42 42 H 1.08004 * 119.50318 * 359.97438 * 22 21 20 43 43 H 1.07994 * 119.50757 * 180.02562 * 23 22 21 44 44 H 1.08007 * 120.17189 * 180.02562 * 24 23 22 45 45 H 1.07992 * 120.17653 * 359.97438 * 26 25 24 46 46 H 1.08003 * 119.49588 * 180.02562 * 27 26 25 47 47 H 1.08005 * 119.49965 * 180.02562 * 28 27 26 48 48 H 1.08002 * 120.17264 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 6 2.0549 -0.7495 1.2427 5 1 2.3525 -0.0481 2.0222 6 7 1.0473 -1.6855 1.7474 7 6 0.2102 -1.3083 2.7634 8 1 0.2958 -0.3223 3.1957 9 6 -0.7483 -2.1933 3.2377 10 7 -0.8529 -3.3948 2.7107 11 14 -1.8896 -1.6789 4.6241 12 1 -3.1092 -1.0515 4.0544 13 1 -2.2727 -2.8734 5.4189 14 1 -1.1945 -0.7028 5.5012 15 6 3.2877 -1.5141 0.6923 16 6 2.8146 -1.8793 -0.7368 17 7 2.0300 -0.7139 -1.1839 18 6 1.8074 -0.3619 -2.4657 19 8 1.1436 0.6212 -2.7181 20 6 2.3833 -1.1899 -3.5855 21 6 1.9903 -0.5870 -4.9095 22 6 0.8931 -1.0461 -5.5716 23 6 0.5139 -0.5007 -6.7964 24 6 1.2300 0.5066 -7.3667 25 6 2.3694 1.0060 -6.7136 26 6 3.1341 2.0448 -7.2716 27 6 4.2320 2.5026 -6.6103 28 6 4.6113 1.9570 -5.3851 29 6 3.8945 0.9510 -4.8140 30 6 2.7512 0.4558 -5.4644 31 1 -0.3633 0.4120 0.9414 32 1 -0.3633 0.6092 -0.8276 33 1 -0.3633 -1.0214 -0.1139 34 1 0.9703 -2.5711 1.3591 35 1 -1.5229 -4.0130 3.0419 36 1 4.1654 -0.8686 0.6604 37 1 3.4857 -2.4105 1.2800 38 1 3.6717 -2.0336 -1.3923 39 1 2.1888 -2.7713 -0.7129 40 1 3.4700 -1.2079 -3.5022 41 1 1.9971 -2.2072 -3.5208 42 1 0.3077 -1.8451 -5.1410 43 1 -0.3612 -0.8830 -7.3007 44 1 0.9239 0.9200 -8.3165 45 1 2.8525 2.4769 -8.2204 46 1 4.8176 3.3012 -7.0411 47 1 5.4867 2.3390 -4.8810 48 1 4.2007 0.5377 -3.8643 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987394898.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:11 Heat of formation + Delta-G solvation = 8.672520 kcal Electronic energy + Delta-G solvation = -29114.717955 eV Core-core repulsion = 25326.752163 eV Total energy + Delta-G solvation = -3787.965792 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.69344 -40.86540 -38.85788 -37.36511 -35.73610 -34.74479 -33.28536 -32.16796 -31.30261 -31.16121 -30.38851 -28.26271 -26.81323 -25.27550 -24.31926 -23.87651 -23.72552 -22.10464 -21.00590 -19.73931 -19.33480 -18.42034 -18.07393 -17.83484 -17.20163 -17.13990 -16.42972 -16.11195 -15.56968 -15.36398 -15.23094 -15.13358 -15.03322 -14.55936 -14.41861 -14.32747 -14.22684 -13.91670 -13.77871 -13.53284 -13.18301 -13.04058 -12.85833 -12.77731 -12.73388 -12.40230 -12.28144 -12.19932 -12.19270 -11.85016 -11.80652 -11.72639 -11.61071 -11.48846 -10.99576 -10.91266 -10.60518 -9.56316 -9.49549 -8.99072 -8.74355 -7.91813 -5.18150 -0.38158 0.12956 1.10837 1.47369 1.49146 1.55797 1.68918 2.01755 2.23325 2.57219 3.18937 3.39826 3.53492 3.70751 3.75541 3.84240 3.90818 3.94798 4.03308 4.13609 4.16117 4.27759 4.31546 4.36694 4.42365 4.46124 4.50253 4.55685 4.61360 4.64812 4.66789 4.77396 4.85266 4.89486 5.01666 5.06480 5.13914 5.23769 5.26421 5.32465 5.33125 5.36963 5.49809 5.52612 5.54677 5.58814 5.64036 5.72866 5.94735 6.14582 6.29998 6.68095 7.25051 7.38141 8.11343 8.35099 9.31134 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.020189 B = 0.002618 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.581809 B =10692.736382 C =11206.493914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.115 3.885 3 H 0.061 0.939 4 C 0.162 3.838 5 H 0.076 0.924 6 N -0.716 5.716 7 C -0.225 4.225 8 H 0.074 0.926 9 C -0.070 4.070 10 N -0.965 5.965 11 Si 0.959 3.041 12 H -0.296 1.296 13 H -0.298 1.298 14 H -0.269 1.269 15 C -0.131 4.131 16 C 0.101 3.899 17 N -0.606 5.606 18 C 0.523 3.477 19 O -0.580 6.580 20 C -0.092 4.092 21 C -0.067 4.067 22 C -0.122 4.122 23 C -0.123 4.123 24 C -0.113 4.113 25 C -0.077 4.077 26 C -0.113 4.113 27 C -0.124 4.124 28 C -0.121 4.121 29 C -0.123 4.123 30 C -0.057 4.057 31 H 0.051 0.949 32 H 0.027 0.973 33 H 0.034 0.966 34 H 0.375 0.625 35 H 0.248 0.752 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.110 0.890 39 H 0.059 0.941 40 H 0.127 0.873 41 H 0.119 0.881 42 H 0.127 0.873 43 H 0.144 0.856 44 H 0.151 0.849 45 H 0.150 0.850 46 H 0.149 0.851 47 H 0.143 0.857 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.141 6.172 -20.425 25.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.009 3.991 3 H 0.079 0.921 4 C 0.052 3.948 5 H 0.094 0.906 6 N -0.354 5.354 7 C -0.357 4.357 8 H 0.092 0.908 9 C -0.263 4.263 10 N -0.616 5.616 11 Si 0.790 3.210 12 H -0.224 1.224 13 H -0.225 1.225 14 H -0.194 1.194 15 C -0.169 4.169 16 C -0.021 4.021 17 N -0.340 5.340 18 C 0.313 3.687 19 O -0.460 6.460 20 C -0.131 4.131 21 C -0.068 4.068 22 C -0.140 4.140 23 C -0.141 4.141 24 C -0.131 4.131 25 C -0.077 4.077 26 C -0.131 4.131 27 C -0.142 4.142 28 C -0.139 4.139 29 C -0.141 4.141 30 C -0.057 4.057 31 H 0.070 0.930 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.208 0.792 35 H 0.057 0.943 36 H 0.120 0.880 37 H 0.106 0.894 38 H 0.128 0.872 39 H 0.078 0.922 40 H 0.144 0.856 41 H 0.137 0.863 42 H 0.144 0.856 43 H 0.162 0.838 44 H 0.169 0.831 45 H 0.168 0.832 46 H 0.167 0.833 47 H 0.161 0.839 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 13.714 6.796 -20.450 25.543 hybrid contribution -1.467 -0.284 0.979 1.786 sum 12.247 6.511 -19.471 23.906 Atomic orbital electron populations 1.21548 0.96249 1.00056 0.99481 1.22430 0.93956 0.95919 0.86843 0.92088 1.21463 0.89122 0.92083 0.92172 0.90587 1.42419 1.38251 1.14345 1.40366 1.19496 1.09271 0.98053 1.08859 0.90763 1.25362 1.01738 0.96553 1.02608 1.69776 1.38176 1.07383 1.46287 0.85346 0.79295 0.76669 0.79724 1.22381 1.22485 1.19377 1.23076 0.97401 1.01750 0.94713 1.22477 0.95418 0.87616 0.96617 1.48690 1.52016 1.28762 1.04504 1.20682 0.80145 0.85100 0.82784 1.90682 1.41697 1.29795 1.83791 1.20694 1.04015 0.99863 0.88575 1.19319 0.96246 0.96206 0.95001 1.20987 0.96000 1.00966 0.96015 1.21095 1.00553 0.97059 0.95420 1.21336 0.94222 0.96863 1.00695 1.18438 0.97003 0.97726 0.94504 1.21341 0.95204 0.95683 1.00858 1.21206 0.97335 1.00458 0.95168 1.21182 1.00410 0.96143 0.96161 1.21189 0.94740 0.98301 0.99826 1.18144 0.96203 0.96381 0.94938 0.92997 0.95351 0.94659 0.79208 0.94284 0.87975 0.89382 0.87157 0.92242 0.85550 0.86309 0.85553 0.83793 0.83098 0.83236 0.83312 0.83949 0.85582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.99 8.02 71.98 0.58 -4.41 16 2 C 0.11 4.16 3.44 45.34 0.16 4.32 16 3 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 4 C 0.16 5.74 3.52 46.18 0.16 5.90 16 5 H 0.08 2.66 8.06 -2.39 -0.02 2.64 16 6 N -0.72 -32.69 3.91 -317.33 -1.24 -33.93 16 7 C -0.22 -11.67 8.40 84.03 0.71 -10.97 16 8 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 9 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 10 N -0.97 -57.01 13.06 21.65 0.28 -56.73 16 11 Si 0.96 45.47 29.55 68.60 2.03 47.50 16 12 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 13 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 14 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 15 C -0.13 -3.34 6.69 31.99 0.21 -3.13 16 16 C 0.10 2.45 6.62 86.86 0.58 3.03 16 17 N -0.61 -18.81 3.07 -788.07 -2.42 -21.22 16 18 C 0.52 16.82 7.64 87.66 0.67 17.49 16 19 O -0.58 -23.84 15.18 -3.05 -0.05 -23.89 16 20 C -0.09 -2.15 4.24 29.10 0.12 -2.03 16 21 C -0.07 -1.77 4.38 -19.80 -0.09 -1.86 16 22 C -0.12 -3.04 9.57 22.04 0.21 -2.83 16 23 C -0.12 -2.67 9.95 22.04 0.22 -2.45 16 24 C -0.11 -2.36 9.77 22.33 0.22 -2.14 16 25 C -0.08 -1.82 5.74 -21.30 -0.12 -1.95 16 26 C -0.11 -2.12 9.77 22.33 0.22 -1.90 16 27 C -0.12 -2.13 9.95 22.05 0.22 -1.91 16 28 C -0.12 -2.32 9.95 22.04 0.22 -2.10 16 29 C -0.12 -2.86 9.28 22.33 0.21 -2.65 16 30 C -0.06 -1.49 5.74 -21.30 -0.12 -1.61 16 31 H 0.05 2.35 7.11 -2.39 -0.02 2.34 16 32 H 0.03 1.24 7.08 -2.39 -0.02 1.23 16 33 H 0.03 1.69 7.64 -2.38 -0.02 1.67 16 34 H 0.38 18.57 7.84 -92.71 -0.73 17.84 16 35 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 36 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.11 1.77 7.48 -2.39 -0.02 1.76 16 39 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.13 2.21 6.41 -2.39 -0.02 2.19 16 41 H 0.12 2.36 8.04 -2.39 -0.02 2.34 16 42 H 0.13 2.87 8.05 -2.91 -0.02 2.85 16 43 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 44 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 45 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 46 H 0.15 1.62 8.06 -2.91 -0.02 1.59 16 47 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 48 H 0.13 2.66 6.49 -2.91 -0.02 2.64 16 Total: -1.00 -72.15 387.43 3.68 -68.47 By element: Atomic # 1 Polarization: 34.17 SS G_CDS: 0.24 Total: 34.41 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: 4.83 Total: -14.61 kcal Atomic # 7 Polarization: -108.51 SS G_CDS: -3.37 Total: -111.88 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.05 Total: -23.89 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -72.15 3.68 -68.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987394898.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.143 kcal (2) G-P(sol) polarization free energy of solvation -72.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds