Wall clock time and date at job start Tue Mar 31 2020 22:10:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 H 1.08999 * 110.00172 * 2 1
4 4 C 1.54331 * 109.87911 * 121.09471 * 2 1 3
5 5 H 1.08996 * 110.87069 * 23.18099 * 4 2 1
6 6 N 1.46499 * 110.71877 * 259.97329 * 4 2 1
7 7 C 1.36932 * 119.99549 * 160.02628 * 6 4 2
8 8 H 1.08003 * 120.00354 * 0.02562 * 7 6 4
9 9 C 1.38817 * 120.00011 * 179.97438 * 7 6 4
10 10 N 1.31619 * 120.00154 * 180.02562 * 9 7 6
11 11 Si 1.86798 * 119.99635 * 0.02562 * 9 7 6
12 12 H 1.48506 * 109.47297 * 269.99668 * 11 9 7
13 13 H 1.48503 * 109.47261 * 149.99848 * 11 9 7
14 14 H 1.48500 * 109.47454 * 29.99841 * 11 9 7
15 15 C 1.55164 * 102.93849 * 141.61325 * 4 2 1
16 16 C 1.54912 * 101.58053 * 324.49392 * 15 4 2
17 17 N 1.47018 * 109.88803 * 238.90202 * 2 1 3
18 18 C 1.34778 * 125.64661 * 61.60510 * 17 2 1
19 19 O 1.21285 * 119.99652 * 0.02562 * 18 17 2
20 20 C 1.50699 * 120.00259 * 180.02562 * 18 17 2
21 21 C 1.50702 * 109.47060 * 180.02562 * 20 18 17
22 22 C 1.39370 * 119.50592 * 90.00525 * 21 20 18
23 23 C 1.36091 * 120.99113 * 179.97438 * 22 21 20
24 24 C 1.40541 * 119.65571 * 0.02562 * 23 22 21
25 25 C 1.40531 * 121.28763 * 180.02562 * 24 23 22
26 26 C 1.36091 * 119.65601 * 180.02562 * 25 24 23
27 27 C 1.39381 * 120.98786 * 359.95030 * 26 25 24
28 28 C 1.36095 * 120.98599 * 0.02562 * 27 26 25
29 29 C 1.40538 * 119.65410 * 0.02562 * 28 27 26
30 30 C 1.36095 * 119.50490 * 269.72389 * 21 20 18
31 31 H 1.09002 * 109.47603 * 298.90438 * 1 2 3
32 32 H 1.09005 * 109.47056 * 58.90695 * 1 2 3
33 33 H 1.09008 * 109.47277 * 178.90335 * 1 2 3
34 34 H 0.96993 * 120.00302 * 340.02593 * 6 4 2
35 35 H 0.96998 * 119.99442 * 179.97438 * 10 9 7
36 36 H 1.08997 * 111.00780 * 82.57414 * 15 4 2
37 37 H 1.09007 * 111.00127 * 206.38688 * 15 4 2
38 38 H 1.09006 * 110.36032 * 155.84768 * 16 15 4
39 39 H 1.08992 * 110.36948 * 278.17565 * 16 15 4
40 40 H 1.08993 * 109.47149 * 300.00235 * 20 18 17
41 41 H 1.09002 * 109.46905 * 60.00034 * 20 18 17
42 42 H 1.08005 * 119.50482 * 359.96989 * 22 21 20
43 43 H 1.08002 * 120.17143 * 179.97438 * 23 22 21
44 44 H 1.07998 * 120.17428 * 359.95157 * 25 24 23
45 45 H 1.08001 * 119.50742 * 179.97438 * 26 25 24
46 46 H 1.07994 * 119.50472 * 180.02562 * 27 26 25
47 47 H 1.07999 * 120.16891 * 179.97438 * 28 27 26
48 48 H 1.08001 * 120.17643 * 0.03136 * 30 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.9028 1.0242 0.0000
4 6 2.0547 -0.7496 1.2428
5 1 1.3063 -1.4459 1.6211
6 7 2.4553 0.1961 2.2876
7 6 2.5573 -0.2226 3.5873
8 1 2.3428 -1.2500 3.8422
9 6 2.9374 0.6732 4.5773
10 7 3.0359 0.2707 5.8266
11 14 3.3090 2.4500 4.1364
12 1 4.7504 2.5870 3.8061
13 1 2.9801 3.3255 5.2899
14 1 2.4921 2.8500 2.9626
15 6 3.2876 -1.5143 0.6925
16 6 2.8144 -1.8795 -0.7367
17 7 2.0301 -0.7141 -1.1838
18 6 1.8075 -0.3621 -2.4656
19 8 1.1436 0.6211 -2.7179
20 6 2.3834 -1.1900 -3.5853
21 6 1.9915 -0.5864 -4.9094
22 6 2.8169 0.3691 -5.4994
23 6 2.4925 0.9334 -6.6946
24 6 1.3078 0.5496 -7.3461
25 6 0.9398 1.1096 -8.5813
26 6 -0.2151 0.7140 -9.1827
27 6 -1.0409 -0.2411 -8.5924
28 6 -0.7165 -0.8054 -7.3972
29 6 0.4679 -0.4212 -6.7455
30 6 0.8397 -0.9867 -5.5138
31 1 -0.3634 0.4967 0.8996
32 1 -0.3633 0.5307 -0.8801
33 1 -0.3634 -1.0275 -0.0197
34 1 2.6483 1.1186 2.0587
35 1 3.3018 0.8966 6.5182
36 1 4.1654 -0.8689 0.6605
37 1 3.4855 -2.4108 1.2801
38 1 3.6717 -2.0338 -1.3921
39 1 2.1886 -2.7714 -0.7128
40 1 3.4700 -1.2080 -3.5021
41 1 1.9972 -2.2073 -3.5207
42 1 3.7276 0.6662 -5.0007
43 1 3.1416 1.6729 -7.1397
44 1 1.5696 1.8511 -9.0503
45 1 -0.4958 1.1463 -10.1318
46 1 -1.9518 -0.5378 -9.0909
47 1 -1.3663 -1.5440 -6.9515
48 1 0.2118 -1.7311 -5.0467
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000987490182.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:10:25
Heat of formation + Delta-G solvation = 23.276244 kcal
Electronic energy + Delta-G solvation = -28217.221439 eV
Core-core repulsion = 24429.888912 eV
Total energy + Delta-G solvation = -3787.332527 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 338.174 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-40.73302 -39.95318 -37.82284 -36.64539 -34.28700 -33.21193 -32.23581 -31.50676
-30.96966 -29.86497 -29.52307 -27.40960 -25.38891 -23.62922 -23.14752 -22.71094
-22.15790 -21.88237 -20.25898 -18.93644 -17.62788 -17.55058 -17.17873 -16.91205
-16.28884 -16.12154 -15.07125 -14.85600 -14.82194 -14.37677 -14.13092 -14.03101
-13.69216 -13.55647 -13.52222 -13.43164 -12.93306 -12.76940 -12.70874 -12.50350
-12.21759 -12.02330 -11.90977 -11.77164 -11.44150 -11.33458 -11.22072 -11.17581
-11.02805 -10.92371 -10.66744 -10.38134 -10.16822 -10.08386 -9.70760 -9.62280
-8.99641 -8.71034 -8.50033 -8.07126 -7.36758 -5.84343 -3.21587 0.34204
0.80147 1.86782 2.69821 2.71603 3.14921 3.34173 3.38087 3.42694
3.92624 4.32644 4.44387 4.53171 4.61680 4.62541 4.68451 4.79836
4.90134 4.97004 4.98509 5.09753 5.14051 5.18243 5.19447 5.31886
5.32467 5.38383 5.48615 5.54871 5.56623 5.64508 5.75221 5.79365
5.83157 5.87569 5.97772 6.01749 6.03598 6.17947 6.23069 6.32240
6.36502 6.41164 6.49058 6.50299 6.59335 6.63169 6.78229 6.80633
7.66601 7.89694 8.27364 8.34143 9.10858 9.83548 10.01853 11.33315
Molecular weight = 338.17amu
Principal moments of inertia in cm(-1)
A = 0.024221 B = 0.002151 C = 0.002119
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1155.765215 B =13013.110360 C =13208.568528
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C 0.126 3.874
3 H 0.073 0.927
4 C 0.181 3.819
5 H 0.073 0.927
6 N -0.739 5.739
7 C -0.247 4.247
8 H 0.092 0.908
9 C 0.008 3.992
10 N -0.930 5.930
11 Si 0.882 3.118
12 H -0.284 1.284
13 H -0.290 1.290
14 H -0.276 1.276
15 C -0.155 4.155
16 C 0.097 3.903
17 N -0.611 5.611
18 C 0.527 3.473
19 O -0.534 6.534
20 C -0.101 4.101
21 C -0.056 4.056
22 C -0.097 4.097
23 C -0.108 4.108
24 C -0.052 4.052
25 C -0.106 4.106
26 C -0.121 4.121
27 C -0.121 4.121
28 C -0.104 4.104
29 C -0.048 4.048
30 C -0.093 4.093
31 H 0.069 0.931
32 H 0.062 0.938
33 H 0.053 0.947
34 H 0.363 0.637
35 H 0.261 0.739
36 H 0.074 0.926
37 H 0.081 0.919
38 H 0.070 0.930
39 H 0.067 0.933
40 H 0.102 0.898
41 H 0.102 0.898
42 H 0.122 0.878
43 H 0.127 0.873
44 H 0.125 0.875
45 H 0.121 0.879
46 H 0.121 0.879
47 H 0.126 0.874
48 H 0.125 0.875
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.847 -4.851 -29.364 29.897
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C 0.022 3.978
3 H 0.091 0.909
4 C 0.070 3.930
5 H 0.091 0.909
6 N -0.381 5.381
7 C -0.377 4.377
8 H 0.110 0.890
9 C -0.188 4.188
10 N -0.577 5.577
11 Si 0.712 3.288
12 H -0.210 1.210
13 H -0.216 1.216
14 H -0.202 1.202
15 C -0.196 4.196
16 C -0.026 4.026
17 N -0.346 5.346
18 C 0.315 3.685
19 O -0.411 6.411
20 C -0.141 4.141
21 C -0.056 4.056
22 C -0.115 4.115
23 C -0.126 4.126
24 C -0.052 4.052
25 C -0.124 4.124
26 C -0.139 4.139
27 C -0.139 4.139
28 C -0.122 4.122
29 C -0.048 4.048
30 C -0.111 4.111
31 H 0.088 0.912
32 H 0.081 0.919
33 H 0.072 0.928
34 H 0.196 0.804
35 H 0.071 0.929
36 H 0.093 0.907
37 H 0.099 0.901
38 H 0.089 0.911
39 H 0.086 0.914
40 H 0.120 0.880
41 H 0.120 0.880
42 H 0.140 0.860
43 H 0.144 0.856
44 H 0.143 0.857
45 H 0.139 0.861
46 H 0.139 0.861
47 H 0.144 0.856
48 H 0.143 0.857
Dipole moment (debyes) X Y Z Total
from point charges -3.231 -4.417 -29.317 29.824
hybrid contribution 0.397 1.274 -0.059 1.336
sum -2.834 -3.143 -29.376 29.679
Atomic orbital electron populations
1.22051 0.94704 1.01856 1.02714 1.21882 0.94634 0.96620 0.84678
0.90911 1.21224 0.93890 0.91346 0.86556 0.90899 1.42703 1.82644
1.08180 1.04613 1.19013 1.39630 0.97257 0.81797 0.88997 1.24665
1.01324 0.97626 0.95173 1.69694 1.53674 1.34662 0.99660 0.86591
0.78344 0.86413 0.77437 1.21018 1.21617 1.20223 1.23523 1.00943
1.02007 0.93088 1.22420 0.94676 0.88362 0.97168 1.48600 1.52366
1.28727 1.04900 1.20079 0.80815 0.85462 0.82115 1.90718 1.39746
1.27475 1.83140 1.20715 1.02890 0.99928 0.90532 1.19014 0.95221
0.96844 0.94563 1.20711 0.99609 0.95887 0.95275 1.20955 0.96060
0.99943 0.95646 1.18096 0.95137 0.96835 0.95140 1.21023 0.97256
0.99666 0.94473 1.20831 0.94973 0.97927 1.00146 1.20830 0.99806
0.97332 0.95948 1.21042 0.95863 0.99897 0.95382 1.18040 0.95056
0.96735 0.94996 1.20830 0.95975 1.00041 0.94239 0.91212 0.91928
0.92833 0.80384 0.92940 0.90702 0.90058 0.91147 0.91441 0.87959
0.87976 0.86018 0.85554 0.85710 0.86143 0.86103 0.85638 0.85703
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.47 9.10 37.15 0.34 -2.13 16
2 C 0.13 2.08 3.21 -66.95 -0.21 1.87 16
3 H 0.07 1.35 7.69 -51.93 -0.40 0.95 16
4 C 0.18 3.25 3.11 -66.09 -0.21 3.04 16
5 H 0.07 1.34 7.84 -51.93 -0.41 0.93 16
6 N -0.74 -16.67 5.05 -51.64 -0.26 -16.93 16
7 C -0.25 -6.65 10.46 -15.06 -0.16 -6.81 16
8 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16
9 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16
10 N -0.93 -28.44 13.97 55.49 0.78 -27.66 16
11 Si 0.88 21.75 27.73 -169.99 -4.71 17.03 16
12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16
13 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16
14 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16
15 C -0.15 -2.31 6.77 -24.58 -0.17 -2.48 16
16 C 0.10 1.12 6.69 -2.53 -0.02 1.10 16
17 N -0.61 -8.59 3.06 -163.02 -0.50 -9.09 16
18 C 0.53 7.46 7.64 -10.99 -0.08 7.38 16
19 O -0.53 -9.61 15.08 5.55 0.08 -9.52 16
20 C -0.10 -1.01 4.81 -29.03 -0.14 -1.15 16
21 C -0.06 -0.63 4.34 -104.97 -0.46 -1.08 16
22 C -0.10 -1.05 9.58 -39.93 -0.38 -1.43 16
23 C -0.11 -1.12 9.77 -39.49 -0.39 -1.50 16
24 C -0.05 -0.57 5.74 -106.84 -0.61 -1.18 16
25 C -0.11 -0.96 9.77 -39.49 -0.39 -1.35 16
26 C -0.12 -0.99 9.95 -39.93 -0.40 -1.39 16
27 C -0.12 -1.01 9.95 -39.93 -0.40 -1.41 16
28 C -0.10 -0.98 9.77 -39.48 -0.39 -1.37 16
29 C -0.05 -0.54 5.74 -106.83 -0.61 -1.16 16
30 C -0.09 -1.03 9.37 -39.48 -0.37 -1.40 16
31 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16
32 H 0.06 1.05 6.90 -51.93 -0.36 0.69 16
33 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16
34 H 0.36 8.25 5.37 -40.82 -0.22 8.03 16
35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16
36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16
37 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16
38 H 0.07 0.64 7.48 -51.93 -0.39 0.25 16
39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16
40 H 0.10 0.82 7.78 -51.93 -0.40 0.42 16
41 H 0.10 0.80 8.07 -51.93 -0.42 0.38 16
42 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16
43 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16
44 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16
45 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16
46 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16
47 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16
48 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16
LS Contribution 391.50 15.07 5.90 5.90
Total: -1.00 -33.47 391.50 -11.11 -44.57
By element:
Atomic # 1 Polarization: 15.28 SS G_CDS: -7.26 Total: 8.02 kcal
Atomic # 6 Polarization: -7.19 SS G_CDS: -5.13 Total: -12.32 kcal
Atomic # 7 Polarization: -53.70 SS G_CDS: 0.01 Total: -53.68 kcal
Atomic # 8 Polarization: -9.61 SS G_CDS: 0.08 Total: -9.52 kcal
Atomic # 14 Polarization: 21.75 SS G_CDS: -4.71 Total: 17.03 kcal
Total LS contribution 5.90 Total: 5.90 kcal
Total: -33.47 -11.11 -44.57 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000987490182.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.847 kcal
(2) G-P(sol) polarization free energy of solvation -33.466 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.382 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.105 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.571 kcal
(6) G-S(sol) free energy of system = (1) + (5) 23.276 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds