Wall clock time and date at job start Tue Mar 31 2020 22:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 110.00172 * 2 1 4 4 C 1.54331 * 109.87911 * 121.09471 * 2 1 3 5 5 H 1.08996 * 110.87069 * 23.18099 * 4 2 1 6 6 N 1.46499 * 110.71877 * 259.97329 * 4 2 1 7 7 C 1.36932 * 119.99549 * 160.02628 * 6 4 2 8 8 H 1.08003 * 120.00354 * 0.02562 * 7 6 4 9 9 C 1.38817 * 120.00011 * 179.97438 * 7 6 4 10 10 N 1.31619 * 120.00154 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99635 * 0.02562 * 9 7 6 12 12 H 1.48506 * 109.47297 * 269.99668 * 11 9 7 13 13 H 1.48503 * 109.47261 * 149.99848 * 11 9 7 14 14 H 1.48500 * 109.47454 * 29.99841 * 11 9 7 15 15 C 1.55164 * 102.93849 * 141.61325 * 4 2 1 16 16 C 1.54912 * 101.58053 * 324.49392 * 15 4 2 17 17 N 1.47018 * 109.88803 * 238.90202 * 2 1 3 18 18 C 1.34778 * 125.64661 * 61.60510 * 17 2 1 19 19 O 1.21285 * 119.99652 * 0.02562 * 18 17 2 20 20 C 1.50699 * 120.00259 * 180.02562 * 18 17 2 21 21 C 1.50702 * 109.47060 * 180.02562 * 20 18 17 22 22 C 1.39370 * 119.50592 * 90.00525 * 21 20 18 23 23 C 1.36091 * 120.99113 * 179.97438 * 22 21 20 24 24 C 1.40541 * 119.65571 * 0.02562 * 23 22 21 25 25 C 1.40531 * 121.28763 * 180.02562 * 24 23 22 26 26 C 1.36091 * 119.65601 * 180.02562 * 25 24 23 27 27 C 1.39381 * 120.98786 * 359.95030 * 26 25 24 28 28 C 1.36095 * 120.98599 * 0.02562 * 27 26 25 29 29 C 1.40538 * 119.65410 * 0.02562 * 28 27 26 30 30 C 1.36095 * 119.50490 * 269.72389 * 21 20 18 31 31 H 1.09002 * 109.47603 * 298.90438 * 1 2 3 32 32 H 1.09005 * 109.47056 * 58.90695 * 1 2 3 33 33 H 1.09008 * 109.47277 * 178.90335 * 1 2 3 34 34 H 0.96993 * 120.00302 * 340.02593 * 6 4 2 35 35 H 0.96998 * 119.99442 * 179.97438 * 10 9 7 36 36 H 1.08997 * 111.00780 * 82.57414 * 15 4 2 37 37 H 1.09007 * 111.00127 * 206.38688 * 15 4 2 38 38 H 1.09006 * 110.36032 * 155.84768 * 16 15 4 39 39 H 1.08992 * 110.36948 * 278.17565 * 16 15 4 40 40 H 1.08993 * 109.47149 * 300.00235 * 20 18 17 41 41 H 1.09002 * 109.46905 * 60.00034 * 20 18 17 42 42 H 1.08005 * 119.50482 * 359.96989 * 22 21 20 43 43 H 1.08002 * 120.17143 * 179.97438 * 23 22 21 44 44 H 1.07998 * 120.17428 * 359.95157 * 25 24 23 45 45 H 1.08001 * 119.50742 * 179.97438 * 26 25 24 46 46 H 1.07994 * 119.50472 * 180.02562 * 27 26 25 47 47 H 1.07999 * 120.16891 * 179.97438 * 28 27 26 48 48 H 1.08001 * 120.17643 * 0.03136 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0547 -0.7496 1.2428 5 1 1.3063 -1.4459 1.6211 6 7 2.4553 0.1961 2.2876 7 6 2.5573 -0.2226 3.5873 8 1 2.3428 -1.2500 3.8422 9 6 2.9374 0.6732 4.5773 10 7 3.0359 0.2707 5.8266 11 14 3.3090 2.4500 4.1364 12 1 4.7504 2.5870 3.8061 13 1 2.9801 3.3255 5.2899 14 1 2.4921 2.8500 2.9626 15 6 3.2876 -1.5143 0.6925 16 6 2.8144 -1.8795 -0.7367 17 7 2.0301 -0.7141 -1.1838 18 6 1.8075 -0.3621 -2.4656 19 8 1.1436 0.6211 -2.7179 20 6 2.3834 -1.1900 -3.5853 21 6 1.9915 -0.5864 -4.9094 22 6 2.8169 0.3691 -5.4994 23 6 2.4925 0.9334 -6.6946 24 6 1.3078 0.5496 -7.3461 25 6 0.9398 1.1096 -8.5813 26 6 -0.2151 0.7140 -9.1827 27 6 -1.0409 -0.2411 -8.5924 28 6 -0.7165 -0.8054 -7.3972 29 6 0.4679 -0.4212 -6.7455 30 6 0.8397 -0.9867 -5.5138 31 1 -0.3634 0.4967 0.8996 32 1 -0.3633 0.5307 -0.8801 33 1 -0.3634 -1.0275 -0.0197 34 1 2.6483 1.1186 2.0587 35 1 3.3018 0.8966 6.5182 36 1 4.1654 -0.8689 0.6605 37 1 3.4855 -2.4108 1.2801 38 1 3.6717 -2.0338 -1.3921 39 1 2.1886 -2.7714 -0.7128 40 1 3.4700 -1.2080 -3.5021 41 1 1.9972 -2.2073 -3.5207 42 1 3.7276 0.6662 -5.0007 43 1 3.1416 1.6729 -7.1397 44 1 1.5696 1.8511 -9.0503 45 1 -0.4958 1.1463 -10.1318 46 1 -1.9518 -0.5378 -9.0909 47 1 -1.3663 -1.5440 -6.9515 48 1 0.2118 -1.7311 -5.0467 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987490182.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:25 Heat of formation + Delta-G solvation = 23.276244 kcal Electronic energy + Delta-G solvation = -28217.221439 eV Core-core repulsion = 24429.888912 eV Total energy + Delta-G solvation = -3787.332527 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.73302 -39.95318 -37.82284 -36.64539 -34.28700 -33.21193 -32.23581 -31.50676 -30.96966 -29.86497 -29.52307 -27.40960 -25.38891 -23.62922 -23.14752 -22.71094 -22.15790 -21.88237 -20.25898 -18.93644 -17.62788 -17.55058 -17.17873 -16.91205 -16.28884 -16.12154 -15.07125 -14.85600 -14.82194 -14.37677 -14.13092 -14.03101 -13.69216 -13.55647 -13.52222 -13.43164 -12.93306 -12.76940 -12.70874 -12.50350 -12.21759 -12.02330 -11.90977 -11.77164 -11.44150 -11.33458 -11.22072 -11.17581 -11.02805 -10.92371 -10.66744 -10.38134 -10.16822 -10.08386 -9.70760 -9.62280 -8.99641 -8.71034 -8.50033 -8.07126 -7.36758 -5.84343 -3.21587 0.34204 0.80147 1.86782 2.69821 2.71603 3.14921 3.34173 3.38087 3.42694 3.92624 4.32644 4.44387 4.53171 4.61680 4.62541 4.68451 4.79836 4.90134 4.97004 4.98509 5.09753 5.14051 5.18243 5.19447 5.31886 5.32467 5.38383 5.48615 5.54871 5.56623 5.64508 5.75221 5.79365 5.83157 5.87569 5.97772 6.01749 6.03598 6.17947 6.23069 6.32240 6.36502 6.41164 6.49058 6.50299 6.59335 6.63169 6.78229 6.80633 7.66601 7.89694 8.27364 8.34143 9.10858 9.83548 10.01853 11.33315 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.024221 B = 0.002151 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.765215 B =13013.110360 C =13208.568528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.126 3.874 3 H 0.073 0.927 4 C 0.181 3.819 5 H 0.073 0.927 6 N -0.739 5.739 7 C -0.247 4.247 8 H 0.092 0.908 9 C 0.008 3.992 10 N -0.930 5.930 11 Si 0.882 3.118 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.276 1.276 15 C -0.155 4.155 16 C 0.097 3.903 17 N -0.611 5.611 18 C 0.527 3.473 19 O -0.534 6.534 20 C -0.101 4.101 21 C -0.056 4.056 22 C -0.097 4.097 23 C -0.108 4.108 24 C -0.052 4.052 25 C -0.106 4.106 26 C -0.121 4.121 27 C -0.121 4.121 28 C -0.104 4.104 29 C -0.048 4.048 30 C -0.093 4.093 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.363 0.637 35 H 0.261 0.739 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.122 0.878 43 H 0.127 0.873 44 H 0.125 0.875 45 H 0.121 0.879 46 H 0.121 0.879 47 H 0.126 0.874 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.847 -4.851 -29.364 29.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.022 3.978 3 H 0.091 0.909 4 C 0.070 3.930 5 H 0.091 0.909 6 N -0.381 5.381 7 C -0.377 4.377 8 H 0.110 0.890 9 C -0.188 4.188 10 N -0.577 5.577 11 Si 0.712 3.288 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.202 1.202 15 C -0.196 4.196 16 C -0.026 4.026 17 N -0.346 5.346 18 C 0.315 3.685 19 O -0.411 6.411 20 C -0.141 4.141 21 C -0.056 4.056 22 C -0.115 4.115 23 C -0.126 4.126 24 C -0.052 4.052 25 C -0.124 4.124 26 C -0.139 4.139 27 C -0.139 4.139 28 C -0.122 4.122 29 C -0.048 4.048 30 C -0.111 4.111 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.196 0.804 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.140 0.860 43 H 0.144 0.856 44 H 0.143 0.857 45 H 0.139 0.861 46 H 0.139 0.861 47 H 0.144 0.856 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.231 -4.417 -29.317 29.824 hybrid contribution 0.397 1.274 -0.059 1.336 sum -2.834 -3.143 -29.376 29.679 Atomic orbital electron populations 1.22051 0.94704 1.01856 1.02714 1.21882 0.94634 0.96620 0.84678 0.90911 1.21224 0.93890 0.91346 0.86556 0.90899 1.42703 1.82644 1.08180 1.04613 1.19013 1.39630 0.97257 0.81797 0.88997 1.24665 1.01324 0.97626 0.95173 1.69694 1.53674 1.34662 0.99660 0.86591 0.78344 0.86413 0.77437 1.21018 1.21617 1.20223 1.23523 1.00943 1.02007 0.93088 1.22420 0.94676 0.88362 0.97168 1.48600 1.52366 1.28727 1.04900 1.20079 0.80815 0.85462 0.82115 1.90718 1.39746 1.27475 1.83140 1.20715 1.02890 0.99928 0.90532 1.19014 0.95221 0.96844 0.94563 1.20711 0.99609 0.95887 0.95275 1.20955 0.96060 0.99943 0.95646 1.18096 0.95137 0.96835 0.95140 1.21023 0.97256 0.99666 0.94473 1.20831 0.94973 0.97927 1.00146 1.20830 0.99806 0.97332 0.95948 1.21042 0.95863 0.99897 0.95382 1.18040 0.95056 0.96735 0.94996 1.20830 0.95975 1.00041 0.94239 0.91212 0.91928 0.92833 0.80384 0.92940 0.90702 0.90058 0.91147 0.91441 0.87959 0.87976 0.86018 0.85554 0.85710 0.86143 0.86103 0.85638 0.85703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.10 37.15 0.34 -2.13 16 2 C 0.13 2.08 3.21 -66.95 -0.21 1.87 16 3 H 0.07 1.35 7.69 -51.93 -0.40 0.95 16 4 C 0.18 3.25 3.11 -66.09 -0.21 3.04 16 5 H 0.07 1.34 7.84 -51.93 -0.41 0.93 16 6 N -0.74 -16.67 5.05 -51.64 -0.26 -16.93 16 7 C -0.25 -6.65 10.46 -15.06 -0.16 -6.81 16 8 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 9 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 10 N -0.93 -28.44 13.97 55.49 0.78 -27.66 16 11 Si 0.88 21.75 27.73 -169.99 -4.71 17.03 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 14 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 15 C -0.15 -2.31 6.77 -24.58 -0.17 -2.48 16 16 C 0.10 1.12 6.69 -2.53 -0.02 1.10 16 17 N -0.61 -8.59 3.06 -163.02 -0.50 -9.09 16 18 C 0.53 7.46 7.64 -10.99 -0.08 7.38 16 19 O -0.53 -9.61 15.08 5.55 0.08 -9.52 16 20 C -0.10 -1.01 4.81 -29.03 -0.14 -1.15 16 21 C -0.06 -0.63 4.34 -104.97 -0.46 -1.08 16 22 C -0.10 -1.05 9.58 -39.93 -0.38 -1.43 16 23 C -0.11 -1.12 9.77 -39.49 -0.39 -1.50 16 24 C -0.05 -0.57 5.74 -106.84 -0.61 -1.18 16 25 C -0.11 -0.96 9.77 -39.49 -0.39 -1.35 16 26 C -0.12 -0.99 9.95 -39.93 -0.40 -1.39 16 27 C -0.12 -1.01 9.95 -39.93 -0.40 -1.41 16 28 C -0.10 -0.98 9.77 -39.48 -0.39 -1.37 16 29 C -0.05 -0.54 5.74 -106.83 -0.61 -1.16 16 30 C -0.09 -1.03 9.37 -39.48 -0.37 -1.40 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.06 1.05 6.90 -51.93 -0.36 0.69 16 33 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 34 H 0.36 8.25 5.37 -40.82 -0.22 8.03 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.07 0.64 7.48 -51.93 -0.39 0.25 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.10 0.82 7.78 -51.93 -0.40 0.42 16 41 H 0.10 0.80 8.07 -51.93 -0.42 0.38 16 42 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 43 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 44 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 45 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 46 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 47 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 48 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 391.50 15.07 5.90 5.90 Total: -1.00 -33.47 391.50 -11.11 -44.57 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -7.26 Total: 8.02 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -5.13 Total: -12.32 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 0.01 Total: -53.68 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.08 Total: -9.52 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.71 Total: 17.03 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.47 -11.11 -44.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987490182.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.847 kcal (2) G-P(sol) polarization free energy of solvation -33.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds