Wall clock time and date at job start Tue Mar 31 2020 22:10:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 H 1.08999 * 110.00172 * 2 1
4 4 C 1.54331 * 109.87911 * 121.09471 * 2 1 3
5 5 H 1.08996 * 110.87069 * 23.18099 * 4 2 1
6 6 N 1.46499 * 110.71877 * 259.97329 * 4 2 1
7 7 C 1.36932 * 119.99549 * 160.02628 * 6 4 2
8 8 H 1.08003 * 120.00354 * 0.02562 * 7 6 4
9 9 C 1.38817 * 120.00011 * 179.97438 * 7 6 4
10 10 N 1.31619 * 120.00154 * 180.02562 * 9 7 6
11 11 Si 1.86798 * 119.99635 * 0.02562 * 9 7 6
12 12 H 1.48506 * 109.47297 * 269.99668 * 11 9 7
13 13 H 1.48503 * 109.47261 * 149.99848 * 11 9 7
14 14 H 1.48500 * 109.47454 * 29.99841 * 11 9 7
15 15 C 1.55164 * 102.93849 * 141.61325 * 4 2 1
16 16 C 1.54912 * 101.58053 * 324.49392 * 15 4 2
17 17 N 1.47018 * 109.88803 * 238.90202 * 2 1 3
18 18 C 1.34778 * 125.64661 * 61.60510 * 17 2 1
19 19 O 1.21285 * 119.99652 * 0.02562 * 18 17 2
20 20 C 1.50699 * 120.00259 * 180.02562 * 18 17 2
21 21 C 1.50702 * 109.47060 * 180.02562 * 20 18 17
22 22 C 1.39370 * 119.50592 * 90.00525 * 21 20 18
23 23 C 1.36091 * 120.99113 * 179.97438 * 22 21 20
24 24 C 1.40541 * 119.65571 * 0.02562 * 23 22 21
25 25 C 1.40531 * 121.28763 * 180.02562 * 24 23 22
26 26 C 1.36091 * 119.65601 * 180.02562 * 25 24 23
27 27 C 1.39381 * 120.98786 * 359.95030 * 26 25 24
28 28 C 1.36095 * 120.98599 * 0.02562 * 27 26 25
29 29 C 1.40538 * 119.65410 * 0.02562 * 28 27 26
30 30 C 1.36095 * 119.50490 * 269.72389 * 21 20 18
31 31 H 1.09002 * 109.47603 * 298.90438 * 1 2 3
32 32 H 1.09005 * 109.47056 * 58.90695 * 1 2 3
33 33 H 1.09008 * 109.47277 * 178.90335 * 1 2 3
34 34 H 0.96993 * 120.00302 * 340.02593 * 6 4 2
35 35 H 0.96998 * 119.99442 * 179.97438 * 10 9 7
36 36 H 1.08997 * 111.00780 * 82.57414 * 15 4 2
37 37 H 1.09007 * 111.00127 * 206.38688 * 15 4 2
38 38 H 1.09006 * 110.36032 * 155.84768 * 16 15 4
39 39 H 1.08992 * 110.36948 * 278.17565 * 16 15 4
40 40 H 1.08993 * 109.47149 * 300.00235 * 20 18 17
41 41 H 1.09002 * 109.46905 * 60.00034 * 20 18 17
42 42 H 1.08005 * 119.50482 * 359.96989 * 22 21 20
43 43 H 1.08002 * 120.17143 * 179.97438 * 23 22 21
44 44 H 1.07998 * 120.17428 * 359.95157 * 25 24 23
45 45 H 1.08001 * 119.50742 * 179.97438 * 26 25 24
46 46 H 1.07994 * 119.50472 * 180.02562 * 27 26 25
47 47 H 1.07999 * 120.16891 * 179.97438 * 28 27 26
48 48 H 1.08001 * 120.17643 * 0.03136 * 30 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.9028 1.0242 0.0000
4 6 2.0547 -0.7496 1.2428
5 1 1.3063 -1.4459 1.6211
6 7 2.4553 0.1961 2.2876
7 6 2.5573 -0.2226 3.5873
8 1 2.3428 -1.2500 3.8422
9 6 2.9374 0.6732 4.5773
10 7 3.0359 0.2707 5.8266
11 14 3.3090 2.4500 4.1364
12 1 4.7504 2.5870 3.8061
13 1 2.9801 3.3255 5.2899
14 1 2.4921 2.8500 2.9626
15 6 3.2876 -1.5143 0.6925
16 6 2.8144 -1.8795 -0.7367
17 7 2.0301 -0.7141 -1.1838
18 6 1.8075 -0.3621 -2.4656
19 8 1.1436 0.6211 -2.7179
20 6 2.3834 -1.1900 -3.5853
21 6 1.9915 -0.5864 -4.9094
22 6 2.8169 0.3691 -5.4994
23 6 2.4925 0.9334 -6.6946
24 6 1.3078 0.5496 -7.3461
25 6 0.9398 1.1096 -8.5813
26 6 -0.2151 0.7140 -9.1827
27 6 -1.0409 -0.2411 -8.5924
28 6 -0.7165 -0.8054 -7.3972
29 6 0.4679 -0.4212 -6.7455
30 6 0.8397 -0.9867 -5.5138
31 1 -0.3634 0.4967 0.8996
32 1 -0.3633 0.5307 -0.8801
33 1 -0.3634 -1.0275 -0.0197
34 1 2.6483 1.1186 2.0587
35 1 3.3018 0.8966 6.5182
36 1 4.1654 -0.8689 0.6605
37 1 3.4855 -2.4108 1.2801
38 1 3.6717 -2.0338 -1.3921
39 1 2.1886 -2.7714 -0.7128
40 1 3.4700 -1.2080 -3.5021
41 1 1.9972 -2.2073 -3.5207
42 1 3.7276 0.6662 -5.0007
43 1 3.1416 1.6729 -7.1397
44 1 1.5696 1.8511 -9.0503
45 1 -0.4958 1.1463 -10.1318
46 1 -1.9518 -0.5378 -9.0909
47 1 -1.3663 -1.5440 -6.9515
48 1 0.2118 -1.7311 -5.0467
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000987490182.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:10:25
Heat of formation + Delta-G solvation = 4.895304 kcal
Electronic energy + Delta-G solvation = -28218.018497 eV
Core-core repulsion = 24429.888912 eV
Total energy + Delta-G solvation = -3788.129584 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 338.174 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-41.57591 -40.96314 -38.99111 -37.46762 -36.00984 -34.00782 -33.59324 -32.80777
-32.12389 -31.18159 -30.36094 -28.24599 -26.89969 -24.64396 -24.28762 -23.98866
-22.88292 -22.79510 -21.70132 -20.19801 -19.42222 -18.28574 -18.06940 -17.83557
-17.32159 -17.05516 -16.42826 -16.05274 -15.86998 -15.59571 -15.33589 -15.04799
-14.74715 -14.67832 -14.46094 -14.37005 -14.21580 -14.00061 -13.76874 -13.57549
-13.42283 -13.35539 -13.05969 -12.88797 -12.70269 -12.57936 -12.49863 -12.23756
-12.12636 -12.00016 -11.86874 -11.81888 -11.69522 -11.54319 -10.99350 -10.92360
-10.75743 -9.65685 -9.44090 -9.32525 -8.77407 -8.02893 -5.36570 -0.35774
0.07629 1.14662 1.37680 1.38418 1.45394 1.66065 1.85286 2.21099
2.46627 3.18627 3.27259 3.51674 3.56442 3.61903 3.73143 3.82497
3.97999 4.04874 4.07631 4.12401 4.15699 4.30532 4.34317 4.36839
4.40966 4.46251 4.47986 4.52125 4.62743 4.65854 4.67923 4.77660
4.89596 4.93079 5.01830 5.05801 5.17245 5.20946 5.24368 5.32776
5.34397 5.36838 5.44695 5.56306 5.65348 5.68487 5.77038 5.94995
6.12842 6.20858 6.59735 7.04962 7.19381 7.80529 7.98007 9.17896
Molecular weight = 338.17amu
Principal moments of inertia in cm(-1)
A = 0.024221 B = 0.002151 C = 0.002119
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1155.765215 B =13013.110360 C =13208.568528
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.132 3.868
3 H 0.050 0.950
4 C 0.172 3.828
5 H 0.069 0.931
6 N -0.745 5.745
7 C -0.222 4.222
8 H 0.067 0.933
9 C -0.059 4.059
10 N -0.979 5.979
11 Si 0.946 3.054
12 H -0.279 1.279
13 H -0.297 1.297
14 H -0.260 1.260
15 C -0.149 4.149
16 C 0.104 3.896
17 N -0.611 5.611
18 C 0.525 3.475
19 O -0.579 6.579
20 C -0.090 4.090
21 C -0.071 4.071
22 C -0.114 4.114
23 C -0.116 4.116
24 C -0.075 4.075
25 C -0.118 4.118
26 C -0.124 4.124
27 C -0.123 4.123
28 C -0.120 4.120
29 C -0.072 4.072
30 C -0.105 4.105
31 H 0.058 0.942
32 H 0.052 0.948
33 H 0.067 0.933
34 H 0.362 0.638
35 H 0.257 0.743
36 H 0.063 0.937
37 H 0.085 0.915
38 H 0.107 0.893
39 H 0.093 0.907
40 H 0.128 0.872
41 H 0.130 0.870
42 H 0.132 0.868
43 H 0.145 0.855
44 H 0.144 0.856
45 H 0.147 0.853
46 H 0.145 0.855
47 H 0.139 0.861
48 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.636 -5.504 -32.456 33.025
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C 0.027 3.973
3 H 0.068 0.932
4 C 0.063 3.937
5 H 0.087 0.913
6 N -0.388 5.388
7 C -0.353 4.353
8 H 0.085 0.915
9 C -0.251 4.251
10 N -0.629 5.629
11 Si 0.774 3.226
12 H -0.205 1.205
13 H -0.224 1.224
14 H -0.185 1.185
15 C -0.190 4.190
16 C -0.017 4.017
17 N -0.345 5.345
18 C 0.316 3.684
19 O -0.458 6.458
20 C -0.129 4.129
21 C -0.072 4.072
22 C -0.132 4.132
23 C -0.134 4.134
24 C -0.075 4.075
25 C -0.136 4.136
26 C -0.141 4.141
27 C -0.141 4.141
28 C -0.138 4.138
29 C -0.072 4.072
30 C -0.123 4.123
31 H 0.077 0.923
32 H 0.071 0.929
33 H 0.086 0.914
34 H 0.196 0.804
35 H 0.066 0.934
36 H 0.082 0.918
37 H 0.103 0.897
38 H 0.125 0.875
39 H 0.111 0.889
40 H 0.146 0.854
41 H 0.148 0.852
42 H 0.150 0.850
43 H 0.163 0.837
44 H 0.162 0.838
45 H 0.164 0.836
46 H 0.163 0.837
47 H 0.157 0.843
48 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges -3.015 -5.111 -32.478 33.016
hybrid contribution 0.243 1.411 0.787 1.634
sum -2.773 -3.699 -31.692 32.027
Atomic orbital electron populations
1.21955 0.94421 1.02462 1.01629 1.21579 0.94781 0.95570 0.85381
0.93197 1.21425 0.95376 0.90890 0.86025 0.91261 1.42714 1.82968
1.09027 1.04089 1.18981 1.36842 0.95969 0.83539 0.91478 1.25378
1.02718 1.01834 0.95150 1.69852 1.56270 1.35992 1.00826 0.85552
0.78426 0.81385 0.77247 1.20500 1.22412 1.18527 1.23362 0.98787
1.01340 0.95467 1.22568 0.96082 0.87909 0.95176 1.48647 1.52443
1.29115 1.04287 1.20839 0.79936 0.85127 0.82538 1.90704 1.41802
1.29615 1.83724 1.20747 1.04186 1.00120 0.87854 1.19213 0.95482
0.97292 0.95179 1.20955 1.00263 0.96270 0.95753 1.21251 0.96253
1.00176 0.95691 1.18430 0.95588 0.97343 0.96149 1.21321 0.98050
1.00118 0.94072 1.21215 0.94452 0.97484 1.00983 1.21206 1.00558
0.96748 0.95551 1.21302 0.95789 1.00679 0.96048 1.18364 0.95987
0.97326 0.95541 1.21063 0.96265 1.00502 0.94503 0.92310 0.92925
0.91351 0.80443 0.93388 0.91783 0.89673 0.87453 0.88885 0.85418
0.85168 0.85009 0.83748 0.83832 0.83569 0.83683 0.84271 0.84678
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.59 9.10 71.98 0.65 -3.94 16
2 C 0.13 4.24 3.21 45.34 0.15 4.38 16
3 H 0.05 1.84 7.69 -2.39 -0.02 1.83 16
4 C 0.17 6.00 3.11 46.19 0.14 6.15 16
5 H 0.07 2.48 7.84 -2.39 -0.02 2.46 16
6 N -0.75 -33.41 5.05 -317.31 -1.60 -35.01 16
7 C -0.22 -12.10 10.46 84.04 0.88 -11.22 16
8 H 0.07 3.93 8.06 -2.91 -0.02 3.91 16
9 C -0.06 -3.40 5.50 84.86 0.47 -2.93 16
10 N -0.98 -61.43 13.97 21.65 0.30 -61.13 16
11 Si 0.95 45.48 27.73 68.60 1.90 47.38 16
12 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16
13 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16
14 H -0.26 -11.64 6.52 99.48 0.65 -11.00 16
15 C -0.15 -4.14 6.77 31.99 0.22 -3.92 16
16 C 0.10 2.00 6.69 86.86 0.58 2.58 16
17 N -0.61 -15.69 3.06 -788.06 -2.42 -18.10 16
18 C 0.53 13.77 7.64 87.66 0.67 14.44 16
19 O -0.58 -20.49 15.08 -3.05 -0.05 -20.54 16
20 C -0.09 -1.51 4.81 29.10 0.14 -1.37 16
21 C -0.07 -1.49 4.34 -20.09 -0.09 -1.57 16
22 C -0.11 -2.36 9.58 22.04 0.21 -2.15 16
23 C -0.12 -2.30 9.77 22.33 0.22 -2.08 16
24 C -0.08 -1.59 5.74 -21.30 -0.12 -1.71 16
25 C -0.12 -1.97 9.77 22.33 0.22 -1.75 16
26 C -0.12 -1.77 9.95 22.05 0.22 -1.55 16
27 C -0.12 -1.81 9.95 22.05 0.22 -1.60 16
28 C -0.12 -2.15 9.77 22.33 0.22 -1.93 16
29 C -0.07 -1.58 5.74 -21.30 -0.12 -1.70 16
30 C -0.11 -2.24 9.37 22.33 0.21 -2.03 16
31 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16
32 H 0.05 1.76 6.90 -2.38 -0.02 1.74 16
33 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16
34 H 0.36 16.25 5.37 -92.71 -0.50 15.76 16
35 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16
36 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16
37 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16
38 H 0.11 1.37 7.48 -2.38 -0.02 1.35 16
39 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16
40 H 0.13 1.51 7.78 -2.39 -0.02 1.49 16
41 H 0.13 1.47 8.07 -2.39 -0.02 1.45 16
42 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16
43 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16
44 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16
45 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16
46 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16
47 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16
48 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16
Total: -1.00 -75.25 391.50 3.62 -71.63
By element:
Atomic # 1 Polarization: 29.28 SS G_CDS: 0.40 Total: 29.68 kcal
Atomic # 6 Polarization: -18.99 SS G_CDS: 5.08 Total: -13.91 kcal
Atomic # 7 Polarization: -110.53 SS G_CDS: -3.72 Total: -114.24 kcal
Atomic # 8 Polarization: -20.49 SS G_CDS: -0.05 Total: -20.54 kcal
Atomic # 14 Polarization: 45.48 SS G_CDS: 1.90 Total: 47.38 kcal
Total: -75.25 3.62 -71.63 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000987490182.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 76.526 kcal
(2) G-P(sol) polarization free energy of solvation -75.250 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.276 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.619 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.631 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.895 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds