Wall clock time and date at job start Tue Mar 31 2020 22:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 110.00172 * 2 1 4 4 C 1.54331 * 109.87911 * 121.09471 * 2 1 3 5 5 H 1.08996 * 110.87069 * 23.18099 * 4 2 1 6 6 N 1.46499 * 110.71877 * 259.97329 * 4 2 1 7 7 C 1.36932 * 119.99549 * 160.02628 * 6 4 2 8 8 H 1.08003 * 120.00354 * 0.02562 * 7 6 4 9 9 C 1.38817 * 120.00011 * 179.97438 * 7 6 4 10 10 N 1.31619 * 120.00154 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99635 * 0.02562 * 9 7 6 12 12 H 1.48506 * 109.47297 * 269.99668 * 11 9 7 13 13 H 1.48503 * 109.47261 * 149.99848 * 11 9 7 14 14 H 1.48500 * 109.47454 * 29.99841 * 11 9 7 15 15 C 1.55164 * 102.93849 * 141.61325 * 4 2 1 16 16 C 1.54912 * 101.58053 * 324.49392 * 15 4 2 17 17 N 1.47018 * 109.88803 * 238.90202 * 2 1 3 18 18 C 1.34778 * 125.64661 * 61.60510 * 17 2 1 19 19 O 1.21285 * 119.99652 * 0.02562 * 18 17 2 20 20 C 1.50699 * 120.00259 * 180.02562 * 18 17 2 21 21 C 1.50702 * 109.47060 * 180.02562 * 20 18 17 22 22 C 1.39370 * 119.50592 * 90.00525 * 21 20 18 23 23 C 1.36091 * 120.99113 * 179.97438 * 22 21 20 24 24 C 1.40541 * 119.65571 * 0.02562 * 23 22 21 25 25 C 1.40531 * 121.28763 * 180.02562 * 24 23 22 26 26 C 1.36091 * 119.65601 * 180.02562 * 25 24 23 27 27 C 1.39381 * 120.98786 * 359.95030 * 26 25 24 28 28 C 1.36095 * 120.98599 * 0.02562 * 27 26 25 29 29 C 1.40538 * 119.65410 * 0.02562 * 28 27 26 30 30 C 1.36095 * 119.50490 * 269.72389 * 21 20 18 31 31 H 1.09002 * 109.47603 * 298.90438 * 1 2 3 32 32 H 1.09005 * 109.47056 * 58.90695 * 1 2 3 33 33 H 1.09008 * 109.47277 * 178.90335 * 1 2 3 34 34 H 0.96993 * 120.00302 * 340.02593 * 6 4 2 35 35 H 0.96998 * 119.99442 * 179.97438 * 10 9 7 36 36 H 1.08997 * 111.00780 * 82.57414 * 15 4 2 37 37 H 1.09007 * 111.00127 * 206.38688 * 15 4 2 38 38 H 1.09006 * 110.36032 * 155.84768 * 16 15 4 39 39 H 1.08992 * 110.36948 * 278.17565 * 16 15 4 40 40 H 1.08993 * 109.47149 * 300.00235 * 20 18 17 41 41 H 1.09002 * 109.46905 * 60.00034 * 20 18 17 42 42 H 1.08005 * 119.50482 * 359.96989 * 22 21 20 43 43 H 1.08002 * 120.17143 * 179.97438 * 23 22 21 44 44 H 1.07998 * 120.17428 * 359.95157 * 25 24 23 45 45 H 1.08001 * 119.50742 * 179.97438 * 26 25 24 46 46 H 1.07994 * 119.50472 * 180.02562 * 27 26 25 47 47 H 1.07999 * 120.16891 * 179.97438 * 28 27 26 48 48 H 1.08001 * 120.17643 * 0.03136 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0547 -0.7496 1.2428 5 1 1.3063 -1.4459 1.6211 6 7 2.4553 0.1961 2.2876 7 6 2.5573 -0.2226 3.5873 8 1 2.3428 -1.2500 3.8422 9 6 2.9374 0.6732 4.5773 10 7 3.0359 0.2707 5.8266 11 14 3.3090 2.4500 4.1364 12 1 4.7504 2.5870 3.8061 13 1 2.9801 3.3255 5.2899 14 1 2.4921 2.8500 2.9626 15 6 3.2876 -1.5143 0.6925 16 6 2.8144 -1.8795 -0.7367 17 7 2.0301 -0.7141 -1.1838 18 6 1.8075 -0.3621 -2.4656 19 8 1.1436 0.6211 -2.7179 20 6 2.3834 -1.1900 -3.5853 21 6 1.9915 -0.5864 -4.9094 22 6 2.8169 0.3691 -5.4994 23 6 2.4925 0.9334 -6.6946 24 6 1.3078 0.5496 -7.3461 25 6 0.9398 1.1096 -8.5813 26 6 -0.2151 0.7140 -9.1827 27 6 -1.0409 -0.2411 -8.5924 28 6 -0.7165 -0.8054 -7.3972 29 6 0.4679 -0.4212 -6.7455 30 6 0.8397 -0.9867 -5.5138 31 1 -0.3634 0.4967 0.8996 32 1 -0.3633 0.5307 -0.8801 33 1 -0.3634 -1.0275 -0.0197 34 1 2.6483 1.1186 2.0587 35 1 3.3018 0.8966 6.5182 36 1 4.1654 -0.8689 0.6605 37 1 3.4855 -2.4108 1.2801 38 1 3.6717 -2.0338 -1.3921 39 1 2.1886 -2.7714 -0.7128 40 1 3.4700 -1.2080 -3.5021 41 1 1.9972 -2.2073 -3.5207 42 1 3.7276 0.6662 -5.0007 43 1 3.1416 1.6729 -7.1397 44 1 1.5696 1.8511 -9.0503 45 1 -0.4958 1.1463 -10.1318 46 1 -1.9518 -0.5378 -9.0909 47 1 -1.3663 -1.5440 -6.9515 48 1 0.2118 -1.7311 -5.0467 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987490182.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:25 Heat of formation + Delta-G solvation = 4.895304 kcal Electronic energy + Delta-G solvation = -28218.018497 eV Core-core repulsion = 24429.888912 eV Total energy + Delta-G solvation = -3788.129584 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.57591 -40.96314 -38.99111 -37.46762 -36.00984 -34.00782 -33.59324 -32.80777 -32.12389 -31.18159 -30.36094 -28.24599 -26.89969 -24.64396 -24.28762 -23.98866 -22.88292 -22.79510 -21.70132 -20.19801 -19.42222 -18.28574 -18.06940 -17.83557 -17.32159 -17.05516 -16.42826 -16.05274 -15.86998 -15.59571 -15.33589 -15.04799 -14.74715 -14.67832 -14.46094 -14.37005 -14.21580 -14.00061 -13.76874 -13.57549 -13.42283 -13.35539 -13.05969 -12.88797 -12.70269 -12.57936 -12.49863 -12.23756 -12.12636 -12.00016 -11.86874 -11.81888 -11.69522 -11.54319 -10.99350 -10.92360 -10.75743 -9.65685 -9.44090 -9.32525 -8.77407 -8.02893 -5.36570 -0.35774 0.07629 1.14662 1.37680 1.38418 1.45394 1.66065 1.85286 2.21099 2.46627 3.18627 3.27259 3.51674 3.56442 3.61903 3.73143 3.82497 3.97999 4.04874 4.07631 4.12401 4.15699 4.30532 4.34317 4.36839 4.40966 4.46251 4.47986 4.52125 4.62743 4.65854 4.67923 4.77660 4.89596 4.93079 5.01830 5.05801 5.17245 5.20946 5.24368 5.32776 5.34397 5.36838 5.44695 5.56306 5.65348 5.68487 5.77038 5.94995 6.12842 6.20858 6.59735 7.04962 7.19381 7.80529 7.98007 9.17896 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.024221 B = 0.002151 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.765215 B =13013.110360 C =13208.568528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.132 3.868 3 H 0.050 0.950 4 C 0.172 3.828 5 H 0.069 0.931 6 N -0.745 5.745 7 C -0.222 4.222 8 H 0.067 0.933 9 C -0.059 4.059 10 N -0.979 5.979 11 Si 0.946 3.054 12 H -0.279 1.279 13 H -0.297 1.297 14 H -0.260 1.260 15 C -0.149 4.149 16 C 0.104 3.896 17 N -0.611 5.611 18 C 0.525 3.475 19 O -0.579 6.579 20 C -0.090 4.090 21 C -0.071 4.071 22 C -0.114 4.114 23 C -0.116 4.116 24 C -0.075 4.075 25 C -0.118 4.118 26 C -0.124 4.124 27 C -0.123 4.123 28 C -0.120 4.120 29 C -0.072 4.072 30 C -0.105 4.105 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.362 0.638 35 H 0.257 0.743 36 H 0.063 0.937 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.128 0.872 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.145 0.855 44 H 0.144 0.856 45 H 0.147 0.853 46 H 0.145 0.855 47 H 0.139 0.861 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.636 -5.504 -32.456 33.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.027 3.973 3 H 0.068 0.932 4 C 0.063 3.937 5 H 0.087 0.913 6 N -0.388 5.388 7 C -0.353 4.353 8 H 0.085 0.915 9 C -0.251 4.251 10 N -0.629 5.629 11 Si 0.774 3.226 12 H -0.205 1.205 13 H -0.224 1.224 14 H -0.185 1.185 15 C -0.190 4.190 16 C -0.017 4.017 17 N -0.345 5.345 18 C 0.316 3.684 19 O -0.458 6.458 20 C -0.129 4.129 21 C -0.072 4.072 22 C -0.132 4.132 23 C -0.134 4.134 24 C -0.075 4.075 25 C -0.136 4.136 26 C -0.141 4.141 27 C -0.141 4.141 28 C -0.138 4.138 29 C -0.072 4.072 30 C -0.123 4.123 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.196 0.804 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.125 0.875 39 H 0.111 0.889 40 H 0.146 0.854 41 H 0.148 0.852 42 H 0.150 0.850 43 H 0.163 0.837 44 H 0.162 0.838 45 H 0.164 0.836 46 H 0.163 0.837 47 H 0.157 0.843 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.015 -5.111 -32.478 33.016 hybrid contribution 0.243 1.411 0.787 1.634 sum -2.773 -3.699 -31.692 32.027 Atomic orbital electron populations 1.21955 0.94421 1.02462 1.01629 1.21579 0.94781 0.95570 0.85381 0.93197 1.21425 0.95376 0.90890 0.86025 0.91261 1.42714 1.82968 1.09027 1.04089 1.18981 1.36842 0.95969 0.83539 0.91478 1.25378 1.02718 1.01834 0.95150 1.69852 1.56270 1.35992 1.00826 0.85552 0.78426 0.81385 0.77247 1.20500 1.22412 1.18527 1.23362 0.98787 1.01340 0.95467 1.22568 0.96082 0.87909 0.95176 1.48647 1.52443 1.29115 1.04287 1.20839 0.79936 0.85127 0.82538 1.90704 1.41802 1.29615 1.83724 1.20747 1.04186 1.00120 0.87854 1.19213 0.95482 0.97292 0.95179 1.20955 1.00263 0.96270 0.95753 1.21251 0.96253 1.00176 0.95691 1.18430 0.95588 0.97343 0.96149 1.21321 0.98050 1.00118 0.94072 1.21215 0.94452 0.97484 1.00983 1.21206 1.00558 0.96748 0.95551 1.21302 0.95789 1.00679 0.96048 1.18364 0.95987 0.97326 0.95541 1.21063 0.96265 1.00502 0.94503 0.92310 0.92925 0.91351 0.80443 0.93388 0.91783 0.89673 0.87453 0.88885 0.85418 0.85168 0.85009 0.83748 0.83832 0.83569 0.83683 0.84271 0.84678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.59 9.10 71.98 0.65 -3.94 16 2 C 0.13 4.24 3.21 45.34 0.15 4.38 16 3 H 0.05 1.84 7.69 -2.39 -0.02 1.83 16 4 C 0.17 6.00 3.11 46.19 0.14 6.15 16 5 H 0.07 2.48 7.84 -2.39 -0.02 2.46 16 6 N -0.75 -33.41 5.05 -317.31 -1.60 -35.01 16 7 C -0.22 -12.10 10.46 84.04 0.88 -11.22 16 8 H 0.07 3.93 8.06 -2.91 -0.02 3.91 16 9 C -0.06 -3.40 5.50 84.86 0.47 -2.93 16 10 N -0.98 -61.43 13.97 21.65 0.30 -61.13 16 11 Si 0.95 45.48 27.73 68.60 1.90 47.38 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 13 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 14 H -0.26 -11.64 6.52 99.48 0.65 -11.00 16 15 C -0.15 -4.14 6.77 31.99 0.22 -3.92 16 16 C 0.10 2.00 6.69 86.86 0.58 2.58 16 17 N -0.61 -15.69 3.06 -788.06 -2.42 -18.10 16 18 C 0.53 13.77 7.64 87.66 0.67 14.44 16 19 O -0.58 -20.49 15.08 -3.05 -0.05 -20.54 16 20 C -0.09 -1.51 4.81 29.10 0.14 -1.37 16 21 C -0.07 -1.49 4.34 -20.09 -0.09 -1.57 16 22 C -0.11 -2.36 9.58 22.04 0.21 -2.15 16 23 C -0.12 -2.30 9.77 22.33 0.22 -2.08 16 24 C -0.08 -1.59 5.74 -21.30 -0.12 -1.71 16 25 C -0.12 -1.97 9.77 22.33 0.22 -1.75 16 26 C -0.12 -1.77 9.95 22.05 0.22 -1.55 16 27 C -0.12 -1.81 9.95 22.05 0.22 -1.60 16 28 C -0.12 -2.15 9.77 22.33 0.22 -1.93 16 29 C -0.07 -1.58 5.74 -21.30 -0.12 -1.70 16 30 C -0.11 -2.24 9.37 22.33 0.21 -2.03 16 31 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.05 1.76 6.90 -2.38 -0.02 1.74 16 33 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 34 H 0.36 16.25 5.37 -92.71 -0.50 15.76 16 35 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 36 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 38 H 0.11 1.37 7.48 -2.38 -0.02 1.35 16 39 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.13 1.51 7.78 -2.39 -0.02 1.49 16 41 H 0.13 1.47 8.07 -2.39 -0.02 1.45 16 42 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 43 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 44 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 45 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 46 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 47 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 48 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -75.25 391.50 3.62 -71.63 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: 0.40 Total: 29.68 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: 5.08 Total: -13.91 kcal Atomic # 7 Polarization: -110.53 SS G_CDS: -3.72 Total: -114.24 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.05 Total: -20.54 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.90 Total: 47.38 kcal Total: -75.25 3.62 -71.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987490182.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.526 kcal (2) G-P(sol) polarization free energy of solvation -75.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds