Wall clock time and date at job start Tue Mar 31 2020 22:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.99671 * 2 1 4 4 C 1.54332 * 109.99338 * 238.96032 * 2 1 3 5 5 H 1.08997 * 110.51789 * 336.98223 * 4 2 1 6 6 N 1.46501 * 111.00128 * 100.12495 * 4 2 1 7 7 C 1.36937 * 120.00245 * 200.23733 * 6 4 2 8 8 H 1.07995 * 119.99821 * 0.02562 * 7 6 4 9 9 C 1.38815 * 120.00193 * 180.02562 * 7 6 4 10 10 N 1.31615 * 119.99682 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99944 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47127 * 60.00280 * 11 9 7 13 13 H 1.48503 * 109.46762 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47441 * 299.99603 * 11 9 7 15 15 C 1.55148 * 103.02540 * 218.66464 * 4 2 1 16 16 C 1.54910 * 101.57922 * 35.30710 * 15 4 2 17 17 N 1.47016 * 109.88398 * 121.09422 * 2 1 3 18 18 C 1.34784 * 125.65012 * 298.40084 * 17 2 1 19 19 O 1.21276 * 119.99618 * 359.70967 * 18 17 2 20 20 C 1.50695 * 120.00163 * 179.71582 * 18 17 2 21 21 C 1.50696 * 109.46962 * 179.97438 * 20 18 17 22 22 C 1.39375 * 119.50832 * 90.00054 * 21 20 18 23 23 C 1.36092 * 120.99151 * 180.02562 * 22 21 20 24 24 C 1.40540 * 119.65438 * 0.02562 * 23 22 21 25 25 C 1.40544 * 121.28471 * 180.22923 * 24 23 22 26 26 C 1.36093 * 119.65040 * 180.24079 * 25 24 23 27 27 C 1.39384 * 120.98931 * 359.49271 * 26 25 24 28 28 C 1.36092 * 120.98495 * 0.28689 * 27 26 25 29 29 C 1.40540 * 119.65862 * 359.97039 * 28 27 26 30 30 C 1.36089 * 119.50641 * 269.99425 * 21 20 18 31 31 H 1.08998 * 109.47693 * 300.35814 * 1 2 3 32 32 H 1.09000 * 109.47323 * 60.36396 * 1 2 3 33 33 H 1.09001 * 109.47178 * 180.35689 * 1 2 3 34 34 H 0.97001 * 119.99767 * 20.23618 * 6 4 2 35 35 H 0.97007 * 119.99997 * 180.02562 * 10 9 7 36 36 H 1.09006 * 111.00599 * 277.23656 * 15 4 2 37 37 H 1.08996 * 111.01119 * 153.38159 * 15 4 2 38 38 H 1.09004 * 110.37004 * 204.14934 * 16 15 4 39 39 H 1.08996 * 110.46274 * 81.87722 * 16 15 4 40 40 H 1.08995 * 109.47275 * 59.99568 * 20 18 17 41 41 H 1.09004 * 109.47118 * 299.99569 * 20 18 17 42 42 H 1.08003 * 119.50497 * 0.03849 * 22 21 20 43 43 H 1.08003 * 120.17258 * 180.02562 * 23 22 21 44 44 H 1.07991 * 120.17557 * 359.97438 * 25 24 23 45 45 H 1.08002 * 119.50817 * 179.78064 * 26 25 24 46 46 H 1.07994 * 119.50460 * 180.25427 * 27 26 25 47 47 H 1.08004 * 120.16799 * 179.97438 * 28 27 26 48 48 H 1.08001 * 120.17539 * 0.02671 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2426 5 1 1.3053 -1.4406 -1.6197 6 7 2.4631 0.1938 -2.2892 7 6 2.5624 -0.2276 -3.5883 8 1 2.3414 -1.2540 -3.8415 9 6 2.9471 0.6645 -4.5799 10 7 3.2169 1.9151 -4.2712 11 14 3.0833 0.0894 -6.3519 12 1 1.7635 -0.4116 -6.8125 13 1 3.5091 1.2247 -7.2094 14 1 4.0862 -1.0020 -6.4426 15 6 3.2863 -1.5183 -0.6915 16 6 2.8099 -1.8825 0.7368 17 7 2.0300 -0.7140 1.1839 18 6 1.8073 -0.3620 2.4657 19 8 1.1474 0.6238 2.7179 20 6 2.3783 -1.1933 3.5855 21 6 1.9873 -0.5891 4.9095 22 6 0.8023 -0.9902 5.5239 23 6 0.4198 -0.4639 6.7192 24 6 1.2291 0.4990 7.3460 25 6 0.8695 1.0615 8.5827 26 6 1.6756 1.9952 9.1576 27 6 2.8607 2.3963 8.5432 28 6 3.2431 1.8701 7.3478 29 6 2.4337 0.9072 6.7210 30 6 2.7965 0.3401 5.4874 31 1 -0.3634 0.5194 0.8867 32 1 -0.3634 0.5082 -0.8932 33 1 -0.3633 -1.0277 0.0064 34 1 2.6612 1.1157 -2.0619 35 1 3.4854 2.5387 -4.9642 36 1 4.1670 -0.8768 -0.6579 37 1 3.4807 -2.4155 -1.2791 38 1 3.6655 -2.0412 1.3933 39 1 2.1806 -2.7721 0.7134 40 1 3.4649 -1.2159 3.5036 41 1 1.9878 -2.2088 3.5197 42 1 0.1784 -1.7299 5.0443 43 1 -0.5010 -0.7847 7.1838 44 1 -0.0439 0.7575 9.0722 45 1 1.3952 2.4285 10.1063 46 1 3.4844 3.1361 9.0227 47 1 4.1639 2.1908 6.8833 48 1 3.7116 0.6416 4.9995 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987490184.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:30 Heat of formation + Delta-G solvation = 19.150493 kcal Electronic energy + Delta-G solvation = -28136.932386 eV Core-core repulsion = 24349.420953 eV Total energy + Delta-G solvation = -3787.511433 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.67275 -39.85367 -37.70919 -36.57221 -34.13263 -33.15915 -32.17728 -31.36622 -30.86567 -29.71072 -29.16785 -27.31226 -25.22060 -23.57770 -23.20131 -22.87327 -22.10422 -21.84256 -20.11943 -18.79875 -17.51516 -17.26157 -17.08704 -16.83065 -16.32735 -15.79150 -15.06754 -14.91490 -14.71014 -14.33101 -14.09131 -13.76758 -13.58023 -13.53383 -13.46843 -13.37817 -12.93732 -12.86463 -12.64631 -12.27299 -12.14497 -11.94045 -11.70991 -11.60097 -11.38163 -11.15903 -11.15222 -11.03094 -10.97742 -10.84681 -10.59946 -10.28788 -10.11795 -10.03661 -9.78067 -9.55614 -8.95966 -8.65958 -8.39391 -8.01996 -7.05017 -5.82968 -3.13576 0.39287 0.85084 1.91877 2.75644 2.80447 3.24133 3.40187 3.44994 3.46052 3.97835 4.38271 4.49589 4.53242 4.66933 4.71419 4.73050 4.84828 5.00625 5.03177 5.04887 5.18678 5.22152 5.28155 5.31431 5.36875 5.40713 5.47290 5.57783 5.60370 5.66388 5.77803 5.80472 5.88682 5.94036 6.06700 6.08466 6.08564 6.12125 6.28014 6.28883 6.40717 6.44620 6.47065 6.57218 6.60569 6.67894 6.73367 6.85700 6.91323 7.63447 7.77314 8.33831 8.37280 9.45630 10.00313 10.34966 11.39105 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.024946 B = 0.002047 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.151340 B =13673.215154 C =14024.690691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.128 3.872 3 H 0.076 0.924 4 C 0.176 3.824 5 H 0.064 0.936 6 N -0.715 5.715 7 C -0.244 4.244 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.930 5.930 11 Si 0.909 3.091 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.285 1.285 15 C -0.155 4.155 16 C 0.098 3.902 17 N -0.611 5.611 18 C 0.527 3.473 19 O -0.534 6.534 20 C -0.101 4.101 21 C -0.056 4.056 22 C -0.096 4.096 23 C -0.109 4.109 24 C -0.052 4.052 25 C -0.107 4.107 26 C -0.121 4.121 27 C -0.122 4.122 28 C -0.103 4.103 29 C -0.048 4.048 30 C -0.092 4.092 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.386 0.614 35 H 0.257 0.743 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.121 0.879 43 H 0.126 0.874 44 H 0.125 0.875 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.126 0.874 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.640 -7.236 25.607 26.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.024 3.976 3 H 0.094 0.906 4 C 0.064 3.936 5 H 0.081 0.919 6 N -0.355 5.355 7 C -0.375 4.375 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.577 5.577 11 Si 0.740 3.260 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.197 4.197 16 C -0.026 4.026 17 N -0.345 5.345 18 C 0.315 3.685 19 O -0.411 6.411 20 C -0.141 4.141 21 C -0.057 4.057 22 C -0.114 4.114 23 C -0.127 4.127 24 C -0.052 4.052 25 C -0.125 4.125 26 C -0.139 4.139 27 C -0.140 4.140 28 C -0.121 4.121 29 C -0.048 4.048 30 C -0.110 4.110 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.220 0.780 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.139 0.861 43 H 0.144 0.856 44 H 0.143 0.857 45 H 0.138 0.862 46 H 0.139 0.861 47 H 0.144 0.856 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.011 -6.732 25.618 26.564 hybrid contribution 0.259 -0.004 -1.028 1.060 sum -1.752 -6.737 24.590 25.556 Atomic orbital electron populations 1.22033 0.94940 1.01514 1.02684 1.21872 0.94349 0.96908 0.84461 0.90577 1.21231 0.93495 0.91629 0.87204 0.91851 1.42333 1.80753 1.09345 1.03100 1.19147 1.39272 0.95234 0.83844 0.91049 1.24775 1.02067 0.95669 0.98186 1.69656 1.52216 1.03195 1.32667 0.86248 0.77814 0.77293 0.84674 1.21187 1.21684 1.21208 1.23559 1.01408 1.01720 0.92989 1.22396 0.94639 0.88252 0.97294 1.48606 1.52418 1.28518 1.04964 1.20052 0.80834 0.85512 0.82137 1.90716 1.39903 1.27327 1.83137 1.20715 1.02836 0.99939 0.90593 1.19016 0.94941 0.97126 0.94597 1.20693 0.95670 0.99910 0.95142 1.20942 0.99224 0.96702 0.95831 1.18093 0.94640 0.97352 0.95110 1.21015 0.99717 0.97158 0.94599 1.20829 0.95008 0.97864 1.00153 1.20829 0.97006 1.00277 0.95851 1.21057 0.99334 0.96218 0.95492 1.18042 0.94613 0.97198 0.94965 1.20851 0.99995 0.95865 0.94290 0.92014 0.91220 0.93157 0.78001 0.93308 0.90632 0.90576 0.91340 0.91701 0.88032 0.88049 0.86064 0.85594 0.85740 0.86167 0.86103 0.85600 0.85660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.11 37.16 0.34 -2.24 16 2 C 0.13 2.25 3.21 -66.95 -0.22 2.03 16 3 H 0.08 1.53 7.70 -51.93 -0.40 1.13 16 4 C 0.18 3.32 3.11 -66.10 -0.21 3.11 16 5 H 0.06 1.20 7.82 -51.93 -0.41 0.79 16 6 N -0.71 -17.23 5.25 -51.65 -0.27 -17.50 16 7 C -0.24 -6.49 9.98 -15.06 -0.15 -6.64 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 10 N -0.93 -27.57 13.06 55.49 0.72 -26.85 16 11 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 14 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 15 C -0.16 -2.46 6.77 -24.59 -0.17 -2.62 16 16 C 0.10 1.20 6.69 -2.53 -0.02 1.18 16 17 N -0.61 -9.11 3.06 -163.02 -0.50 -9.61 16 18 C 0.53 7.87 7.63 -10.98 -0.08 7.78 16 19 O -0.53 -10.05 15.08 5.56 0.08 -9.96 16 20 C -0.10 -1.07 4.80 -29.04 -0.14 -1.21 16 21 C -0.06 -0.66 4.34 -104.97 -0.46 -1.12 16 22 C -0.10 -1.06 9.58 -39.93 -0.38 -1.44 16 23 C -0.11 -1.15 9.77 -39.49 -0.39 -1.53 16 24 C -0.05 -0.59 5.74 -106.83 -0.61 -1.20 16 25 C -0.11 -1.00 9.77 -39.48 -0.39 -1.39 16 26 C -0.12 -1.04 9.95 -39.93 -0.40 -1.44 16 27 C -0.12 -1.08 9.95 -39.93 -0.40 -1.48 16 28 C -0.10 -1.05 9.77 -39.49 -0.39 -1.43 16 29 C -0.05 -0.57 5.74 -106.83 -0.61 -1.19 16 30 C -0.09 -1.09 9.37 -39.49 -0.37 -1.46 16 31 H 0.06 1.09 6.89 -51.93 -0.36 0.73 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.39 10.09 7.53 -40.82 -0.31 9.78 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 37 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.07 0.68 7.48 -51.93 -0.39 0.29 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.10 0.89 7.77 -51.93 -0.40 0.49 16 41 H 0.10 0.84 8.08 -51.93 -0.42 0.42 16 42 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 43 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 44 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 45 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 46 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 47 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 48 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 394.64 15.07 5.95 5.95 Total: -1.00 -32.66 394.64 -11.46 -44.12 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -7.30 Total: 9.73 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -5.12 Total: -12.68 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -0.05 Total: -53.96 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.08 Total: -9.96 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.66 -11.46 -44.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987490184.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.273 kcal (2) G-P(sol) polarization free energy of solvation -32.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds