Wall clock time and date at job start Tue Mar 31 2020 22:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.99671 * 2 1 4 4 C 1.54332 * 109.99338 * 238.96032 * 2 1 3 5 5 H 1.08997 * 110.51789 * 336.98223 * 4 2 1 6 6 N 1.46501 * 111.00128 * 100.12495 * 4 2 1 7 7 C 1.36937 * 120.00245 * 200.23733 * 6 4 2 8 8 H 1.07995 * 119.99821 * 0.02562 * 7 6 4 9 9 C 1.38815 * 120.00193 * 180.02562 * 7 6 4 10 10 N 1.31615 * 119.99682 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99944 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47127 * 60.00280 * 11 9 7 13 13 H 1.48503 * 109.46762 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47441 * 299.99603 * 11 9 7 15 15 C 1.55148 * 103.02540 * 218.66464 * 4 2 1 16 16 C 1.54910 * 101.57922 * 35.30710 * 15 4 2 17 17 N 1.47016 * 109.88398 * 121.09422 * 2 1 3 18 18 C 1.34784 * 125.65012 * 298.40084 * 17 2 1 19 19 O 1.21276 * 119.99618 * 359.70967 * 18 17 2 20 20 C 1.50695 * 120.00163 * 179.71582 * 18 17 2 21 21 C 1.50696 * 109.46962 * 179.97438 * 20 18 17 22 22 C 1.39375 * 119.50832 * 90.00054 * 21 20 18 23 23 C 1.36092 * 120.99151 * 180.02562 * 22 21 20 24 24 C 1.40540 * 119.65438 * 0.02562 * 23 22 21 25 25 C 1.40544 * 121.28471 * 180.22923 * 24 23 22 26 26 C 1.36093 * 119.65040 * 180.24079 * 25 24 23 27 27 C 1.39384 * 120.98931 * 359.49271 * 26 25 24 28 28 C 1.36092 * 120.98495 * 0.28689 * 27 26 25 29 29 C 1.40540 * 119.65862 * 359.97039 * 28 27 26 30 30 C 1.36089 * 119.50641 * 269.99425 * 21 20 18 31 31 H 1.08998 * 109.47693 * 300.35814 * 1 2 3 32 32 H 1.09000 * 109.47323 * 60.36396 * 1 2 3 33 33 H 1.09001 * 109.47178 * 180.35689 * 1 2 3 34 34 H 0.97001 * 119.99767 * 20.23618 * 6 4 2 35 35 H 0.97007 * 119.99997 * 180.02562 * 10 9 7 36 36 H 1.09006 * 111.00599 * 277.23656 * 15 4 2 37 37 H 1.08996 * 111.01119 * 153.38159 * 15 4 2 38 38 H 1.09004 * 110.37004 * 204.14934 * 16 15 4 39 39 H 1.08996 * 110.46274 * 81.87722 * 16 15 4 40 40 H 1.08995 * 109.47275 * 59.99568 * 20 18 17 41 41 H 1.09004 * 109.47118 * 299.99569 * 20 18 17 42 42 H 1.08003 * 119.50497 * 0.03849 * 22 21 20 43 43 H 1.08003 * 120.17258 * 180.02562 * 23 22 21 44 44 H 1.07991 * 120.17557 * 359.97438 * 25 24 23 45 45 H 1.08002 * 119.50817 * 179.78064 * 26 25 24 46 46 H 1.07994 * 119.50460 * 180.25427 * 27 26 25 47 47 H 1.08004 * 120.16799 * 179.97438 * 28 27 26 48 48 H 1.08001 * 120.17539 * 0.02671 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2426 5 1 1.3053 -1.4406 -1.6197 6 7 2.4631 0.1938 -2.2892 7 6 2.5624 -0.2276 -3.5883 8 1 2.3414 -1.2540 -3.8415 9 6 2.9471 0.6645 -4.5799 10 7 3.2169 1.9151 -4.2712 11 14 3.0833 0.0894 -6.3519 12 1 1.7635 -0.4116 -6.8125 13 1 3.5091 1.2247 -7.2094 14 1 4.0862 -1.0020 -6.4426 15 6 3.2863 -1.5183 -0.6915 16 6 2.8099 -1.8825 0.7368 17 7 2.0300 -0.7140 1.1839 18 6 1.8073 -0.3620 2.4657 19 8 1.1474 0.6238 2.7179 20 6 2.3783 -1.1933 3.5855 21 6 1.9873 -0.5891 4.9095 22 6 0.8023 -0.9902 5.5239 23 6 0.4198 -0.4639 6.7192 24 6 1.2291 0.4990 7.3460 25 6 0.8695 1.0615 8.5827 26 6 1.6756 1.9952 9.1576 27 6 2.8607 2.3963 8.5432 28 6 3.2431 1.8701 7.3478 29 6 2.4337 0.9072 6.7210 30 6 2.7965 0.3401 5.4874 31 1 -0.3634 0.5194 0.8867 32 1 -0.3634 0.5082 -0.8932 33 1 -0.3633 -1.0277 0.0064 34 1 2.6612 1.1157 -2.0619 35 1 3.4854 2.5387 -4.9642 36 1 4.1670 -0.8768 -0.6579 37 1 3.4807 -2.4155 -1.2791 38 1 3.6655 -2.0412 1.3933 39 1 2.1806 -2.7721 0.7134 40 1 3.4649 -1.2159 3.5036 41 1 1.9878 -2.2088 3.5197 42 1 0.1784 -1.7299 5.0443 43 1 -0.5010 -0.7847 7.1838 44 1 -0.0439 0.7575 9.0722 45 1 1.3952 2.4285 10.1063 46 1 3.4844 3.1361 9.0227 47 1 4.1639 2.1908 6.8833 48 1 3.7116 0.6416 4.9995 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987490184.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:29 Heat of formation + Delta-G solvation = 1.648206 kcal Electronic energy + Delta-G solvation = -28137.691342 eV Core-core repulsion = 24349.420953 eV Total energy + Delta-G solvation = -3788.270389 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.56165 -40.93872 -38.93224 -37.45546 -35.89599 -33.99351 -33.45165 -32.67527 -32.10694 -30.84341 -30.32609 -28.22009 -26.84430 -24.89271 -24.32184 -23.97930 -22.88444 -22.80031 -21.55504 -20.06084 -19.09968 -18.25251 -18.03700 -17.81769 -17.39935 -16.90285 -16.44206 -16.14914 -15.63392 -15.45226 -15.42592 -15.10373 -14.77185 -14.59707 -14.47192 -14.32080 -14.21522 -13.94893 -13.65424 -13.45726 -13.34311 -13.12062 -12.95648 -12.86077 -12.62903 -12.56180 -12.51881 -12.21424 -12.11189 -12.07920 -11.86634 -11.70889 -11.69564 -11.52246 -10.95061 -10.89362 -10.74785 -9.63249 -9.43577 -9.02470 -8.77291 -7.93719 -5.23817 -0.35643 0.08082 1.14735 1.49137 1.52094 1.57941 1.67075 1.87085 2.22241 2.57945 3.19009 3.37926 3.57297 3.63145 3.73071 3.78896 3.90379 3.98219 4.07378 4.09412 4.15902 4.20457 4.30022 4.37514 4.39395 4.44070 4.47407 4.51402 4.54674 4.63359 4.66666 4.67878 4.78235 4.90458 4.95158 5.05476 5.06324 5.17876 5.21933 5.25550 5.33725 5.35299 5.37972 5.48730 5.55316 5.56356 5.65329 5.69112 5.95469 6.13152 6.26395 6.62403 7.20715 7.32550 8.05204 8.28794 9.29664 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.024946 B = 0.002047 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.151340 B =13673.215154 C =14024.690691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.134 3.866 3 H 0.039 0.961 4 C 0.169 3.831 5 H 0.069 0.931 6 N -0.731 5.731 7 C -0.236 4.236 8 H 0.084 0.916 9 C -0.078 4.078 10 N -0.972 5.972 11 Si 0.975 3.025 12 H -0.277 1.277 13 H -0.301 1.301 14 H -0.274 1.274 15 C -0.148 4.148 16 C 0.104 3.896 17 N -0.611 5.611 18 C 0.523 3.477 19 O -0.581 6.581 20 C -0.089 4.089 21 C -0.070 4.070 22 C -0.112 4.112 23 C -0.114 4.114 24 C -0.075 4.075 25 C -0.115 4.115 26 C -0.124 4.124 27 C -0.122 4.122 28 C -0.124 4.124 29 C -0.072 4.072 30 C -0.111 4.111 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.370 0.630 35 H 0.250 0.750 36 H 0.054 0.946 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.124 0.876 41 H 0.134 0.866 42 H 0.137 0.863 43 H 0.149 0.851 44 H 0.147 0.853 45 H 0.148 0.852 46 H 0.144 0.856 47 H 0.135 0.865 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.769 -9.901 27.312 29.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.029 3.971 3 H 0.057 0.943 4 C 0.060 3.940 5 H 0.087 0.913 6 N -0.370 5.370 7 C -0.367 4.367 8 H 0.102 0.898 9 C -0.270 4.270 10 N -0.623 5.623 11 Si 0.804 3.196 12 H -0.203 1.203 13 H -0.228 1.228 14 H -0.200 1.200 15 C -0.189 4.189 16 C -0.017 4.017 17 N -0.345 5.345 18 C 0.314 3.686 19 O -0.460 6.460 20 C -0.128 4.128 21 C -0.071 4.071 22 C -0.130 4.130 23 C -0.131 4.131 24 C -0.075 4.075 25 C -0.133 4.133 26 C -0.142 4.142 27 C -0.140 4.140 28 C -0.142 4.142 29 C -0.072 4.072 30 C -0.129 4.129 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.201 0.799 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.115 0.885 40 H 0.142 0.858 41 H 0.152 0.848 42 H 0.155 0.845 43 H 0.166 0.834 44 H 0.165 0.835 45 H 0.166 0.834 46 H 0.162 0.838 47 H 0.153 0.847 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.137 -9.482 27.357 29.033 hybrid contribution 0.262 0.854 -1.413 1.672 sum -1.875 -8.628 25.944 27.405 Atomic orbital electron populations 1.21914 0.94410 1.02393 1.01369 1.21552 0.94686 0.95301 0.85589 0.94270 1.21439 0.95066 0.91082 0.86432 0.91315 1.42523 1.81169 1.09540 1.03745 1.19581 1.36817 0.95493 0.84831 0.89815 1.25608 1.03242 0.95903 1.02295 1.69834 1.54589 1.04467 1.33389 0.85191 0.78097 0.76562 0.79774 1.20349 1.22776 1.20029 1.23373 0.98807 1.01163 0.95562 1.22570 0.96076 0.87847 0.95242 1.48662 1.52525 1.28971 1.04305 1.20871 0.79936 0.85194 0.82616 1.90699 1.42061 1.29528 1.83761 1.20745 1.03966 1.00276 0.87860 1.19224 0.95330 0.97387 0.95127 1.20961 0.95825 1.00620 0.95577 1.21276 0.99853 0.96209 0.95804 1.18442 0.94840 0.98054 0.96154 1.21340 1.00728 0.97168 0.94078 1.21219 0.94557 0.97354 1.01054 1.21198 0.97369 1.00119 0.95323 1.21289 0.99921 0.96593 0.96360 1.18349 0.95460 0.98004 0.95417 1.21049 1.00585 0.96429 0.94811 0.93130 0.92689 0.91055 0.79864 0.94154 0.92749 0.89249 0.87819 0.88536 0.85799 0.84814 0.84492 0.83352 0.83517 0.83439 0.83779 0.84700 0.85355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.83 9.11 71.98 0.66 -4.17 16 2 C 0.13 4.74 3.21 45.34 0.15 4.89 16 3 H 0.04 1.68 7.70 -2.39 -0.02 1.66 16 4 C 0.17 6.30 3.11 46.18 0.14 6.44 16 5 H 0.07 2.50 7.82 -2.39 -0.02 2.48 16 6 N -0.73 -35.95 5.25 -317.33 -1.67 -37.61 16 7 C -0.24 -12.57 9.98 84.03 0.84 -11.73 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 9 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 10 N -0.97 -59.56 13.06 21.65 0.28 -59.28 16 11 Si 0.97 45.26 29.55 68.60 2.03 47.29 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 13 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 14 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 15 C -0.15 -4.40 6.77 31.98 0.22 -4.18 16 16 C 0.10 2.18 6.69 86.86 0.58 2.76 16 17 N -0.61 -17.24 3.06 -788.06 -2.41 -19.65 16 18 C 0.52 14.98 7.63 87.65 0.67 15.65 16 19 O -0.58 -22.13 15.08 -3.02 -0.05 -22.17 16 20 C -0.09 -1.66 4.80 29.10 0.14 -1.52 16 21 C -0.07 -1.57 4.34 -20.09 -0.09 -1.66 16 22 C -0.11 -2.33 9.58 22.04 0.21 -2.12 16 23 C -0.11 -2.27 9.77 22.33 0.22 -2.05 16 24 C -0.07 -1.65 5.74 -21.30 -0.12 -1.78 16 25 C -0.12 -2.00 9.77 22.33 0.22 -1.78 16 26 C -0.12 -1.90 9.95 22.05 0.22 -1.69 16 27 C -0.12 -2.02 9.95 22.05 0.22 -1.80 16 28 C -0.12 -2.50 9.77 22.33 0.22 -2.28 16 29 C -0.07 -1.72 5.74 -21.30 -0.12 -1.84 16 30 C -0.11 -2.63 9.37 22.33 0.21 -2.42 16 31 H 0.05 1.81 6.89 -2.39 -0.02 1.80 16 32 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.37 20.28 7.53 -92.71 -0.70 19.59 16 35 H 0.25 14.95 8.31 -92.70 -0.77 14.18 16 36 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 37 H 0.09 2.42 8.14 -2.39 -0.02 2.41 16 38 H 0.10 1.53 7.48 -2.38 -0.02 1.52 16 39 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.12 1.76 7.77 -2.39 -0.02 1.74 16 41 H 0.13 1.63 8.08 -2.39 -0.02 1.61 16 42 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 43 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 44 H 0.15 1.74 8.06 -2.92 -0.02 1.72 16 45 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 46 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 47 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 48 H 0.13 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -74.44 394.64 3.48 -70.96 By element: Atomic # 1 Polarization: 35.45 SS G_CDS: 0.26 Total: 35.71 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: 5.04 Total: -15.24 kcal Atomic # 7 Polarization: -112.75 SS G_CDS: -3.80 Total: -116.55 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.05 Total: -22.17 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -74.44 3.48 -70.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987490184.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.610 kcal (2) G-P(sol) polarization free energy of solvation -74.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds