Wall clock time and date at job start Tue Mar 31 2020 22:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.87412 * 2 1 4 4 C 1.54328 * 109.88112 * 238.82372 * 2 1 3 5 5 C 1.55154 * 102.94257 * 262.77738 * 4 2 1 6 6 H 1.08995 * 111.00845 * 82.57167 * 5 4 2 7 7 N 1.46505 * 111.00265 * 206.38471 * 5 4 2 8 8 C 1.36933 * 119.99999 * 204.99485 * 7 5 4 9 9 H 1.08001 * 120.00284 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99791 * 179.97438 * 8 7 5 11 11 N 1.31610 * 120.00151 * 0.02562 * 10 8 7 12 12 Si 1.86808 * 119.99699 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46649 * 90.00329 * 12 10 8 14 14 H 1.48500 * 109.47188 * 210.00046 * 12 10 8 15 15 H 1.48499 * 109.47187 * 330.00538 * 12 10 8 16 16 C 1.55131 * 101.48730 * 324.32928 * 5 4 2 17 17 N 1.47018 * 109.88659 * 121.01676 * 2 1 3 18 18 C 1.34778 * 125.65094 * 300.44186 * 17 2 1 19 19 O 1.21288 * 119.99311 * 359.97438 * 18 17 2 20 20 C 1.50691 * 120.00538 * 179.97438 * 18 17 2 21 21 C 1.50702 * 109.47327 * 180.02562 * 20 18 17 22 22 C 1.36133 * 120.17035 * 265.02233 * 21 20 18 23 23 C 1.39325 * 120.99038 * 179.97438 * 22 21 20 24 24 C 1.36128 * 120.98733 * 359.97438 * 23 22 21 25 25 C 1.40495 * 119.65589 * 0.02562 * 24 23 22 26 26 C 1.40549 * 121.29141 * 180.02562 * 25 24 23 27 27 C 1.36083 * 119.65707 * 179.97438 * 26 25 24 28 28 C 1.39383 * 120.99212 * 359.97438 * 27 26 25 29 29 C 1.36090 * 120.99679 * 0.02562 * 28 27 26 30 30 C 1.40494 * 120.17676 * 85.00083 * 21 20 18 31 31 H 1.09006 * 109.47020 * 300.43495 * 1 2 3 32 32 H 1.08997 * 109.47345 * 60.43573 * 1 2 3 33 33 H 1.08998 * 109.47201 * 180.44091 * 1 2 3 34 34 H 1.09001 * 110.72229 * 21.13827 * 4 2 1 35 35 H 1.08999 * 110.72186 * 144.41207 * 4 2 1 36 36 H 0.97003 * 119.99844 * 25.00393 * 7 5 4 37 37 H 0.97003 * 119.99789 * 179.97438 * 11 10 8 38 38 H 1.08995 * 110.49932 * 278.46111 * 16 5 4 39 39 H 1.08999 * 110.34562 * 156.05946 * 16 5 4 40 40 H 1.09005 * 109.47234 * 60.00013 * 20 18 17 41 41 H 1.09002 * 109.47390 * 300.00291 * 20 18 17 42 42 H 1.08006 * 119.50303 * 359.95758 * 22 21 20 43 43 H 1.08006 * 119.50728 * 179.97438 * 23 22 21 44 44 H 1.08000 * 120.17452 * 179.97438 * 24 23 22 45 45 H 1.08000 * 120.16997 * 359.96041 * 26 25 24 46 46 H 1.07998 * 119.50485 * 180.02562 * 27 26 25 47 47 H 1.08006 * 119.50282 * 180.02562 * 28 27 26 48 48 H 1.07998 * 120.17284 * 180.26868 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7513 -1.2417 5 6 2.3517 -2.1705 -0.6894 6 1 1.4451 -2.7746 -0.6565 7 7 3.3929 -2.8337 -1.4784 8 6 3.4557 -4.2010 -1.5174 9 1 2.7375 -4.7906 -0.9670 10 6 4.4420 -4.8294 -2.2654 11 7 5.3169 -4.1110 -2.9366 12 14 4.5272 -6.6948 -2.3193 13 1 3.7011 -7.1956 -3.4471 14 1 5.9368 -7.1206 -2.5110 15 1 4.0113 -7.2509 -1.0427 16 6 2.8613 -1.8456 0.7394 17 7 2.0301 -0.7124 1.1848 18 6 1.7755 -0.3811 2.4662 19 8 1.0793 0.5798 2.7172 20 6 2.3557 -1.2045 3.5870 21 6 1.9228 -0.6277 4.9103 22 6 2.7290 0.2473 5.5718 23 6 2.3455 0.7912 6.7959 24 6 1.1534 0.4639 7.3656 25 6 0.2946 -0.4361 6.7125 26 6 -0.9443 -0.7976 7.2692 27 6 -1.7503 -1.6719 6.6077 28 6 -1.3668 -2.2161 5.3831 29 6 -0.1747 -1.8893 4.8136 30 6 0.6850 -0.9899 5.4675 31 1 -0.3633 0.5206 0.8861 32 1 -0.3634 0.5070 -0.8938 33 1 -0.3633 -1.0276 0.0079 34 1 1.2917 -0.7919 -2.0190 35 1 2.9656 -0.2855 -1.6179 36 1 4.0379 -2.3042 -1.9729 37 1 6.0063 -4.5502 -3.4589 38 1 3.9123 -1.5579 0.7136 39 1 2.7178 -2.7029 1.3970 40 1 3.4438 -1.1903 3.5226 41 1 2.0003 -2.2316 3.5050 42 1 3.6802 0.5238 5.1415 43 1 3.0040 1.4830 7.3003 44 1 0.8695 0.8930 8.3151 45 1 -1.2548 -0.3838 8.2173 46 1 -2.7019 -1.9477 7.0375 47 1 -2.0255 -2.9075 4.8786 48 1 0.1072 -2.3156 3.8622 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989707192.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:27 Heat of formation + Delta-G solvation = 19.526002 kcal Electronic energy + Delta-G solvation = -28840.978411 eV Core-core repulsion = 25053.483262 eV Total energy + Delta-G solvation = -3787.495149 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.76485 -39.74179 -37.50683 -36.52867 -34.23281 -33.84696 -31.84442 -31.34082 -30.38228 -30.07583 -28.38849 -27.44412 -25.45686 -23.95387 -23.44817 -23.06059 -22.25512 -20.88971 -20.03155 -18.67269 -17.63102 -17.42209 -17.06639 -16.85908 -16.32478 -15.56294 -15.33487 -14.86814 -14.43706 -14.34194 -14.12313 -13.70282 -13.56835 -13.48612 -13.28106 -13.20609 -12.96268 -12.93234 -12.73586 -12.46245 -12.12569 -12.01313 -11.81752 -11.67559 -11.39204 -11.22262 -11.02480 -11.00387 -10.87370 -10.75754 -10.67102 -10.29310 -10.04667 -9.99623 -9.81584 -9.55203 -9.06200 -8.66765 -8.35926 -7.91955 -7.14396 -5.90120 -3.21207 0.44234 0.96189 1.95773 2.82724 2.89080 3.25411 3.36145 3.42044 3.43279 4.05161 4.39798 4.47201 4.66032 4.72254 4.74646 4.80861 4.92073 5.03985 5.10025 5.11439 5.19674 5.27135 5.28941 5.32432 5.41790 5.45622 5.46734 5.56990 5.60339 5.69327 5.83243 5.83483 5.88094 6.02271 6.07573 6.09537 6.14036 6.16125 6.19633 6.27137 6.35091 6.42419 6.44776 6.51079 6.57055 6.64037 6.74968 6.81117 6.93515 7.58242 7.80626 8.27076 8.39028 9.39375 9.92832 10.27630 11.31770 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.013714 B = 0.002708 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.247485 B =10337.030301 C =10819.894620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.140 3.860 3 H 0.068 0.932 4 C -0.138 4.138 5 C 0.175 3.825 6 H 0.068 0.932 7 N -0.712 5.712 8 C -0.250 4.250 9 H 0.073 0.927 10 C -0.008 4.008 11 N -0.929 5.929 12 Si 0.908 3.092 13 H -0.289 1.289 14 H -0.291 1.291 15 H -0.281 1.281 16 C 0.070 3.930 17 N -0.610 5.610 18 C 0.529 3.471 19 O -0.540 6.540 20 C -0.104 4.104 21 C -0.043 4.043 22 C -0.108 4.108 23 C -0.111 4.111 24 C -0.112 4.112 25 C -0.051 4.051 26 C -0.110 4.110 27 C -0.118 4.118 28 C -0.120 4.120 29 C -0.098 4.098 30 C -0.034 4.034 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.387 0.613 37 H 0.257 0.743 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.124 0.876 46 H 0.120 0.880 47 H 0.122 0.878 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.664 8.207 18.020 22.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.086 0.914 4 C -0.177 4.177 5 C 0.062 3.938 6 H 0.086 0.914 7 N -0.351 5.351 8 C -0.381 4.381 9 H 0.090 0.910 10 C -0.204 4.204 11 N -0.576 5.576 12 Si 0.738 3.262 13 H -0.216 1.216 14 H -0.217 1.217 15 H -0.206 1.206 16 C -0.056 4.056 17 N -0.344 5.344 18 C 0.317 3.683 19 O -0.418 6.418 20 C -0.144 4.144 21 C -0.043 4.043 22 C -0.126 4.126 23 C -0.129 4.129 24 C -0.130 4.130 25 C -0.051 4.051 26 C -0.128 4.128 27 C -0.136 4.136 28 C -0.138 4.138 29 C -0.116 4.116 30 C -0.034 4.034 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.222 0.778 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.142 0.858 46 H 0.138 0.862 47 H 0.140 0.860 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.041 8.526 18.204 22.470 hybrid contribution 0.467 -0.896 -0.288 1.051 sum -9.574 7.630 17.916 21.699 Atomic orbital electron populations 1.22127 0.95118 1.02211 1.02397 1.21474 0.94328 0.95874 0.84717 0.91384 1.23032 1.01685 0.97161 0.95856 1.21310 0.92763 0.91249 0.88471 0.91423 1.42332 1.33396 1.04045 1.55358 1.19245 1.11286 0.82483 1.25067 0.90952 1.24772 0.97926 0.98016 0.99717 1.69654 1.18945 1.34239 1.34776 0.86191 0.76923 0.85264 0.77785 1.21579 1.21688 1.20613 1.23574 0.94926 0.87127 0.99946 1.48645 1.50273 1.31057 1.04474 1.20022 0.80912 0.85054 0.82270 1.90686 1.38885 1.28833 1.83396 1.20698 1.02892 1.00433 0.90348 1.19152 0.93569 0.97164 0.94461 1.20697 1.00005 0.96624 0.95292 1.20781 0.96746 0.99741 0.95604 1.20965 0.94378 0.97885 0.99817 1.18040 0.95069 0.97600 0.94362 1.20978 0.93555 0.98358 0.99864 1.20826 0.99712 0.97569 0.95453 1.20841 0.96752 1.00289 0.95870 1.21064 0.94276 0.96961 0.99337 1.17857 0.94220 0.97207 0.94152 0.91501 0.92049 0.92513 0.90190 0.90628 0.77846 0.93288 0.91182 0.91305 0.87717 0.87811 0.86028 0.85992 0.85779 0.85779 0.86152 0.86037 0.85824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.06 37.16 0.34 -1.88 16 2 C 0.14 2.05 3.49 -66.95 -0.23 1.82 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.14 -2.12 6.14 -24.90 -0.15 -2.27 16 5 C 0.17 3.14 3.73 -65.66 -0.24 2.89 16 6 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 7 N -0.71 -16.30 5.24 -51.24 -0.27 -16.57 16 8 C -0.25 -6.43 9.96 -15.06 -0.15 -6.58 16 9 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 10 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 11 N -0.93 -26.62 13.06 55.49 0.72 -25.90 16 12 Si 0.91 21.27 29.55 -169.99 -5.02 16.25 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 16 C 0.07 1.12 6.40 -2.41 -0.02 1.11 16 17 N -0.61 -9.24 3.08 -162.88 -0.50 -9.74 16 18 C 0.53 8.13 7.62 -10.99 -0.08 8.04 16 19 O -0.54 -9.85 14.93 5.55 0.08 -9.76 16 20 C -0.10 -1.31 4.23 -29.04 -0.12 -1.44 16 21 C -0.04 -0.57 4.38 -104.53 -0.46 -1.02 16 22 C -0.11 -1.29 9.57 -39.93 -0.38 -1.67 16 23 C -0.11 -1.17 9.95 -39.94 -0.40 -1.57 16 24 C -0.11 -1.20 9.77 -39.49 -0.39 -1.58 16 25 C -0.05 -0.62 5.74 -106.83 -0.61 -1.24 16 26 C -0.11 -1.14 9.77 -39.48 -0.39 -1.52 16 27 C -0.12 -1.17 9.95 -39.93 -0.40 -1.57 16 28 C -0.12 -1.31 9.95 -39.93 -0.40 -1.71 16 29 C -0.10 -1.24 9.28 -39.48 -0.37 -1.61 16 30 C -0.03 -0.46 5.74 -106.83 -0.61 -1.08 16 31 H 0.07 1.03 6.75 -51.93 -0.35 0.68 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.16 7.83 -51.93 -0.41 0.75 16 35 H 0.08 1.18 8.00 -51.93 -0.42 0.76 16 36 H 0.39 9.49 7.76 -40.82 -0.32 9.17 16 37 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.07 1.05 7.48 -51.93 -0.39 0.66 16 40 H 0.10 1.16 8.04 -51.93 -0.42 0.75 16 41 H 0.10 1.19 6.42 -51.93 -0.33 0.86 16 42 H 0.12 1.26 8.05 -52.48 -0.42 0.83 16 43 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 44 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 45 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 46 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 47 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 48 H 0.12 1.50 6.49 -52.49 -0.34 1.16 16 LS Contribution 391.31 15.07 5.90 5.90 Total: -1.00 -31.02 391.31 -11.41 -42.43 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -7.16 Total: 10.57 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -5.16 Total: -13.18 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: -0.05 Total: -52.20 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.08 Total: -9.76 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.02 -11.41 -42.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989707192.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.956 kcal (2) G-P(sol) polarization free energy of solvation -31.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds