Wall clock time and date at job start Tue Mar 31 2020 22:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.87412 * 2 1 4 4 C 1.54328 * 109.88112 * 238.82372 * 2 1 3 5 5 C 1.55154 * 102.94257 * 262.77738 * 4 2 1 6 6 H 1.08995 * 111.00845 * 82.57167 * 5 4 2 7 7 N 1.46505 * 111.00265 * 206.38471 * 5 4 2 8 8 C 1.36933 * 119.99999 * 204.99485 * 7 5 4 9 9 H 1.08001 * 120.00284 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99791 * 179.97438 * 8 7 5 11 11 N 1.31610 * 120.00151 * 0.02562 * 10 8 7 12 12 Si 1.86808 * 119.99699 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46649 * 90.00329 * 12 10 8 14 14 H 1.48500 * 109.47188 * 210.00046 * 12 10 8 15 15 H 1.48499 * 109.47187 * 330.00538 * 12 10 8 16 16 C 1.55131 * 101.48730 * 324.32928 * 5 4 2 17 17 N 1.47018 * 109.88659 * 121.01676 * 2 1 3 18 18 C 1.34778 * 125.65094 * 300.44186 * 17 2 1 19 19 O 1.21288 * 119.99311 * 359.97438 * 18 17 2 20 20 C 1.50691 * 120.00538 * 179.97438 * 18 17 2 21 21 C 1.50702 * 109.47327 * 180.02562 * 20 18 17 22 22 C 1.36133 * 120.17035 * 265.02233 * 21 20 18 23 23 C 1.39325 * 120.99038 * 179.97438 * 22 21 20 24 24 C 1.36128 * 120.98733 * 359.97438 * 23 22 21 25 25 C 1.40495 * 119.65589 * 0.02562 * 24 23 22 26 26 C 1.40549 * 121.29141 * 180.02562 * 25 24 23 27 27 C 1.36083 * 119.65707 * 179.97438 * 26 25 24 28 28 C 1.39383 * 120.99212 * 359.97438 * 27 26 25 29 29 C 1.36090 * 120.99679 * 0.02562 * 28 27 26 30 30 C 1.40494 * 120.17676 * 85.00083 * 21 20 18 31 31 H 1.09006 * 109.47020 * 300.43495 * 1 2 3 32 32 H 1.08997 * 109.47345 * 60.43573 * 1 2 3 33 33 H 1.08998 * 109.47201 * 180.44091 * 1 2 3 34 34 H 1.09001 * 110.72229 * 21.13827 * 4 2 1 35 35 H 1.08999 * 110.72186 * 144.41207 * 4 2 1 36 36 H 0.97003 * 119.99844 * 25.00393 * 7 5 4 37 37 H 0.97003 * 119.99789 * 179.97438 * 11 10 8 38 38 H 1.08995 * 110.49932 * 278.46111 * 16 5 4 39 39 H 1.08999 * 110.34562 * 156.05946 * 16 5 4 40 40 H 1.09005 * 109.47234 * 60.00013 * 20 18 17 41 41 H 1.09002 * 109.47390 * 300.00291 * 20 18 17 42 42 H 1.08006 * 119.50303 * 359.95758 * 22 21 20 43 43 H 1.08006 * 119.50728 * 179.97438 * 23 22 21 44 44 H 1.08000 * 120.17452 * 179.97438 * 24 23 22 45 45 H 1.08000 * 120.16997 * 359.96041 * 26 25 24 46 46 H 1.07998 * 119.50485 * 180.02562 * 27 26 25 47 47 H 1.08006 * 119.50282 * 180.02562 * 28 27 26 48 48 H 1.07998 * 120.17284 * 180.26868 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7513 -1.2417 5 6 2.3517 -2.1705 -0.6894 6 1 1.4451 -2.7746 -0.6565 7 7 3.3929 -2.8337 -1.4784 8 6 3.4557 -4.2010 -1.5174 9 1 2.7375 -4.7906 -0.9670 10 6 4.4420 -4.8294 -2.2654 11 7 5.3169 -4.1110 -2.9366 12 14 4.5272 -6.6948 -2.3193 13 1 3.7011 -7.1956 -3.4471 14 1 5.9368 -7.1206 -2.5110 15 1 4.0113 -7.2509 -1.0427 16 6 2.8613 -1.8456 0.7394 17 7 2.0301 -0.7124 1.1848 18 6 1.7755 -0.3811 2.4662 19 8 1.0793 0.5798 2.7172 20 6 2.3557 -1.2045 3.5870 21 6 1.9228 -0.6277 4.9103 22 6 2.7290 0.2473 5.5718 23 6 2.3455 0.7912 6.7959 24 6 1.1534 0.4639 7.3656 25 6 0.2946 -0.4361 6.7125 26 6 -0.9443 -0.7976 7.2692 27 6 -1.7503 -1.6719 6.6077 28 6 -1.3668 -2.2161 5.3831 29 6 -0.1747 -1.8893 4.8136 30 6 0.6850 -0.9899 5.4675 31 1 -0.3633 0.5206 0.8861 32 1 -0.3634 0.5070 -0.8938 33 1 -0.3633 -1.0276 0.0079 34 1 1.2917 -0.7919 -2.0190 35 1 2.9656 -0.2855 -1.6179 36 1 4.0379 -2.3042 -1.9729 37 1 6.0063 -4.5502 -3.4589 38 1 3.9123 -1.5579 0.7136 39 1 2.7178 -2.7029 1.3970 40 1 3.4438 -1.1903 3.5226 41 1 2.0003 -2.2316 3.5050 42 1 3.6802 0.5238 5.1415 43 1 3.0040 1.4830 7.3003 44 1 0.8695 0.8930 8.3151 45 1 -1.2548 -0.3838 8.2173 46 1 -2.7019 -1.9477 7.0375 47 1 -2.0255 -2.9075 4.8786 48 1 0.1072 -2.3156 3.8622 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989707192.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:26 Heat of formation + Delta-G solvation = 4.275670 kcal Electronic energy + Delta-G solvation = -28841.639715 eV Core-core repulsion = 25053.483262 eV Total energy + Delta-G solvation = -3788.156453 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.72672 -40.88302 -38.80200 -37.38292 -35.96644 -34.78696 -33.28330 -32.86346 -31.19900 -30.96270 -29.97781 -28.41954 -26.72361 -25.77719 -24.31845 -23.88371 -23.46946 -22.04538 -21.28363 -19.89617 -19.29414 -18.44424 -18.10775 -17.93864 -17.18132 -16.93354 -16.59337 -16.31056 -15.69817 -15.40530 -15.16629 -15.02881 -14.73205 -14.61227 -14.46427 -14.38130 -14.17517 -14.07552 -13.85533 -13.57934 -13.26859 -13.11228 -13.00631 -12.80610 -12.78645 -12.74043 -12.30387 -12.22418 -12.11370 -12.03867 -11.81400 -11.71744 -11.64907 -11.44899 -11.07887 -10.91549 -10.63666 -9.66898 -9.50662 -9.04256 -8.75673 -7.93892 -5.23631 -0.39259 0.11977 1.09464 1.51508 1.51879 1.60024 1.61167 1.95005 2.17098 2.57923 3.16579 3.37962 3.48153 3.52997 3.81030 3.86861 3.91190 3.96190 3.99887 4.02429 4.12185 4.12965 4.26551 4.33818 4.36089 4.44797 4.47566 4.48809 4.51729 4.60012 4.65285 4.71467 4.77148 4.88794 4.91782 5.02567 5.05720 5.14913 5.22342 5.24822 5.30907 5.34402 5.36419 5.46939 5.52518 5.56055 5.62884 5.72156 5.93881 6.13354 6.27134 6.54986 7.15986 7.35112 8.06382 8.30459 9.28948 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.013714 B = 0.002708 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.247485 B =10337.030301 C =10819.894620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.139 3.861 3 H 0.069 0.931 4 C -0.126 4.126 5 C 0.168 3.832 6 H 0.067 0.933 7 N -0.723 5.723 8 C -0.242 4.242 9 H 0.080 0.920 10 C -0.069 4.069 11 N -0.967 5.967 12 Si 0.968 3.032 13 H -0.290 1.290 14 H -0.299 1.299 15 H -0.267 1.267 16 C 0.084 3.916 17 N -0.609 5.609 18 C 0.531 3.469 19 O -0.569 6.569 20 C -0.098 4.098 21 C -0.068 4.068 22 C -0.117 4.117 23 C -0.121 4.121 24 C -0.112 4.112 25 C -0.075 4.075 26 C -0.110 4.110 27 C -0.124 4.124 28 C -0.122 4.122 29 C -0.125 4.125 30 C -0.057 4.057 31 H 0.049 0.951 32 H 0.081 0.919 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.377 0.623 37 H 0.251 0.749 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.118 0.882 41 H 0.111 0.889 42 H 0.131 0.869 43 H 0.149 0.851 44 H 0.153 0.847 45 H 0.153 0.847 46 H 0.149 0.851 47 H 0.138 0.862 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.993 8.291 19.927 24.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.035 3.965 3 H 0.087 0.913 4 C -0.165 4.165 5 C 0.058 3.942 6 H 0.085 0.915 7 N -0.361 5.361 8 C -0.373 4.373 9 H 0.098 0.902 10 C -0.262 4.262 11 N -0.617 5.617 12 Si 0.797 3.203 13 H -0.217 1.217 14 H -0.226 1.226 15 H -0.192 1.192 16 C -0.041 4.041 17 N -0.343 5.343 18 C 0.320 3.680 19 O -0.449 6.449 20 C -0.137 4.137 21 C -0.069 4.069 22 C -0.135 4.135 23 C -0.139 4.139 24 C -0.129 4.129 25 C -0.075 4.075 26 C -0.128 4.128 27 C -0.142 4.142 28 C -0.140 4.140 29 C -0.143 4.143 30 C -0.057 4.057 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.091 0.909 36 H 0.209 0.791 37 H 0.060 0.940 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.136 0.864 41 H 0.129 0.871 42 H 0.149 0.851 43 H 0.166 0.834 44 H 0.171 0.829 45 H 0.171 0.829 46 H 0.167 0.833 47 H 0.156 0.844 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.411 8.617 20.146 24.705 hybrid contribution 0.777 -0.838 -0.802 1.396 sum -10.634 7.779 19.344 23.405 Atomic orbital electron populations 1.22044 0.94182 1.02128 1.02594 1.21517 0.95018 0.95733 0.84205 0.91312 1.22925 1.01976 0.95246 0.96346 1.21455 0.91407 0.92299 0.89051 0.91538 1.42443 1.34266 1.03330 1.56108 1.19621 1.10361 0.83906 1.23445 0.90194 1.25497 0.98359 1.01841 1.00487 1.69798 1.19932 1.35558 1.36376 0.85231 0.76186 0.80832 0.78043 1.21693 1.22574 1.19212 1.23236 0.94445 0.87731 0.98728 1.48651 1.50099 1.30730 1.04798 1.20458 0.80217 0.84754 0.82540 1.90667 1.40213 1.30257 1.83730 1.20683 1.03415 1.00215 0.89409 1.19272 0.94262 0.98464 0.94865 1.20993 1.00313 0.96255 0.95954 1.21117 0.97378 1.00097 0.95278 1.21351 0.93946 0.96997 1.00647 1.18431 0.96360 0.98330 0.94410 1.21360 0.92724 0.97938 1.00792 1.21188 1.00840 0.97176 0.94998 1.21162 0.96314 1.00135 0.96364 1.21150 0.95384 0.98097 0.99711 1.18130 0.94614 0.97872 0.95099 0.93160 0.89978 0.92650 0.89023 0.90888 0.79051 0.94022 0.91913 0.90436 0.86415 0.87067 0.85071 0.83370 0.82887 0.82939 0.83296 0.84386 0.86441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 9.06 71.98 0.65 -3.36 16 2 C 0.14 3.95 3.49 45.34 0.16 4.11 16 3 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 4 C -0.13 -3.75 6.14 31.78 0.20 -3.55 16 5 C 0.17 5.94 3.73 46.46 0.17 6.11 16 6 H 0.07 2.38 8.09 -2.39 -0.02 2.36 16 7 N -0.72 -33.02 5.24 -316.01 -1.66 -34.67 16 8 C -0.24 -12.34 9.96 84.03 0.84 -11.50 16 9 H 0.08 3.89 7.83 -2.91 -0.02 3.86 16 10 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 11 N -0.97 -56.25 13.06 21.65 0.28 -55.97 16 12 Si 0.97 43.79 29.55 68.60 2.03 45.82 16 13 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 14 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 15 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 16 C 0.08 2.65 6.40 86.93 0.56 3.20 16 17 N -0.61 -18.12 3.08 -787.62 -2.42 -20.54 16 18 C 0.53 16.23 7.62 87.65 0.67 16.90 16 19 O -0.57 -20.86 14.93 -3.05 -0.05 -20.91 16 20 C -0.10 -2.46 4.23 29.10 0.12 -2.34 16 21 C -0.07 -1.79 4.38 -19.80 -0.09 -1.88 16 22 C -0.12 -2.73 9.57 22.04 0.21 -2.52 16 23 C -0.12 -2.37 9.95 22.04 0.22 -2.16 16 24 C -0.11 -2.17 9.77 22.33 0.22 -1.95 16 25 C -0.08 -1.76 5.74 -21.30 -0.12 -1.88 16 26 C -0.11 -2.06 9.77 22.33 0.22 -1.84 16 27 C -0.12 -2.23 9.95 22.04 0.22 -2.01 16 28 C -0.12 -2.56 9.95 22.05 0.22 -2.34 16 29 C -0.13 -3.18 9.28 22.34 0.21 -2.98 16 30 C -0.06 -1.53 5.74 -21.30 -0.12 -1.65 16 31 H 0.05 1.52 6.75 -2.38 -0.02 1.50 16 32 H 0.08 1.81 8.14 -2.39 -0.02 1.80 16 33 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.09 2.51 7.83 -2.39 -0.02 2.49 16 35 H 0.07 2.23 8.00 -2.39 -0.02 2.21 16 36 H 0.38 18.69 7.76 -92.71 -0.72 17.97 16 37 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 38 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.08 2.30 7.48 -2.39 -0.02 2.28 16 40 H 0.12 2.57 8.04 -2.38 -0.02 2.55 16 41 H 0.11 2.57 6.42 -2.39 -0.02 2.55 16 42 H 0.13 2.63 8.05 -2.91 -0.02 2.60 16 43 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 44 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 45 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 46 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 47 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16 48 H 0.12 2.94 6.49 -2.91 -0.02 2.92 16 Total: -1.00 -66.92 391.31 3.44 -63.48 By element: Atomic # 1 Polarization: 37.45 SS G_CDS: 0.24 Total: 37.69 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: 5.01 Total: -14.90 kcal Atomic # 7 Polarization: -107.38 SS G_CDS: -3.80 Total: -111.18 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.05 Total: -20.91 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -66.92 3.44 -63.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989707192.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.757 kcal (2) G-P(sol) polarization free energy of solvation -66.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds