Wall clock time and date at job start Tue Mar 31 2020 22:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.41173 * 2 1 4 4 C 1.55132 * 110.34328 * 122.44570 * 2 1 3 5 5 C 1.55159 * 101.48409 * 156.05730 * 4 2 1 6 6 H 1.08996 * 110.87216 * 82.77066 * 5 4 2 7 7 N 1.46503 * 110.71596 * 205.96854 * 5 4 2 8 8 C 1.36935 * 119.99688 * 199.97688 * 7 5 4 9 9 H 1.07998 * 119.99999 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99772 * 179.97438 * 8 7 5 11 11 N 1.31618 * 120.00184 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 119.99878 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46668 * 60.00287 * 12 10 8 14 14 H 1.48502 * 109.47081 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47081 * 300.00605 * 12 10 8 16 16 C 1.54319 * 102.94249 * 324.32802 * 5 4 2 17 17 N 1.47031 * 107.27186 * 22.19876 * 16 5 4 18 18 C 1.34776 * 125.64695 * 181.01902 * 17 16 5 19 19 O 1.21278 * 119.99751 * 180.02562 * 18 17 16 20 20 C 1.50699 * 120.00169 * 0.02562 * 18 17 16 21 21 C 1.50697 * 109.47077 * 180.02562 * 20 18 17 22 22 C 1.36140 * 120.16944 * 265.82141 * 21 20 18 23 23 C 1.39342 * 120.98597 * 180.02562 * 22 21 20 24 24 C 1.36118 * 120.98736 * 359.40817 * 23 22 21 25 25 C 1.40502 * 119.65813 * 359.97438 * 24 23 22 26 26 C 1.40546 * 121.29143 * 179.97438 * 25 24 23 27 27 C 1.36095 * 119.65287 * 179.72204 * 26 25 24 28 28 C 1.39372 * 120.99252 * 0.27854 * 27 26 25 29 29 C 1.36090 * 120.99622 * 0.02742 * 28 27 26 30 30 C 1.40498 * 120.17440 * 84.99462 * 21 20 18 31 31 H 1.08997 * 109.47310 * 180.84045 * 1 2 3 32 32 H 1.08999 * 109.47020 * 300.84109 * 1 2 3 33 33 H 1.08998 * 109.47246 * 60.83811 * 1 2 3 34 34 H 1.08997 * 111.19057 * 37.95396 * 4 2 1 35 35 H 1.09000 * 110.93460 * 274.05443 * 4 2 1 36 36 H 0.96997 * 119.99833 * 19.97675 * 7 5 4 37 37 H 0.96996 * 120.00024 * 179.97438 * 11 10 8 38 38 H 1.08996 * 109.88977 * 262.77893 * 16 5 4 39 39 H 1.09003 * 110.00780 * 141.67824 * 16 5 4 40 40 H 1.09001 * 109.47236 * 59.99880 * 20 18 17 41 41 H 1.08999 * 109.46885 * 299.99686 * 20 18 17 42 42 H 1.07994 * 119.50715 * 359.46137 * 22 21 20 43 43 H 1.07997 * 119.50344 * 179.42235 * 23 22 21 44 44 H 1.08003 * 120.17423 * 179.97438 * 24 23 22 45 45 H 1.08002 * 120.17505 * 0.02562 * 26 25 24 46 46 H 1.08003 * 119.49834 * 180.26251 * 27 26 25 47 47 H 1.08004 * 119.50598 * 179.97438 * 28 27 26 48 48 H 1.08004 * 120.17294 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0693 -0.7804 1.2275 5 6 3.4797 -1.1973 0.7332 6 1 4.1954 -0.3872 0.8728 7 7 3.9320 -2.4099 1.4198 8 6 5.2652 -2.7207 1.4534 9 1 5.9832 -2.0718 0.9741 10 6 5.6938 -3.8694 2.1044 11 7 4.8188 -4.6600 2.6889 12 14 7.5125 -4.2939 2.1497 13 1 8.2592 -3.2005 2.8221 14 1 7.7065 -5.5608 2.8997 15 1 8.0171 -4.4579 0.7627 16 6 3.2524 -1.4726 -0.7681 17 7 2.0430 -0.7384 -1.1683 18 6 1.4971 -0.7363 -2.4006 19 8 0.4938 -0.0907 -2.6182 20 6 2.1336 -1.5359 -3.5081 21 6 1.3352 -1.3641 -4.7745 22 6 0.3675 -2.2644 -5.1008 23 6 -0.3805 -2.1223 -6.2678 24 6 -0.1736 -1.0727 -7.1094 25 6 0.8077 -0.1161 -6.7995 26 6 1.0503 0.9808 -7.6441 27 6 2.0052 1.8907 -7.3086 28 6 2.7526 1.7491 -6.1408 29 6 2.5498 0.6967 -5.3021 30 6 1.5736 -0.2644 -5.6159 31 1 -0.3634 -1.0275 0.0151 32 1 -0.3633 0.5268 0.8823 33 1 -0.3633 0.5007 -0.8974 34 1 1.4550 -1.6555 1.4390 35 1 2.1372 -0.1327 2.1016 36 1 3.2871 -2.9925 1.8505 37 1 5.1183 -5.4628 3.1434 38 1 3.1088 -2.5406 -0.9318 39 1 4.1075 -1.1208 -1.3455 40 1 2.1528 -2.5898 -3.2304 41 1 3.1524 -1.1844 -3.6708 42 1 0.1831 -3.1063 -4.4501 43 1 -1.1358 -2.8559 -6.5080 44 1 -0.7607 -0.9756 -8.0107 45 1 0.4786 1.1037 -8.5521 46 1 2.1867 2.7349 -7.9573 47 1 3.5047 2.4853 -5.8981 48 1 3.1369 0.5999 -4.4008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989707193.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:31 Heat of formation + Delta-G solvation = 22.352702 kcal Electronic energy + Delta-G solvation = -28815.126377 eV Core-core repulsion = 25027.753803 eV Total energy + Delta-G solvation = -3787.372575 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.76004 -39.74077 -37.44741 -36.52127 -34.22527 -33.84640 -31.81407 -31.40291 -30.37512 -30.05976 -28.46077 -27.41136 -25.33269 -23.95855 -23.43756 -23.05459 -22.17177 -20.71328 -20.27453 -18.63538 -17.62094 -17.34152 -17.09110 -16.60104 -16.32040 -16.05744 -15.21038 -14.85749 -14.46479 -14.26404 -13.99145 -13.72801 -13.69457 -13.52843 -13.44831 -13.10235 -13.04207 -12.76622 -12.71385 -12.25600 -11.99925 -11.94981 -11.80430 -11.71254 -11.38402 -11.25676 -11.04548 -11.00263 -10.85287 -10.78274 -10.70109 -10.37135 -10.09244 -9.95138 -9.78852 -9.36389 -9.02596 -8.66137 -8.31438 -7.91210 -7.14372 -5.89057 -3.20371 0.44743 0.96732 1.96244 2.84331 2.90112 3.27327 3.36909 3.42140 3.42804 4.05698 4.40908 4.48053 4.67026 4.73651 4.75588 4.81029 4.92064 5.04749 5.08816 5.14249 5.21901 5.25079 5.29169 5.33364 5.43038 5.46721 5.49258 5.55825 5.65194 5.70832 5.82454 5.87215 5.88750 6.02640 6.09054 6.11284 6.13400 6.16676 6.20156 6.35261 6.40354 6.44824 6.46764 6.48774 6.58006 6.70428 6.75281 6.84395 6.94163 7.58390 7.82937 8.28198 8.41883 9.40264 9.93968 10.28789 11.32771 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.013885 B = 0.002682 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.063298 B =10439.322194 C =10965.368526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.137 3.863 3 H 0.071 0.929 4 C -0.136 4.136 5 C 0.172 3.828 6 H 0.065 0.935 7 N -0.713 5.713 8 C -0.251 4.251 9 H 0.072 0.928 10 C -0.007 4.007 11 N -0.929 5.929 12 Si 0.908 3.092 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.285 1.285 16 C 0.072 3.928 17 N -0.610 5.610 18 C 0.530 3.470 19 O -0.539 6.539 20 C -0.105 4.105 21 C -0.043 4.043 22 C -0.107 4.107 23 C -0.110 4.110 24 C -0.113 4.113 25 C -0.051 4.051 26 C -0.109 4.109 27 C -0.118 4.118 28 C -0.120 4.120 29 C -0.098 4.098 30 C -0.034 4.034 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.387 0.613 37 H 0.258 0.742 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.124 0.876 46 H 0.120 0.880 47 H 0.121 0.879 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.458 9.871 -17.717 21.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.034 3.966 3 H 0.089 0.911 4 C -0.175 4.175 5 C 0.060 3.940 6 H 0.083 0.917 7 N -0.353 5.353 8 C -0.381 4.381 9 H 0.090 0.910 10 C -0.204 4.204 11 N -0.577 5.577 12 Si 0.739 3.261 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.211 1.211 16 C -0.054 4.054 17 N -0.345 5.345 18 C 0.319 3.681 19 O -0.417 6.417 20 C -0.144 4.144 21 C -0.044 4.044 22 C -0.125 4.125 23 C -0.128 4.128 24 C -0.131 4.131 25 C -0.051 4.051 26 C -0.127 4.127 27 C -0.136 4.136 28 C -0.138 4.138 29 C -0.116 4.116 30 C -0.034 4.034 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.222 0.778 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.124 0.876 41 H 0.120 0.880 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.142 0.858 46 H 0.138 0.862 47 H 0.139 0.861 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.812 10.162 -17.870 22.366 hybrid contribution 0.932 -0.624 0.248 1.148 sum -7.880 9.538 -17.622 21.532 Atomic orbital electron populations 1.22154 0.94365 1.02445 1.03046 1.21887 0.94749 0.95212 0.84730 0.91083 1.23177 0.97678 1.00305 0.96311 1.21161 0.93149 0.91073 0.88595 0.91708 1.42378 1.05976 1.23815 1.63180 1.19198 0.83874 1.05395 1.29681 0.90995 1.24773 0.97764 0.97549 1.00337 1.69646 1.32731 1.15206 1.40069 0.86266 0.84782 0.77505 0.77593 1.21131 1.21636 1.21112 1.23339 0.85059 0.96709 1.00307 1.48656 1.28640 1.48436 1.08746 1.20004 0.84193 0.81851 0.82087 1.90637 1.25169 1.43997 1.81888 1.20700 1.00103 1.02449 0.91163 1.19157 0.96665 0.94277 0.94253 1.20717 0.95225 0.99479 0.97063 1.20791 0.99412 0.98126 0.94472 1.20963 0.97752 0.94483 0.99891 1.18041 0.96546 0.95842 0.94642 1.20982 0.98459 0.94161 0.99110 1.20819 0.96461 0.99190 0.97165 1.20825 0.99958 0.98234 0.94811 1.21049 0.97224 0.94155 0.99206 1.17857 0.96380 0.94922 0.94273 0.92859 0.92472 0.89824 0.90486 0.90234 0.77848 0.93247 0.90814 0.92347 0.87642 0.87955 0.85979 0.85976 0.85785 0.85784 0.86176 0.86096 0.85889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 8.71 37.16 0.32 -1.99 16 2 C 0.14 2.01 3.78 -66.30 -0.25 1.76 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 4 C -0.14 -2.10 6.12 -24.46 -0.15 -2.25 16 5 C 0.17 3.10 3.59 -66.10 -0.24 2.87 16 6 H 0.07 1.17 8.12 -51.93 -0.42 0.75 16 7 N -0.71 -16.44 5.18 -51.65 -0.27 -16.71 16 8 C -0.25 -6.46 9.98 -15.06 -0.15 -6.61 16 9 H 0.07 1.79 7.83 -52.49 -0.41 1.37 16 10 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 11 N -0.93 -26.76 13.06 55.49 0.72 -26.03 16 12 Si 0.91 21.31 29.55 -169.99 -5.02 16.29 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 C 0.07 1.17 6.24 -3.06 -0.02 1.15 16 17 N -0.61 -9.32 3.24 -162.91 -0.53 -9.85 16 18 C 0.53 8.19 7.63 -10.99 -0.08 8.10 16 19 O -0.54 -9.67 13.68 5.56 0.08 -9.59 16 20 C -0.10 -1.35 4.41 -29.04 -0.13 -1.48 16 21 C -0.04 -0.57 4.38 -104.53 -0.46 -1.03 16 22 C -0.11 -1.31 9.58 -39.93 -0.38 -1.69 16 23 C -0.11 -1.19 9.95 -39.93 -0.40 -1.59 16 24 C -0.11 -1.21 9.77 -39.49 -0.39 -1.60 16 25 C -0.05 -0.62 5.74 -106.83 -0.61 -1.24 16 26 C -0.11 -1.13 9.77 -39.48 -0.39 -1.51 16 27 C -0.12 -1.17 9.95 -39.93 -0.40 -1.56 16 28 C -0.12 -1.30 9.95 -39.93 -0.40 -1.69 16 29 C -0.10 -1.23 9.28 -39.48 -0.37 -1.59 16 30 C -0.03 -0.46 5.74 -106.83 -0.61 -1.07 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 1.33 5.89 -51.93 -0.31 1.03 16 34 H 0.08 1.26 7.93 -51.93 -0.41 0.84 16 35 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.39 9.61 7.71 -40.82 -0.31 9.29 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 38 H 0.07 1.30 8.03 -51.93 -0.42 0.88 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.11 1.25 8.05 -51.93 -0.42 0.83 16 41 H 0.10 1.18 6.71 -51.93 -0.35 0.83 16 42 H 0.12 1.33 8.05 -52.49 -0.42 0.91 16 43 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 44 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 45 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 46 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 47 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 48 H 0.12 1.45 6.49 -52.48 -0.34 1.11 16 LS Contribution 390.19 15.07 5.88 5.88 Total: -1.00 -30.86 390.19 -11.50 -42.36 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -7.17 Total: 11.00 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -5.19 Total: -13.34 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -0.07 Total: -52.59 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.08 Total: -9.59 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.86 -11.50 -42.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989707193.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.708 kcal (2) G-P(sol) polarization free energy of solvation -30.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds