Wall clock time and date at job start Tue Mar 31 2020 22:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.41173 * 2 1 4 4 C 1.55132 * 110.34328 * 122.44570 * 2 1 3 5 5 C 1.55159 * 101.48409 * 156.05730 * 4 2 1 6 6 H 1.08996 * 110.87216 * 82.77066 * 5 4 2 7 7 N 1.46503 * 110.71596 * 205.96854 * 5 4 2 8 8 C 1.36935 * 119.99688 * 199.97688 * 7 5 4 9 9 H 1.07998 * 119.99999 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99772 * 179.97438 * 8 7 5 11 11 N 1.31618 * 120.00184 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 119.99878 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46668 * 60.00287 * 12 10 8 14 14 H 1.48502 * 109.47081 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47081 * 300.00605 * 12 10 8 16 16 C 1.54319 * 102.94249 * 324.32802 * 5 4 2 17 17 N 1.47031 * 107.27186 * 22.19876 * 16 5 4 18 18 C 1.34776 * 125.64695 * 181.01902 * 17 16 5 19 19 O 1.21278 * 119.99751 * 180.02562 * 18 17 16 20 20 C 1.50699 * 120.00169 * 0.02562 * 18 17 16 21 21 C 1.50697 * 109.47077 * 180.02562 * 20 18 17 22 22 C 1.36140 * 120.16944 * 265.82141 * 21 20 18 23 23 C 1.39342 * 120.98597 * 180.02562 * 22 21 20 24 24 C 1.36118 * 120.98736 * 359.40817 * 23 22 21 25 25 C 1.40502 * 119.65813 * 359.97438 * 24 23 22 26 26 C 1.40546 * 121.29143 * 179.97438 * 25 24 23 27 27 C 1.36095 * 119.65287 * 179.72204 * 26 25 24 28 28 C 1.39372 * 120.99252 * 0.27854 * 27 26 25 29 29 C 1.36090 * 120.99622 * 0.02742 * 28 27 26 30 30 C 1.40498 * 120.17440 * 84.99462 * 21 20 18 31 31 H 1.08997 * 109.47310 * 180.84045 * 1 2 3 32 32 H 1.08999 * 109.47020 * 300.84109 * 1 2 3 33 33 H 1.08998 * 109.47246 * 60.83811 * 1 2 3 34 34 H 1.08997 * 111.19057 * 37.95396 * 4 2 1 35 35 H 1.09000 * 110.93460 * 274.05443 * 4 2 1 36 36 H 0.96997 * 119.99833 * 19.97675 * 7 5 4 37 37 H 0.96996 * 120.00024 * 179.97438 * 11 10 8 38 38 H 1.08996 * 109.88977 * 262.77893 * 16 5 4 39 39 H 1.09003 * 110.00780 * 141.67824 * 16 5 4 40 40 H 1.09001 * 109.47236 * 59.99880 * 20 18 17 41 41 H 1.08999 * 109.46885 * 299.99686 * 20 18 17 42 42 H 1.07994 * 119.50715 * 359.46137 * 22 21 20 43 43 H 1.07997 * 119.50344 * 179.42235 * 23 22 21 44 44 H 1.08003 * 120.17423 * 179.97438 * 24 23 22 45 45 H 1.08002 * 120.17505 * 0.02562 * 26 25 24 46 46 H 1.08003 * 119.49834 * 180.26251 * 27 26 25 47 47 H 1.08004 * 119.50598 * 179.97438 * 28 27 26 48 48 H 1.08004 * 120.17294 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0693 -0.7804 1.2275 5 6 3.4797 -1.1973 0.7332 6 1 4.1954 -0.3872 0.8728 7 7 3.9320 -2.4099 1.4198 8 6 5.2652 -2.7207 1.4534 9 1 5.9832 -2.0718 0.9741 10 6 5.6938 -3.8694 2.1044 11 7 4.8188 -4.6600 2.6889 12 14 7.5125 -4.2939 2.1497 13 1 8.2592 -3.2005 2.8221 14 1 7.7065 -5.5608 2.8997 15 1 8.0171 -4.4579 0.7627 16 6 3.2524 -1.4726 -0.7681 17 7 2.0430 -0.7384 -1.1683 18 6 1.4971 -0.7363 -2.4006 19 8 0.4938 -0.0907 -2.6182 20 6 2.1336 -1.5359 -3.5081 21 6 1.3352 -1.3641 -4.7745 22 6 0.3675 -2.2644 -5.1008 23 6 -0.3805 -2.1223 -6.2678 24 6 -0.1736 -1.0727 -7.1094 25 6 0.8077 -0.1161 -6.7995 26 6 1.0503 0.9808 -7.6441 27 6 2.0052 1.8907 -7.3086 28 6 2.7526 1.7491 -6.1408 29 6 2.5498 0.6967 -5.3021 30 6 1.5736 -0.2644 -5.6159 31 1 -0.3634 -1.0275 0.0151 32 1 -0.3633 0.5268 0.8823 33 1 -0.3633 0.5007 -0.8974 34 1 1.4550 -1.6555 1.4390 35 1 2.1372 -0.1327 2.1016 36 1 3.2871 -2.9925 1.8505 37 1 5.1183 -5.4628 3.1434 38 1 3.1088 -2.5406 -0.9318 39 1 4.1075 -1.1208 -1.3455 40 1 2.1528 -2.5898 -3.2304 41 1 3.1524 -1.1844 -3.6708 42 1 0.1831 -3.1063 -4.4501 43 1 -1.1358 -2.8559 -6.5080 44 1 -0.7607 -0.9756 -8.0107 45 1 0.4786 1.1037 -8.5521 46 1 2.1867 2.7349 -7.9573 47 1 3.5047 2.4853 -5.8981 48 1 3.1369 0.5999 -4.4008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989707193.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:30 Heat of formation + Delta-G solvation = 7.177461 kcal Electronic energy + Delta-G solvation = -28815.784425 eV Core-core repulsion = 25027.753803 eV Total energy + Delta-G solvation = -3788.030622 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.72992 -40.88014 -38.74888 -37.38425 -35.94395 -34.80553 -33.27817 -32.89445 -31.19799 -30.95254 -30.07067 -28.40375 -26.62029 -25.79651 -24.30222 -23.88348 -23.36264 -21.88655 -21.55390 -19.87818 -19.16694 -18.42636 -18.11863 -17.75177 -17.33941 -17.17793 -16.64195 -16.22082 -15.59241 -15.42249 -15.19751 -15.17810 -14.78739 -14.68079 -14.38522 -14.34296 -14.15680 -14.06120 -13.62724 -13.49285 -13.28568 -13.11279 -12.92728 -12.85450 -12.75862 -12.74044 -12.36760 -12.23054 -12.14828 -12.10582 -11.81564 -11.70948 -11.65489 -11.53869 -11.00265 -10.85507 -10.50833 -9.60684 -9.50624 -9.06108 -8.75559 -7.93427 -5.23509 -0.39230 0.11917 1.09627 1.51534 1.52893 1.58872 1.62223 1.96470 2.17685 2.58049 3.16752 3.38123 3.49894 3.53612 3.79963 3.84702 3.89605 3.92425 4.00464 4.02608 4.12775 4.19508 4.25508 4.32772 4.35222 4.44832 4.48876 4.50506 4.52493 4.59870 4.65341 4.74265 4.80031 4.85981 4.89580 5.05249 5.11981 5.15985 5.21875 5.25161 5.31722 5.33755 5.36235 5.52347 5.54766 5.56226 5.62985 5.72217 5.93770 6.13355 6.27207 6.56543 7.18501 7.35016 8.06726 8.30418 9.29336 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.013885 B = 0.002682 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.063298 B =10439.322194 C =10965.368526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.137 3.863 3 H 0.085 0.915 4 C -0.124 4.124 5 C 0.166 3.834 6 H 0.071 0.929 7 N -0.725 5.725 8 C -0.242 4.242 9 H 0.082 0.918 10 C -0.070 4.070 11 N -0.968 5.968 12 Si 0.969 3.031 13 H -0.278 1.278 14 H -0.300 1.300 15 H -0.277 1.277 16 C 0.086 3.914 17 N -0.610 5.610 18 C 0.531 3.469 19 O -0.564 6.564 20 C -0.098 4.098 21 C -0.067 4.067 22 C -0.119 4.119 23 C -0.121 4.121 24 C -0.111 4.111 25 C -0.075 4.075 26 C -0.111 4.111 27 C -0.124 4.124 28 C -0.121 4.121 29 C -0.125 4.125 30 C -0.057 4.057 31 H 0.041 0.959 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.375 0.625 37 H 0.251 0.749 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.127 0.873 43 H 0.147 0.853 44 H 0.154 0.846 45 H 0.153 0.847 46 H 0.150 0.850 47 H 0.140 0.860 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.380 11.476 -19.554 24.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.034 3.966 3 H 0.102 0.898 4 C -0.163 4.163 5 C 0.056 3.944 6 H 0.089 0.911 7 N -0.364 5.364 8 C -0.374 4.374 9 H 0.100 0.900 10 C -0.263 4.263 11 N -0.618 5.618 12 Si 0.798 3.202 13 H -0.204 1.204 14 H -0.227 1.227 15 H -0.203 1.203 16 C -0.040 4.040 17 N -0.345 5.345 18 C 0.320 3.680 19 O -0.443 6.443 20 C -0.138 4.138 21 C -0.067 4.067 22 C -0.137 4.137 23 C -0.139 4.139 24 C -0.129 4.129 25 C -0.075 4.075 26 C -0.128 4.128 27 C -0.142 4.142 28 C -0.139 4.139 29 C -0.143 4.143 30 C -0.057 4.057 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.114 0.886 36 H 0.208 0.792 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.145 0.855 43 H 0.165 0.835 44 H 0.171 0.829 45 H 0.170 0.830 46 H 0.168 0.832 47 H 0.158 0.842 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.731 11.816 -19.738 24.606 hybrid contribution 0.835 -1.005 0.739 1.501 sum -7.896 10.810 -18.999 23.242 Atomic orbital electron populations 1.22049 0.93937 1.01776 1.03309 1.21974 0.95056 0.95586 0.83975 0.89759 1.23081 0.95716 1.00240 0.97270 1.21351 0.94606 0.89292 0.89197 0.91140 1.42515 1.04978 1.25120 1.63797 1.19603 0.85227 1.04784 1.27766 0.90023 1.25518 1.01422 0.98123 1.01238 1.69800 1.34359 1.15725 1.41932 0.85287 0.80532 0.76739 0.77641 1.20413 1.22693 1.20269 1.22982 0.85938 0.95972 0.99106 1.48674 1.28344 1.48334 1.09102 1.20394 0.83762 0.81489 0.82324 1.90623 1.26305 1.45142 1.82266 1.20672 1.00447 1.02211 0.90441 1.19262 0.97663 0.95178 0.94611 1.20977 0.95255 0.99531 0.97909 1.21100 0.99832 0.98973 0.94004 1.21347 0.97211 0.93685 1.00647 1.18431 0.97096 0.97130 0.94844 1.21359 0.98540 0.93301 0.99631 1.21198 0.95882 0.99969 0.97107 1.21165 1.00116 0.97845 0.94748 1.21152 0.97985 0.95206 0.99960 1.18123 0.97179 0.95285 0.95087 0.94012 0.90216 0.91413 0.91552 0.88629 0.79230 0.94063 0.92383 0.91028 0.87087 0.86954 0.85497 0.83514 0.82862 0.82968 0.83235 0.84199 0.86289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.23 8.71 71.98 0.63 -3.61 16 2 C 0.14 3.85 3.78 45.55 0.17 4.02 16 3 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 4 C -0.12 -3.71 6.12 32.07 0.20 -3.52 16 5 C 0.17 5.83 3.59 46.18 0.17 5.99 16 6 H 0.07 2.43 8.12 -2.39 -0.02 2.41 16 7 N -0.72 -33.42 5.18 -317.33 -1.64 -35.06 16 8 C -0.24 -12.40 9.98 84.03 0.84 -11.56 16 9 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 10 C -0.07 -3.82 5.50 84.86 0.47 -3.36 16 11 N -0.97 -56.80 13.06 21.65 0.28 -56.51 16 12 Si 0.97 43.91 29.55 68.60 2.03 45.94 16 13 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 14 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 15 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 16 C 0.09 2.73 6.24 86.73 0.54 3.27 16 17 N -0.61 -18.34 3.24 -787.73 -2.55 -20.89 16 18 C 0.53 16.40 7.63 87.66 0.67 17.07 16 19 O -0.56 -20.39 13.68 -3.02 -0.04 -20.43 16 20 C -0.10 -2.57 4.41 29.10 0.13 -2.44 16 21 C -0.07 -1.80 4.38 -19.80 -0.09 -1.88 16 22 C -0.12 -2.91 9.58 22.05 0.21 -2.70 16 23 C -0.12 -2.49 9.95 22.04 0.22 -2.28 16 24 C -0.11 -2.21 9.77 22.33 0.22 -1.99 16 25 C -0.07 -1.76 5.74 -21.29 -0.12 -1.88 16 26 C -0.11 -2.04 9.77 22.33 0.22 -1.82 16 27 C -0.12 -2.16 9.95 22.04 0.22 -1.94 16 28 C -0.12 -2.44 9.95 22.04 0.22 -2.23 16 29 C -0.13 -3.10 9.28 22.33 0.21 -2.89 16 30 C -0.06 -1.52 5.74 -21.30 -0.12 -1.64 16 31 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.07 2.13 5.89 -2.39 -0.01 2.12 16 34 H 0.07 2.15 7.93 -2.39 -0.02 2.13 16 35 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.38 18.95 7.71 -92.71 -0.72 18.23 16 37 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 38 H 0.06 2.05 8.03 -2.39 -0.02 2.03 16 39 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.11 2.69 8.05 -2.39 -0.02 2.67 16 41 H 0.11 2.62 6.71 -2.39 -0.02 2.61 16 42 H 0.13 2.81 8.05 -2.91 -0.02 2.79 16 43 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 44 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 45 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 46 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 47 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 48 H 0.12 2.86 6.49 -2.91 -0.02 2.85 16 Total: -1.00 -66.83 390.19 3.31 -63.52 By element: Atomic # 1 Polarization: 38.55 SS G_CDS: 0.25 Total: 38.80 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: 4.99 Total: -15.36 kcal Atomic # 7 Polarization: -108.55 SS G_CDS: -3.91 Total: -112.47 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.04 Total: -20.43 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -66.83 3.31 -63.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989707193.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.700 kcal (2) G-P(sol) polarization free energy of solvation -66.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds