Wall clock time and date at job start Tue Mar 31 2020 22:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.87705 * 2 1 4 4 C 1.54327 * 109.88612 * 121.02523 * 2 1 3 5 5 C 1.55154 * 102.94290 * 97.22041 * 4 2 1 6 6 H 1.09002 * 111.00378 * 277.42832 * 5 4 2 7 7 N 1.46500 * 111.00420 * 153.61252 * 5 4 2 8 8 C 1.36934 * 119.99978 * 158.17667 * 7 5 4 9 9 H 1.07995 * 120.00129 * 0.02562 * 8 7 5 10 10 C 1.38818 * 119.99952 * 180.02562 * 8 7 5 11 11 N 1.31613 * 119.99801 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99883 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47074 * 90.00096 * 12 10 8 14 14 H 1.48504 * 109.46998 * 210.00024 * 12 10 8 15 15 H 1.48498 * 109.47045 * 329.99768 * 12 10 8 16 16 C 1.54915 * 101.58176 * 35.50368 * 5 4 2 17 17 N 1.47029 * 109.87916 * 238.82977 * 2 1 3 18 18 C 1.34773 * 125.64802 * 59.57365 * 17 2 1 19 19 O 1.21288 * 120.00122 * 359.97438 * 18 17 2 20 20 C 1.50701 * 120.00203 * 180.02562 * 18 17 2 21 21 C 1.50696 * 109.47254 * 179.97438 * 20 18 17 22 22 C 1.36131 * 120.17300 * 264.72494 * 21 20 18 23 23 C 1.39328 * 120.99594 * 179.77488 * 22 21 20 24 24 C 1.36122 * 120.98593 * 0.47443 * 23 22 21 25 25 C 1.40505 * 119.65374 * 359.77988 * 24 23 22 26 26 C 1.40542 * 121.28221 * 180.02562 * 25 24 23 27 27 C 1.36086 * 119.65387 * 179.97438 * 26 25 24 28 28 C 1.39382 * 120.98930 * 0.02760 * 27 26 25 29 29 C 1.36090 * 120.99493 * 359.95606 * 28 27 26 30 30 C 1.40500 * 120.17662 * 84.99663 * 21 20 18 31 31 H 1.09002 * 109.46599 * 298.97626 * 1 2 3 32 32 H 1.08996 * 109.47347 * 58.97410 * 1 2 3 33 33 H 1.08997 * 109.47232 * 178.98245 * 1 2 3 34 34 H 1.09004 * 110.71649 * 338.85624 * 4 2 1 35 35 H 1.08997 * 110.87056 * 215.65546 * 4 2 1 36 36 H 0.97001 * 120.00052 * 338.18451 * 7 5 4 37 37 H 0.97006 * 120.00093 * 179.97438 * 11 10 8 38 38 H 1.08995 * 110.36257 * 81.82999 * 16 5 4 39 39 H 1.08997 * 110.36405 * 204.14718 * 16 5 4 40 40 H 1.09000 * 109.46797 * 299.99397 * 20 18 17 41 41 H 1.08997 * 109.47378 * 59.99494 * 20 18 17 42 42 H 1.08011 * 119.49927 * 359.97438 * 22 21 20 43 43 H 1.08001 * 119.50805 * 180.23683 * 23 22 21 44 44 H 1.08001 * 120.17735 * 179.79966 * 24 23 22 45 45 H 1.08003 * 120.17434 * 359.96239 * 26 25 24 46 46 H 1.07995 * 119.50803 * 180.02562 * 27 26 25 47 47 H 1.08001 * 119.49992 * 179.97438 * 28 27 26 48 48 H 1.08005 * 120.16796 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0549 -0.7480 1.2436 5 6 2.3518 -2.1686 0.6951 6 1 1.4451 -2.7728 0.6639 7 7 3.3931 -2.8297 1.4856 8 6 3.4963 -4.1951 1.4766 9 1 2.8104 -4.7847 0.8864 10 6 4.4827 -4.8216 2.2261 11 7 5.3182 -4.1032 2.9457 12 14 4.6239 -6.6842 2.2132 13 1 5.5367 -7.1038 1.1196 14 1 5.1655 -7.1486 3.5156 15 1 3.2819 -7.2809 1.9942 16 6 2.8567 -1.8507 -0.7346 17 7 2.0299 -0.7157 -1.1831 18 6 1.7754 -0.3876 -2.4652 19 8 1.0787 0.5723 -2.7188 20 6 2.3555 -1.2140 -3.5839 21 6 1.9228 -0.6406 -4.9087 22 6 0.8311 -1.1433 -5.5480 23 6 0.4131 -0.6231 -6.7711 24 6 1.0899 0.3966 -7.3669 25 6 2.2246 0.9381 -6.7397 26 6 2.9485 1.9915 -7.3239 27 6 4.0425 2.4912 -6.6871 28 6 4.4583 1.9735 -5.4616 29 6 3.7820 0.9538 -4.8658 30 6 2.6472 0.4118 -5.4932 31 1 -0.3632 0.4979 0.8991 32 1 -0.3634 0.5297 -0.8806 33 1 -0.3633 -1.0275 -0.0182 34 1 1.2918 -0.7864 2.0211 35 1 2.9652 -0.2824 1.6213 36 1 4.0094 -2.3002 2.0155 37 1 6.0073 -4.5409 3.4697 38 1 3.9090 -1.5677 -0.7110 39 1 2.7087 -2.7098 -1.3889 40 1 3.4435 -1.1999 -3.5196 41 1 1.9998 -2.2409 -3.4993 42 1 0.2788 -1.9556 -5.0988 43 1 -0.4586 -1.0377 -7.2555 44 1 0.7562 0.7878 -8.3167 45 1 2.6384 2.4023 -8.2734 46 1 4.5968 3.3010 -7.1380 47 1 5.3302 2.3880 -4.9775 48 1 4.1158 0.5631 -3.9159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989707194.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:36 Heat of formation + Delta-G solvation = 19.577562 kcal Electronic energy + Delta-G solvation = -28770.510732 eV Core-core repulsion = 24983.017819 eV Total energy + Delta-G solvation = -3787.492914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.76398 -39.74594 -37.51136 -36.53059 -34.23265 -33.84704 -31.84612 -31.34159 -30.38199 -30.08217 -28.38611 -27.44360 -25.46680 -23.96203 -23.44743 -23.06101 -22.26341 -20.86869 -20.03515 -18.68814 -17.63533 -17.38680 -17.08273 -16.83454 -16.34682 -15.58471 -15.30487 -14.86753 -14.46157 -14.33967 -14.11459 -13.66762 -13.60416 -13.53563 -13.24930 -13.19452 -13.00620 -12.86238 -12.77925 -12.45476 -12.14713 -12.00921 -11.82184 -11.68150 -11.39120 -11.21790 -11.02868 -11.00438 -10.86491 -10.75775 -10.65949 -10.30577 -10.03620 -9.99446 -9.81525 -9.55443 -9.05937 -8.66792 -8.35952 -7.91946 -7.14264 -5.89954 -3.21062 0.44226 0.96136 1.95789 2.82653 2.89175 3.25317 3.36081 3.42135 3.43376 4.05143 4.39724 4.47320 4.65879 4.72372 4.74339 4.80785 4.91988 5.03981 5.10535 5.13655 5.15804 5.27147 5.28890 5.32865 5.41910 5.44473 5.46500 5.57141 5.60681 5.69352 5.83167 5.83716 5.88147 6.01606 6.08296 6.09499 6.13663 6.16073 6.19747 6.27124 6.34984 6.42298 6.44696 6.50549 6.57146 6.63865 6.74965 6.81591 6.93493 7.58467 7.80607 8.27277 8.39050 9.39559 9.93077 10.27879 11.31953 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.013974 B = 0.002640 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.306044 B =10601.953228 C =11002.336146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.140 3.860 3 H 0.068 0.932 4 C -0.137 4.137 5 C 0.174 3.826 6 H 0.066 0.934 7 N -0.712 5.712 8 C -0.250 4.250 9 H 0.072 0.928 10 C -0.008 4.008 11 N -0.929 5.929 12 Si 0.908 3.092 13 H -0.288 1.288 14 H -0.291 1.291 15 H -0.281 1.281 16 C 0.071 3.929 17 N -0.610 5.610 18 C 0.529 3.471 19 O -0.540 6.540 20 C -0.104 4.104 21 C -0.043 4.043 22 C -0.108 4.108 23 C -0.111 4.111 24 C -0.113 4.113 25 C -0.051 4.051 26 C -0.110 4.110 27 C -0.118 4.118 28 C -0.120 4.120 29 C -0.099 4.099 30 C -0.034 4.034 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.387 0.613 37 H 0.257 0.743 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.124 0.876 46 H 0.121 0.879 47 H 0.122 0.878 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.369 10.616 -17.993 21.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.036 3.964 3 H 0.086 0.914 4 C -0.176 4.176 5 C 0.062 3.938 6 H 0.084 0.916 7 N -0.352 5.352 8 C -0.380 4.380 9 H 0.090 0.910 10 C -0.204 4.204 11 N -0.576 5.576 12 Si 0.738 3.262 13 H -0.216 1.216 14 H -0.217 1.217 15 H -0.206 1.206 16 C -0.055 4.055 17 N -0.344 5.344 18 C 0.318 3.682 19 O -0.418 6.418 20 C -0.144 4.144 21 C -0.043 4.043 22 C -0.126 4.126 23 C -0.129 4.129 24 C -0.131 4.131 25 C -0.051 4.051 26 C -0.128 4.128 27 C -0.136 4.136 28 C -0.138 4.138 29 C -0.117 4.117 30 C -0.035 4.035 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.222 0.778 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.142 0.858 46 H 0.139 0.861 47 H 0.140 0.860 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.750 10.936 -18.173 22.258 hybrid contribution 0.470 -0.924 0.250 1.066 sum -6.280 10.012 -17.924 21.470 Atomic orbital electron populations 1.22127 0.95107 1.02239 1.02372 1.21464 0.94338 0.95853 0.84723 0.91355 1.23003 1.01714 0.97047 0.95867 1.21266 0.92753 0.91257 0.88536 0.91640 1.42328 1.35271 1.04253 1.53356 1.19237 1.12398 0.82661 1.23750 0.90963 1.24772 0.98152 0.98025 0.99497 1.69655 1.20564 1.34298 1.33102 0.86189 0.77700 0.85231 0.77037 1.21560 1.21692 1.20641 1.23528 0.95001 0.87108 0.99895 1.48642 1.50451 1.30869 1.04467 1.20021 0.80971 0.85002 0.82250 1.90687 1.38887 1.28905 1.83319 1.20697 1.02977 1.00353 0.90340 1.19150 0.95517 0.95241 0.94415 1.20698 0.96039 1.00463 0.95425 1.20780 0.99730 0.96852 0.95492 1.20966 0.95095 0.97146 0.99848 1.18042 0.96044 0.96632 0.94348 1.20979 0.95725 0.96213 0.99838 1.20826 0.97125 1.00039 0.95567 1.20841 1.00163 0.97028 0.95740 1.21062 0.94551 0.96667 0.99377 1.17857 0.95600 0.95871 0.94125 0.92043 0.91509 0.92496 0.90186 0.90592 0.77839 0.93293 0.91181 0.91285 0.87837 0.87684 0.86013 0.85988 0.85777 0.85771 0.86146 0.86039 0.85839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.05 37.16 0.34 -1.87 16 2 C 0.14 2.05 3.49 -66.95 -0.23 1.82 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.14 -2.10 6.13 -24.90 -0.15 -2.25 16 5 C 0.17 3.14 3.70 -65.78 -0.24 2.89 16 6 H 0.07 1.21 8.11 -51.93 -0.42 0.79 16 7 N -0.71 -16.32 5.26 -51.35 -0.27 -16.59 16 8 C -0.25 -6.42 9.97 -15.06 -0.15 -6.57 16 9 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 10 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 11 N -0.93 -26.63 13.06 55.49 0.72 -25.90 16 12 Si 0.91 21.28 29.55 -169.99 -5.02 16.25 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 C 0.07 1.13 6.39 -2.53 -0.02 1.12 16 17 N -0.61 -9.25 3.08 -163.02 -0.50 -9.75 16 18 C 0.53 8.14 7.62 -10.99 -0.08 8.05 16 19 O -0.54 -9.85 14.94 5.55 0.08 -9.77 16 20 C -0.10 -1.32 4.23 -29.04 -0.12 -1.44 16 21 C -0.04 -0.56 4.38 -104.53 -0.46 -1.02 16 22 C -0.11 -1.29 9.57 -39.93 -0.38 -1.67 16 23 C -0.11 -1.17 9.95 -39.94 -0.40 -1.57 16 24 C -0.11 -1.20 9.77 -39.49 -0.39 -1.58 16 25 C -0.05 -0.62 5.74 -106.83 -0.61 -1.24 16 26 C -0.11 -1.14 9.77 -39.49 -0.39 -1.52 16 27 C -0.12 -1.18 9.95 -39.93 -0.40 -1.58 16 28 C -0.12 -1.32 9.95 -39.93 -0.40 -1.72 16 29 C -0.10 -1.25 9.28 -39.49 -0.37 -1.62 16 30 C -0.03 -0.47 5.74 -106.84 -0.61 -1.08 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.02 6.77 -51.93 -0.35 0.67 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.15 7.83 -51.93 -0.41 0.75 16 35 H 0.08 1.18 7.99 -51.93 -0.42 0.76 16 36 H 0.39 9.49 7.73 -40.82 -0.32 9.18 16 37 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.07 1.06 7.48 -51.93 -0.39 0.67 16 40 H 0.10 1.20 6.71 -51.93 -0.35 0.85 16 41 H 0.10 1.16 7.74 -51.93 -0.40 0.76 16 42 H 0.12 1.25 8.04 -52.48 -0.42 0.83 16 43 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 44 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 45 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 46 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 47 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 48 H 0.12 1.51 6.49 -52.48 -0.34 1.17 16 LS Contribution 391.29 15.07 5.90 5.90 Total: -1.00 -31.05 391.29 -11.41 -42.47 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -7.16 Total: 10.55 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: -5.16 Total: -13.16 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: -0.05 Total: -52.24 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.08 Total: -9.77 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.05 -11.41 -42.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989707194.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.046 kcal (2) G-P(sol) polarization free energy of solvation -31.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds