Wall clock time and date at job start Tue Mar 31 2020 22:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.87705 * 2 1 4 4 C 1.54327 * 109.88612 * 121.02523 * 2 1 3 5 5 C 1.55154 * 102.94290 * 97.22041 * 4 2 1 6 6 H 1.09002 * 111.00378 * 277.42832 * 5 4 2 7 7 N 1.46500 * 111.00420 * 153.61252 * 5 4 2 8 8 C 1.36934 * 119.99978 * 158.17667 * 7 5 4 9 9 H 1.07995 * 120.00129 * 0.02562 * 8 7 5 10 10 C 1.38818 * 119.99952 * 180.02562 * 8 7 5 11 11 N 1.31613 * 119.99801 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99883 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47074 * 90.00096 * 12 10 8 14 14 H 1.48504 * 109.46998 * 210.00024 * 12 10 8 15 15 H 1.48498 * 109.47045 * 329.99768 * 12 10 8 16 16 C 1.54915 * 101.58176 * 35.50368 * 5 4 2 17 17 N 1.47029 * 109.87916 * 238.82977 * 2 1 3 18 18 C 1.34773 * 125.64802 * 59.57365 * 17 2 1 19 19 O 1.21288 * 120.00122 * 359.97438 * 18 17 2 20 20 C 1.50701 * 120.00203 * 180.02562 * 18 17 2 21 21 C 1.50696 * 109.47254 * 179.97438 * 20 18 17 22 22 C 1.36131 * 120.17300 * 264.72494 * 21 20 18 23 23 C 1.39328 * 120.99594 * 179.77488 * 22 21 20 24 24 C 1.36122 * 120.98593 * 0.47443 * 23 22 21 25 25 C 1.40505 * 119.65374 * 359.77988 * 24 23 22 26 26 C 1.40542 * 121.28221 * 180.02562 * 25 24 23 27 27 C 1.36086 * 119.65387 * 179.97438 * 26 25 24 28 28 C 1.39382 * 120.98930 * 0.02760 * 27 26 25 29 29 C 1.36090 * 120.99493 * 359.95606 * 28 27 26 30 30 C 1.40500 * 120.17662 * 84.99663 * 21 20 18 31 31 H 1.09002 * 109.46599 * 298.97626 * 1 2 3 32 32 H 1.08996 * 109.47347 * 58.97410 * 1 2 3 33 33 H 1.08997 * 109.47232 * 178.98245 * 1 2 3 34 34 H 1.09004 * 110.71649 * 338.85624 * 4 2 1 35 35 H 1.08997 * 110.87056 * 215.65546 * 4 2 1 36 36 H 0.97001 * 120.00052 * 338.18451 * 7 5 4 37 37 H 0.97006 * 120.00093 * 179.97438 * 11 10 8 38 38 H 1.08995 * 110.36257 * 81.82999 * 16 5 4 39 39 H 1.08997 * 110.36405 * 204.14718 * 16 5 4 40 40 H 1.09000 * 109.46797 * 299.99397 * 20 18 17 41 41 H 1.08997 * 109.47378 * 59.99494 * 20 18 17 42 42 H 1.08011 * 119.49927 * 359.97438 * 22 21 20 43 43 H 1.08001 * 119.50805 * 180.23683 * 23 22 21 44 44 H 1.08001 * 120.17735 * 179.79966 * 24 23 22 45 45 H 1.08003 * 120.17434 * 359.96239 * 26 25 24 46 46 H 1.07995 * 119.50803 * 180.02562 * 27 26 25 47 47 H 1.08001 * 119.49992 * 179.97438 * 28 27 26 48 48 H 1.08005 * 120.16796 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0549 -0.7480 1.2436 5 6 2.3518 -2.1686 0.6951 6 1 1.4451 -2.7728 0.6639 7 7 3.3931 -2.8297 1.4856 8 6 3.4963 -4.1951 1.4766 9 1 2.8104 -4.7847 0.8864 10 6 4.4827 -4.8216 2.2261 11 7 5.3182 -4.1032 2.9457 12 14 4.6239 -6.6842 2.2132 13 1 5.5367 -7.1038 1.1196 14 1 5.1655 -7.1486 3.5156 15 1 3.2819 -7.2809 1.9942 16 6 2.8567 -1.8507 -0.7346 17 7 2.0299 -0.7157 -1.1831 18 6 1.7754 -0.3876 -2.4652 19 8 1.0787 0.5723 -2.7188 20 6 2.3555 -1.2140 -3.5839 21 6 1.9228 -0.6406 -4.9087 22 6 0.8311 -1.1433 -5.5480 23 6 0.4131 -0.6231 -6.7711 24 6 1.0899 0.3966 -7.3669 25 6 2.2246 0.9381 -6.7397 26 6 2.9485 1.9915 -7.3239 27 6 4.0425 2.4912 -6.6871 28 6 4.4583 1.9735 -5.4616 29 6 3.7820 0.9538 -4.8658 30 6 2.6472 0.4118 -5.4932 31 1 -0.3632 0.4979 0.8991 32 1 -0.3634 0.5297 -0.8806 33 1 -0.3633 -1.0275 -0.0182 34 1 1.2918 -0.7864 2.0211 35 1 2.9652 -0.2824 1.6213 36 1 4.0094 -2.3002 2.0155 37 1 6.0073 -4.5409 3.4697 38 1 3.9090 -1.5677 -0.7110 39 1 2.7087 -2.7098 -1.3889 40 1 3.4435 -1.1999 -3.5196 41 1 1.9998 -2.2409 -3.4993 42 1 0.2788 -1.9556 -5.0988 43 1 -0.4586 -1.0377 -7.2555 44 1 0.7562 0.7878 -8.3167 45 1 2.6384 2.4023 -8.2734 46 1 4.5968 3.3010 -7.1380 47 1 5.3302 2.3880 -4.9775 48 1 4.1158 0.5631 -3.9159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989707194.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:35 Heat of formation + Delta-G solvation = 4.272662 kcal Electronic energy + Delta-G solvation = -28771.174403 eV Core-core repulsion = 24983.017819 eV Total energy + Delta-G solvation = -3788.156584 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.72780 -40.88943 -38.80783 -37.38747 -35.96566 -34.78938 -33.28538 -32.86369 -31.20190 -30.97344 -29.97604 -28.41955 -26.73070 -25.78598 -24.31964 -23.88672 -23.48050 -22.02614 -21.28891 -19.91631 -19.27180 -18.43831 -18.15887 -17.87196 -17.25270 -16.89944 -16.59484 -16.29687 -15.74861 -15.31140 -15.22790 -15.04981 -14.71782 -14.60958 -14.49098 -14.40178 -14.21702 -14.02647 -13.82791 -13.60536 -13.27612 -13.11081 -12.99431 -12.82035 -12.79448 -12.74314 -12.25887 -12.22510 -12.12123 -12.05067 -11.81728 -11.71080 -11.65696 -11.44879 -11.07874 -10.91277 -10.64165 -9.67048 -9.51001 -9.04410 -8.76049 -7.93753 -5.23571 -0.39637 0.11599 1.09059 1.51700 1.51915 1.60059 1.61120 1.94829 2.16753 2.58024 3.16161 3.38213 3.47733 3.52706 3.80623 3.86971 3.89993 3.96730 3.99566 4.01708 4.12009 4.12461 4.26346 4.34169 4.35534 4.44700 4.47803 4.48278 4.52211 4.59043 4.65188 4.71882 4.78355 4.87905 4.91713 5.02468 5.05504 5.14799 5.21871 5.25122 5.30652 5.34311 5.36107 5.46940 5.52128 5.56332 5.62446 5.71811 5.93549 6.13002 6.27267 6.54832 7.15881 7.35195 8.06525 8.30528 9.29125 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.013974 B = 0.002640 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.306044 B =10601.953228 C =11002.336146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.138 3.862 3 H 0.068 0.932 4 C -0.125 4.125 5 C 0.168 3.832 6 H 0.065 0.935 7 N -0.723 5.723 8 C -0.241 4.241 9 H 0.081 0.919 10 C -0.070 4.070 11 N -0.967 5.967 12 Si 0.968 3.032 13 H -0.288 1.288 14 H -0.300 1.300 15 H -0.269 1.269 16 C 0.085 3.915 17 N -0.609 5.609 18 C 0.531 3.469 19 O -0.569 6.569 20 C -0.098 4.098 21 C -0.068 4.068 22 C -0.116 4.116 23 C -0.120 4.120 24 C -0.112 4.112 25 C -0.075 4.075 26 C -0.110 4.110 27 C -0.125 4.125 28 C -0.123 4.123 29 C -0.127 4.127 30 C -0.058 4.058 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.377 0.623 37 H 0.251 0.749 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.109 0.891 41 H 0.120 0.880 42 H 0.133 0.867 43 H 0.149 0.851 44 H 0.154 0.846 45 H 0.154 0.846 46 H 0.149 0.851 47 H 0.138 0.862 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.499 10.852 -19.953 23.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.035 3.965 3 H 0.086 0.914 4 C -0.164 4.164 5 C 0.058 3.942 6 H 0.083 0.917 7 N -0.362 5.362 8 C -0.373 4.373 9 H 0.098 0.902 10 C -0.262 4.262 11 N -0.617 5.617 12 Si 0.798 3.202 13 H -0.215 1.215 14 H -0.227 1.227 15 H -0.194 1.194 16 C -0.041 4.041 17 N -0.343 5.343 18 C 0.320 3.680 19 O -0.449 6.449 20 C -0.137 4.137 21 C -0.069 4.069 22 C -0.134 4.134 23 C -0.138 4.138 24 C -0.129 4.129 25 C -0.075 4.075 26 C -0.128 4.128 27 C -0.142 4.142 28 C -0.140 4.140 29 C -0.145 4.145 30 C -0.058 4.058 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.209 0.791 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.127 0.873 41 H 0.138 0.862 42 H 0.151 0.849 43 H 0.167 0.833 44 H 0.171 0.829 45 H 0.171 0.829 46 H 0.167 0.833 47 H 0.155 0.845 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.921 11.179 -20.168 24.382 hybrid contribution 0.759 -0.887 0.778 1.403 sum -7.162 10.292 -19.390 23.091 Atomic orbital electron populations 1.22045 0.94061 1.02180 1.02654 1.21511 0.95113 0.95656 0.84211 0.91409 1.22903 1.02009 0.95121 0.96375 1.21410 0.91393 0.92331 0.89084 0.91679 1.42446 1.36157 1.03561 1.54065 1.19615 1.11423 0.84058 1.22188 0.90159 1.25503 0.98643 1.01864 1.00221 1.69800 1.21572 1.35630 1.34690 0.85223 0.77931 0.80791 0.76304 1.21466 1.22664 1.19356 1.23190 0.94443 0.87744 0.98740 1.48649 1.50264 1.30549 1.04800 1.20459 0.80275 0.84708 0.82515 1.90667 1.40276 1.30266 1.83653 1.20682 1.03149 1.00469 0.89418 1.19270 0.96607 0.96192 0.94819 1.20998 0.95653 1.00677 0.96060 1.21124 1.00623 0.96930 0.95139 1.21355 0.94223 0.96667 1.00700 1.18435 0.97134 0.97586 0.94378 1.21366 0.95306 0.95346 1.00747 1.21186 0.97322 1.00610 0.95115 1.21160 1.00320 0.96322 0.96241 1.21146 0.95474 0.98093 0.99761 1.18132 0.96105 0.96433 0.95092 0.89966 0.93066 0.92579 0.88932 0.90916 0.79062 0.94032 0.92113 0.90310 0.87295 0.86200 0.84927 0.83302 0.82865 0.82880 0.83281 0.84458 0.86579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.98 9.05 71.98 0.65 -3.33 16 2 C 0.14 3.95 3.49 45.34 0.16 4.11 16 3 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 4 C -0.13 -3.72 6.13 31.78 0.19 -3.53 16 5 C 0.17 5.93 3.70 46.38 0.17 6.11 16 6 H 0.07 2.33 8.11 -2.39 -0.02 2.31 16 7 N -0.72 -33.09 5.26 -316.37 -1.66 -34.76 16 8 C -0.24 -12.31 9.97 84.04 0.84 -11.47 16 9 H 0.08 3.90 7.83 -2.91 -0.02 3.87 16 10 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 11 N -0.97 -56.32 13.06 21.65 0.28 -56.03 16 12 Si 0.97 43.79 29.55 68.60 2.03 45.82 16 13 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 14 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 15 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 16 C 0.08 2.66 6.39 86.86 0.55 3.22 16 17 N -0.61 -18.16 3.08 -788.06 -2.43 -20.59 16 18 C 0.53 16.27 7.62 87.66 0.67 16.93 16 19 O -0.57 -20.88 14.94 -3.05 -0.05 -20.93 16 20 C -0.10 -2.47 4.23 29.10 0.12 -2.34 16 21 C -0.07 -1.80 4.38 -19.80 -0.09 -1.89 16 22 C -0.12 -2.67 9.57 22.04 0.21 -2.46 16 23 C -0.12 -2.34 9.95 22.04 0.22 -2.12 16 24 C -0.11 -2.16 9.77 22.33 0.22 -1.94 16 25 C -0.08 -1.77 5.74 -21.30 -0.12 -1.89 16 26 C -0.11 -2.06 9.77 22.33 0.22 -1.85 16 27 C -0.12 -2.27 9.95 22.04 0.22 -2.05 16 28 C -0.12 -2.64 9.95 22.05 0.22 -2.42 16 29 C -0.13 -3.28 9.28 22.33 0.21 -3.08 16 30 C -0.06 -1.56 5.74 -21.30 -0.12 -1.68 16 31 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.05 1.52 6.77 -2.39 -0.02 1.51 16 33 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.09 2.52 7.83 -2.39 -0.02 2.50 16 35 H 0.07 2.23 7.99 -2.39 -0.02 2.21 16 36 H 0.38 18.72 7.73 -92.71 -0.72 18.00 16 37 H 0.25 14.30 8.31 -92.70 -0.77 13.53 16 38 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.08 2.33 7.48 -2.39 -0.02 2.31 16 40 H 0.11 2.57 6.71 -2.39 -0.02 2.55 16 41 H 0.12 2.57 7.74 -2.39 -0.02 2.55 16 42 H 0.13 2.59 8.04 -2.90 -0.02 2.57 16 43 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 44 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 45 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 46 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 47 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 48 H 0.12 2.99 6.49 -2.91 -0.02 2.97 16 Total: -1.00 -67.09 391.29 3.43 -63.66 By element: Atomic # 1 Polarization: 37.54 SS G_CDS: 0.25 Total: 37.79 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: 5.01 Total: -14.96 kcal Atomic # 7 Polarization: -107.57 SS G_CDS: -3.81 Total: -111.38 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.05 Total: -20.93 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -67.09 3.43 -63.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989707194.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.935 kcal (2) G-P(sol) polarization free energy of solvation -67.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds