Wall clock time and date at job start Tue Mar 31 2020 22:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.00535 * 2 1 4 4 C 1.54322 * 109.88188 * 238.89715 * 2 1 3 5 5 H 1.09003 * 110.71867 * 336.93617 * 4 2 1 6 6 N 1.46496 * 110.71848 * 100.02750 * 4 2 1 7 7 C 1.34777 * 120.00271 * 202.55776 * 6 4 2 8 8 O 1.21278 * 119.99854 * 0.02562 * 7 6 4 9 9 C 1.50703 * 120.00161 * 180.02562 * 7 6 4 10 10 C 1.50701 * 109.47064 * 180.02562 * 9 7 6 11 11 C 1.36121 * 120.17357 * 264.72892 * 10 9 7 12 12 C 1.39333 * 120.99200 * 179.77546 * 11 10 9 13 13 C 1.36128 * 120.98788 * 0.47509 * 12 11 10 14 14 C 1.40501 * 119.65012 * 359.78243 * 13 12 11 15 15 C 1.40545 * 121.28079 * 180.02562 * 14 13 12 16 16 C 1.36090 * 119.65284 * 179.97438 * 15 14 13 17 17 C 1.39379 * 120.99228 * 0.02562 * 16 15 14 18 18 C 1.36088 * 120.99415 * 359.95684 * 17 16 15 19 19 C 1.40506 * 120.17070 * 84.99881 * 10 9 7 20 20 C 1.55156 * 103.10360 * 218.47983 * 4 2 1 21 21 C 1.54906 * 101.58285 * 35.41710 * 20 4 2 22 22 N 1.47327 * 110.06146 * 121.16828 * 2 1 3 23 23 C 1.36929 * 125.61792 * 298.23998 * 22 2 1 24 24 H 1.08011 * 119.99886 * 359.84601 * 23 22 2 25 25 C 1.38817 * 120.00291 * 179.83883 * 23 22 2 26 26 N 1.31616 * 119.99764 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 119.99954 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47491 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.47135 * 120.00367 * 27 25 23 30 30 H 1.48499 * 109.47020 * 239.99787 * 27 25 23 31 31 H 1.08997 * 109.47424 * 181.10489 * 1 2 3 32 32 H 1.09007 * 109.46931 * 301.09856 * 1 2 3 33 33 H 1.08995 * 109.47038 * 61.09437 * 1 2 3 34 34 H 0.97005 * 120.00266 * 22.56359 * 6 4 2 35 35 H 1.09002 * 109.47152 * 60.00245 * 9 7 6 36 36 H 1.09001 * 109.46980 * 300.00345 * 9 7 6 37 37 H 1.08003 * 119.50266 * 359.97438 * 11 10 9 38 38 H 1.08002 * 119.50595 * 180.27816 * 12 11 10 39 39 H 1.07992 * 120.17476 * 179.79927 * 13 12 11 40 40 H 1.07999 * 120.17397 * 359.95987 * 15 14 13 41 41 H 1.08005 * 119.50281 * 180.02562 * 16 15 14 42 42 H 1.07998 * 119.50186 * 179.97438 * 17 16 15 43 43 H 1.08005 * 120.17199 * 180.02562 * 18 17 16 44 44 H 1.09001 * 111.00213 * 153.48720 * 20 4 2 45 45 H 1.08998 * 111.00886 * 277.29880 * 20 4 2 46 46 H 1.09002 * 110.36838 * 81.82299 * 21 20 4 47 47 H 1.08997 * 110.37147 * 204.14888 * 21 20 4 48 48 H 0.97000 * 119.99653 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0548 -0.7497 -1.2426 5 1 1.3038 -1.4438 -1.6199 6 7 2.4554 0.1958 -2.2875 7 6 2.5055 -0.2029 -3.5739 8 8 2.2185 -1.3443 -3.8666 9 6 2.9182 0.7696 -4.6487 10 6 2.8915 0.0792 -5.9880 11 6 4.0303 -0.4609 -6.5021 12 6 4.0241 -1.1071 -7.7366 13 6 2.8810 -1.2086 -8.4688 14 6 1.6869 -0.6587 -7.9730 15 6 0.4871 -0.7442 -8.7000 16 6 -0.6505 -0.2003 -8.1881 17 6 -0.6452 0.4426 -6.9514 18 6 0.4975 0.5444 -6.2194 19 6 1.6922 -0.0054 -6.7151 20 6 3.2869 -1.5179 -0.6956 21 6 2.8161 -1.8831 0.7342 22 7 2.0354 -0.7162 1.1841 23 6 1.8142 -0.3583 2.4872 24 1 1.2261 0.5188 2.7139 25 6 2.3456 -1.1228 3.5168 26 7 3.0626 -2.1914 3.2405 27 14 2.0432 -0.6349 5.2944 28 1 1.2138 0.5962 5.3356 29 1 1.3331 -1.7346 5.9956 30 1 3.3430 -0.3782 5.9652 31 1 -0.3634 -1.0274 0.0198 32 1 -0.3633 0.5308 0.8800 33 1 -0.3633 0.4967 -0.8996 34 1 2.6848 1.1088 -2.0534 35 1 3.9267 1.1296 -4.4452 36 1 2.2271 1.6124 -4.6609 37 1 4.9518 -0.3903 -5.9433 38 1 4.9406 -1.5310 -8.1197 39 1 2.8918 -1.7095 -9.4254 40 1 0.4680 -1.2388 -9.6598 41 1 -1.5713 -0.2678 -8.7485 42 1 -1.5619 0.8662 -6.5682 43 1 0.4863 1.0451 -5.2625 44 1 3.4810 -2.4146 -1.2841 45 1 4.1666 -0.8749 -0.6657 46 1 2.1879 -2.7736 0.7109 47 1 3.6742 -2.0403 1.3877 48 1 3.4343 -2.7254 3.9599 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088998128.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:21 Heat of formation + Delta-G solvation = 30.729655 kcal Electronic energy + Delta-G solvation = -28668.755762 eV Core-core repulsion = 24881.746439 eV Total energy + Delta-G solvation = -3787.009323 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.77477 -39.46896 -37.58319 -36.59909 -34.00528 -33.85896 -32.03919 -30.49231 -30.40316 -30.26521 -28.78497 -27.49727 -24.61578 -23.99168 -23.43927 -23.10553 -21.52001 -20.35485 -20.11877 -19.48887 -17.67471 -17.15768 -16.93481 -16.72728 -16.37833 -15.77289 -15.14328 -14.80726 -14.40671 -14.31515 -13.99750 -13.93592 -13.62080 -13.57482 -13.37354 -13.18968 -12.82045 -12.78922 -12.21342 -12.15439 -12.02711 -11.81360 -11.57610 -11.43296 -11.14693 -11.06148 -10.91346 -10.87137 -10.83738 -10.53851 -10.41296 -10.07807 -10.03994 -9.76629 -9.63391 -9.50490 -8.70781 -8.69017 -8.59211 -7.96325 -6.88790 -5.66686 -3.09567 0.39926 0.92278 1.91518 2.81028 2.86131 3.37881 3.40388 3.45019 3.46458 4.03356 4.32836 4.47032 4.60683 4.67517 4.75949 4.85443 4.97357 5.02001 5.07348 5.21934 5.24741 5.32150 5.37038 5.37406 5.41609 5.54445 5.62234 5.63889 5.82465 5.83698 5.97985 6.08714 6.11374 6.11982 6.24916 6.30248 6.30692 6.35633 6.41106 6.51569 6.53999 6.60470 6.70164 6.71790 6.86306 6.89422 7.11483 7.51420 7.61314 7.74707 7.84273 8.33332 8.44734 9.19318 9.80084 10.44172 11.36666 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.023357 B = 0.002351 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.503996 B =11905.509178 C =12607.557138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.036 0.964 4 C 0.136 3.864 5 H 0.091 0.909 6 N -0.718 5.718 7 C 0.512 3.488 8 O -0.531 6.531 9 C -0.108 4.108 10 C -0.046 4.046 11 C -0.106 4.106 12 C -0.111 4.111 13 C -0.111 4.111 14 C -0.051 4.051 15 C -0.108 4.108 16 C -0.118 4.118 17 C -0.119 4.119 18 C -0.101 4.101 19 C -0.034 4.034 20 C -0.152 4.152 21 C 0.153 3.847 22 N -0.596 5.596 23 C -0.219 4.219 24 H 0.078 0.922 25 C -0.011 4.011 26 N -0.921 5.921 27 Si 0.914 3.086 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.291 1.291 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.037 0.963 34 H 0.397 0.603 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.014 0.986 47 H 0.109 0.891 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.077 7.303 -23.953 25.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.047 3.953 3 H 0.054 0.946 4 C 0.031 3.969 5 H 0.109 0.891 6 N -0.368 5.368 7 C 0.297 3.703 8 O -0.406 6.406 9 C -0.148 4.148 10 C -0.047 4.047 11 C -0.125 4.125 12 C -0.129 4.129 13 C -0.129 4.129 14 C -0.051 4.051 15 C -0.126 4.126 16 C -0.136 4.136 17 C -0.137 4.137 18 C -0.118 4.118 19 C -0.034 4.034 20 C -0.192 4.192 21 C 0.028 3.972 22 N -0.321 5.321 23 C -0.348 4.348 24 H 0.096 0.904 25 C -0.207 4.207 26 N -0.569 5.569 27 Si 0.744 3.256 28 H -0.206 1.206 29 H -0.218 1.218 30 H -0.218 1.218 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.231 0.769 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.032 0.968 47 H 0.127 0.873 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.241 6.394 -23.923 24.793 hybrid contribution -0.139 0.547 1.126 1.259 sum -1.380 6.941 -22.797 23.870 Atomic orbital electron populations 1.22227 0.97893 1.01435 0.99864 1.21050 0.92528 0.94776 0.86970 0.94620 1.22132 0.97580 0.90806 0.86353 0.89099 1.46087 1.69144 1.15093 1.06518 1.20352 0.77939 0.88853 0.83160 1.90734 1.48042 1.19762 1.82111 1.20734 1.04612 0.98346 0.91066 1.19100 0.92888 0.98564 0.94103 1.20701 0.97989 0.97800 0.95965 1.20793 0.98346 0.99009 0.94766 1.20982 0.92069 0.99879 0.99968 1.18047 0.94219 0.98639 0.94196 1.20993 0.92078 0.99951 0.99606 1.20833 0.98240 0.98411 0.96124 1.20840 0.98244 0.99618 0.94961 1.21036 0.92171 0.99253 0.99387 1.17847 0.93461 0.98231 0.93877 1.23384 0.96767 0.99308 0.99748 1.21945 0.97396 0.88322 0.89536 1.44578 1.59292 1.28146 1.00075 1.19070 1.27188 1.07991 0.80513 0.90423 1.24794 1.00437 0.97377 0.98062 1.69808 1.39248 1.17767 1.30082 0.86010 0.77340 0.77526 0.84677 1.20558 1.21772 1.21770 0.92949 0.92737 0.94349 0.76863 0.87727 0.87930 0.85978 0.85941 0.85738 0.85739 0.86123 0.86043 0.85858 0.92085 0.92045 0.96836 0.87336 0.93743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.15 37.16 0.34 -2.51 16 2 C 0.15 3.06 3.49 -66.79 -0.23 2.83 16 3 H 0.04 0.68 7.70 -51.93 -0.40 0.28 16 4 C 0.14 2.45 2.79 -66.10 -0.18 2.27 16 5 H 0.09 1.80 7.33 -51.93 -0.38 1.42 16 6 N -0.72 -10.11 5.19 -52.03 -0.27 -10.38 16 7 C 0.51 7.33 7.82 -10.98 -0.09 7.25 16 8 O -0.53 -9.96 15.72 5.56 0.09 -9.87 16 9 C -0.11 -1.10 5.23 -29.03 -0.15 -1.26 16 10 C -0.05 -0.55 4.38 -104.53 -0.46 -1.01 16 11 C -0.11 -1.18 9.57 -39.94 -0.38 -1.56 16 12 C -0.11 -1.12 9.95 -39.93 -0.40 -1.52 16 13 C -0.11 -1.13 9.77 -39.49 -0.39 -1.52 16 14 C -0.05 -0.60 5.74 -106.83 -0.61 -1.21 16 15 C -0.11 -1.08 9.77 -39.48 -0.39 -1.46 16 16 C -0.12 -1.12 9.95 -39.93 -0.40 -1.52 16 17 C -0.12 -1.21 9.95 -39.93 -0.40 -1.61 16 18 C -0.10 -1.16 9.28 -39.48 -0.37 -1.53 16 19 C -0.03 -0.43 5.74 -106.83 -0.61 -1.04 16 20 C -0.15 -3.03 6.77 -24.58 -0.17 -3.20 16 21 C 0.15 3.73 5.89 -2.53 -0.01 3.72 16 22 N -0.60 -14.74 3.14 -162.34 -0.51 -15.25 16 23 C -0.22 -5.92 9.91 -15.06 -0.15 -6.07 16 24 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 25 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 26 N -0.92 -26.61 10.09 55.49 0.56 -26.05 16 27 Si 0.91 21.81 29.55 -169.99 -5.02 16.78 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 29 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 30 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 1.03 8.06 -51.93 -0.42 0.61 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.40 4.49 8.34 -40.82 -0.34 4.15 16 35 H 0.10 0.82 8.04 -51.93 -0.42 0.41 16 36 H 0.10 0.83 6.70 -51.93 -0.35 0.48 16 37 H 0.12 1.14 8.04 -52.48 -0.42 0.72 16 38 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 42 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.12 1.28 6.49 -52.48 -0.34 0.94 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.11 2.96 5.87 -51.93 -0.30 2.66 16 48 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 389.36 15.07 5.87 5.87 Total: -1.00 -33.22 389.36 -11.57 -44.80 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -7.15 Total: 5.46 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -5.14 Total: -11.35 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: -0.22 Total: -51.68 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.22 -11.57 -44.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088998128.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.525 kcal (2) G-P(sol) polarization free energy of solvation -33.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds