Wall clock time and date at job start Tue Mar 31 2020 22:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.00535 * 2 1 4 4 C 1.54322 * 109.88188 * 238.89715 * 2 1 3 5 5 H 1.09003 * 110.71867 * 336.93617 * 4 2 1 6 6 N 1.46496 * 110.71848 * 100.02750 * 4 2 1 7 7 C 1.34777 * 120.00271 * 202.55776 * 6 4 2 8 8 O 1.21278 * 119.99854 * 0.02562 * 7 6 4 9 9 C 1.50703 * 120.00161 * 180.02562 * 7 6 4 10 10 C 1.50701 * 109.47064 * 180.02562 * 9 7 6 11 11 C 1.36121 * 120.17357 * 264.72892 * 10 9 7 12 12 C 1.39333 * 120.99200 * 179.77546 * 11 10 9 13 13 C 1.36128 * 120.98788 * 0.47509 * 12 11 10 14 14 C 1.40501 * 119.65012 * 359.78243 * 13 12 11 15 15 C 1.40545 * 121.28079 * 180.02562 * 14 13 12 16 16 C 1.36090 * 119.65284 * 179.97438 * 15 14 13 17 17 C 1.39379 * 120.99228 * 0.02562 * 16 15 14 18 18 C 1.36088 * 120.99415 * 359.95684 * 17 16 15 19 19 C 1.40506 * 120.17070 * 84.99881 * 10 9 7 20 20 C 1.55156 * 103.10360 * 218.47983 * 4 2 1 21 21 C 1.54906 * 101.58285 * 35.41710 * 20 4 2 22 22 N 1.47327 * 110.06146 * 121.16828 * 2 1 3 23 23 C 1.36929 * 125.61792 * 298.23998 * 22 2 1 24 24 H 1.08011 * 119.99886 * 359.84601 * 23 22 2 25 25 C 1.38817 * 120.00291 * 179.83883 * 23 22 2 26 26 N 1.31616 * 119.99764 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 119.99954 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47491 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.47135 * 120.00367 * 27 25 23 30 30 H 1.48499 * 109.47020 * 239.99787 * 27 25 23 31 31 H 1.08997 * 109.47424 * 181.10489 * 1 2 3 32 32 H 1.09007 * 109.46931 * 301.09856 * 1 2 3 33 33 H 1.08995 * 109.47038 * 61.09437 * 1 2 3 34 34 H 0.97005 * 120.00266 * 22.56359 * 6 4 2 35 35 H 1.09002 * 109.47152 * 60.00245 * 9 7 6 36 36 H 1.09001 * 109.46980 * 300.00345 * 9 7 6 37 37 H 1.08003 * 119.50266 * 359.97438 * 11 10 9 38 38 H 1.08002 * 119.50595 * 180.27816 * 12 11 10 39 39 H 1.07992 * 120.17476 * 179.79927 * 13 12 11 40 40 H 1.07999 * 120.17397 * 359.95987 * 15 14 13 41 41 H 1.08005 * 119.50281 * 180.02562 * 16 15 14 42 42 H 1.07998 * 119.50186 * 179.97438 * 17 16 15 43 43 H 1.08005 * 120.17199 * 180.02562 * 18 17 16 44 44 H 1.09001 * 111.00213 * 153.48720 * 20 4 2 45 45 H 1.08998 * 111.00886 * 277.29880 * 20 4 2 46 46 H 1.09002 * 110.36838 * 81.82299 * 21 20 4 47 47 H 1.08997 * 110.37147 * 204.14888 * 21 20 4 48 48 H 0.97000 * 119.99653 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0548 -0.7497 -1.2426 5 1 1.3038 -1.4438 -1.6199 6 7 2.4554 0.1958 -2.2875 7 6 2.5055 -0.2029 -3.5739 8 8 2.2185 -1.3443 -3.8666 9 6 2.9182 0.7696 -4.6487 10 6 2.8915 0.0792 -5.9880 11 6 4.0303 -0.4609 -6.5021 12 6 4.0241 -1.1071 -7.7366 13 6 2.8810 -1.2086 -8.4688 14 6 1.6869 -0.6587 -7.9730 15 6 0.4871 -0.7442 -8.7000 16 6 -0.6505 -0.2003 -8.1881 17 6 -0.6452 0.4426 -6.9514 18 6 0.4975 0.5444 -6.2194 19 6 1.6922 -0.0054 -6.7151 20 6 3.2869 -1.5179 -0.6956 21 6 2.8161 -1.8831 0.7342 22 7 2.0354 -0.7162 1.1841 23 6 1.8142 -0.3583 2.4872 24 1 1.2261 0.5188 2.7139 25 6 2.3456 -1.1228 3.5168 26 7 3.0626 -2.1914 3.2405 27 14 2.0432 -0.6349 5.2944 28 1 1.2138 0.5962 5.3356 29 1 1.3331 -1.7346 5.9956 30 1 3.3430 -0.3782 5.9652 31 1 -0.3634 -1.0274 0.0198 32 1 -0.3633 0.5308 0.8800 33 1 -0.3633 0.4967 -0.8996 34 1 2.6848 1.1088 -2.0534 35 1 3.9267 1.1296 -4.4452 36 1 2.2271 1.6124 -4.6609 37 1 4.9518 -0.3903 -5.9433 38 1 4.9406 -1.5310 -8.1197 39 1 2.8918 -1.7095 -9.4254 40 1 0.4680 -1.2388 -9.6598 41 1 -1.5713 -0.2678 -8.7485 42 1 -1.5619 0.8662 -6.5682 43 1 0.4863 1.0451 -5.2625 44 1 3.4810 -2.4146 -1.2841 45 1 4.1666 -0.8749 -0.6657 46 1 2.1879 -2.7736 0.7109 47 1 3.6742 -2.0403 1.3877 48 1 3.4343 -2.7254 3.9599 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088998128.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:20 Heat of formation + Delta-G solvation = 12.456955 kcal Electronic energy + Delta-G solvation = -28669.548126 eV Core-core repulsion = 24881.746439 eV Total energy + Delta-G solvation = -3787.801686 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.62175 -40.67509 -39.13008 -37.36871 -35.56502 -34.70121 -33.79563 -32.06966 -31.28387 -31.13918 -30.39834 -28.51985 -26.28334 -25.76760 -24.20744 -23.85723 -22.63905 -21.88980 -21.52685 -20.86038 -18.72055 -18.39483 -18.02952 -17.94717 -17.32000 -17.07191 -16.58819 -16.10665 -15.75417 -15.53289 -15.22740 -15.02531 -14.89392 -14.48353 -14.33656 -14.21126 -14.11908 -13.99653 -13.72212 -13.54133 -13.23900 -12.95835 -12.82600 -12.75364 -12.72025 -12.61969 -12.22446 -12.18753 -12.07383 -11.94189 -11.77882 -11.63059 -11.57933 -11.43989 -11.00363 -10.74692 -10.62308 -9.97966 -9.47549 -8.90214 -8.72588 -7.74768 -5.19801 -0.36146 0.15034 1.12695 1.48396 1.49072 1.59110 1.69746 2.05856 2.29775 2.53281 3.22731 3.36073 3.55485 3.58221 3.86010 3.88201 3.93234 3.96750 4.04444 4.09158 4.16661 4.22783 4.33943 4.38834 4.49806 4.50786 4.52614 4.62269 4.65513 4.68443 4.69935 4.80526 4.90489 4.96429 5.05370 5.08752 5.14311 5.25745 5.35033 5.37420 5.39148 5.50196 5.55272 5.59456 5.65233 5.66073 5.74556 5.79796 5.96670 6.16501 6.30266 6.63698 7.11154 7.33593 7.78814 8.42636 9.27429 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.023357 B = 0.002351 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.503996 B =11905.509178 C =12607.557138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.151 3.849 3 H 0.056 0.944 4 C 0.154 3.846 5 H 0.073 0.927 6 N -0.705 5.705 7 C 0.515 3.485 8 O -0.577 6.577 9 C -0.097 4.097 10 C -0.069 4.069 11 C -0.118 4.118 12 C -0.123 4.123 13 C -0.116 4.116 14 C -0.077 4.077 15 C -0.115 4.115 16 C -0.126 4.126 17 C -0.125 4.125 18 C -0.123 4.123 19 C -0.058 4.058 20 C -0.138 4.138 21 C 0.158 3.842 22 N -0.614 5.614 23 C -0.224 4.224 24 H 0.087 0.913 25 C -0.071 4.071 26 N -0.952 5.952 27 Si 0.978 3.022 28 H -0.264 1.264 29 H -0.298 1.298 30 H -0.293 1.293 31 H 0.032 0.968 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.415 0.585 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.136 0.864 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.140 0.860 43 H 0.129 0.871 44 H 0.060 0.940 45 H 0.072 0.928 46 H -0.019 1.019 47 H 0.077 0.923 48 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.475 9.418 -25.635 27.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.044 3.956 3 H 0.074 0.926 4 C 0.048 3.952 5 H 0.091 0.909 6 N -0.358 5.358 7 C 0.302 3.698 8 O -0.456 6.456 9 C -0.136 4.136 10 C -0.069 4.069 11 C -0.136 4.136 12 C -0.141 4.141 13 C -0.134 4.134 14 C -0.077 4.077 15 C -0.132 4.132 16 C -0.144 4.144 17 C -0.142 4.142 18 C -0.141 4.141 19 C -0.058 4.058 20 C -0.177 4.177 21 C 0.032 3.968 22 N -0.340 5.340 23 C -0.353 4.353 24 H 0.104 0.896 25 C -0.263 4.263 26 N -0.602 5.602 27 Si 0.807 3.193 28 H -0.188 1.188 29 H -0.225 1.225 30 H -0.220 1.220 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.253 0.747 35 H 0.152 0.848 36 H 0.145 0.855 37 H 0.153 0.847 38 H 0.163 0.837 39 H 0.166 0.834 40 H 0.166 0.834 41 H 0.164 0.836 42 H 0.158 0.842 43 H 0.147 0.853 44 H 0.079 0.921 45 H 0.091 0.909 46 H -0.001 1.001 47 H 0.095 0.905 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -1.648 8.578 -25.634 27.082 hybrid contribution -0.053 -0.131 1.544 1.551 sum -1.701 8.446 -24.090 25.584 Atomic orbital electron populations 1.22115 0.96615 1.00546 1.01273 1.21266 0.93404 0.95193 0.85714 0.92589 1.21643 0.95922 0.90912 0.86714 0.90898 1.45869 1.68925 1.15226 1.05741 1.21053 0.76439 0.88815 0.83455 1.90722 1.50008 1.22128 1.82747 1.20747 1.06758 0.97517 0.88587 1.19334 0.93109 0.99577 0.94886 1.21027 0.98424 0.97546 0.96569 1.21128 0.99371 0.98933 0.94619 1.21326 0.91685 0.99477 1.00903 1.18437 0.95503 0.99233 0.94550 1.21337 0.91673 0.99793 1.00432 1.21186 0.99229 0.97837 0.96100 1.21176 0.98614 0.99246 0.95199 1.21221 0.92552 1.00225 1.00075 1.18160 0.94110 0.98885 0.94615 1.23175 0.97896 0.99844 0.96809 1.21651 0.95692 0.87699 0.91715 1.44821 1.59766 1.28440 1.00938 1.19443 1.26266 1.07848 0.81711 0.89570 1.25624 1.00972 0.97746 1.01982 1.70056 1.40595 1.18945 1.30650 0.85001 0.77014 0.77411 0.79864 1.18790 1.22511 1.21977 0.94920 0.93311 0.90946 0.74743 0.84844 0.85460 0.84656 0.83692 0.83406 0.83422 0.83605 0.84242 0.85323 0.92123 0.90946 1.00124 0.90471 0.94501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.17 9.15 71.98 0.66 -4.51 16 2 C 0.15 5.77 3.49 45.28 0.16 5.93 16 3 H 0.06 1.96 7.70 -2.39 -0.02 1.94 16 4 C 0.15 5.43 2.79 46.18 0.13 5.56 16 5 H 0.07 2.89 7.33 -2.39 -0.02 2.87 16 6 N -0.71 -18.26 5.19 -436.93 -2.27 -20.53 16 7 C 0.51 13.85 7.82 87.66 0.69 14.53 16 8 O -0.58 -21.41 15.72 -3.02 -0.05 -21.46 16 9 C -0.10 -1.75 5.23 29.10 0.15 -1.60 16 10 C -0.07 -1.55 4.38 -19.80 -0.09 -1.64 16 11 C -0.12 -2.45 9.57 22.04 0.21 -2.24 16 12 C -0.12 -2.30 9.95 22.04 0.22 -2.08 16 13 C -0.12 -2.21 9.77 22.33 0.22 -2.00 16 14 C -0.08 -1.73 5.74 -21.30 -0.12 -1.86 16 15 C -0.11 -2.10 9.77 22.33 0.22 -1.88 16 16 C -0.13 -2.17 9.95 22.04 0.22 -1.95 16 17 C -0.12 -2.37 9.95 22.04 0.22 -2.15 16 18 C -0.12 -2.72 9.28 22.33 0.21 -2.51 16 19 C -0.06 -1.40 5.74 -21.30 -0.12 -1.52 16 20 C -0.14 -5.49 6.77 31.98 0.22 -5.27 16 21 C 0.16 7.99 5.89 86.85 0.51 8.50 16 22 N -0.61 -30.60 3.14 -667.53 -2.10 -32.70 16 23 C -0.22 -12.10 9.91 84.04 0.83 -11.26 16 24 H 0.09 4.41 7.83 -2.90 -0.02 4.39 16 25 C -0.07 -3.99 5.49 84.86 0.47 -3.52 16 26 N -0.95 -56.92 10.09 21.65 0.22 -56.70 16 27 Si 0.98 45.24 29.55 68.60 2.03 47.27 16 28 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 29 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 30 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 31 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.05 1.76 8.06 -2.38 -0.02 1.74 16 33 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.42 7.95 8.34 -92.70 -0.77 7.18 16 35 H 0.13 1.63 8.04 -2.39 -0.02 1.61 16 36 H 0.13 1.66 6.70 -2.39 -0.02 1.65 16 37 H 0.14 2.29 8.04 -2.91 -0.02 2.27 16 38 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 39 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 40 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 41 H 0.15 1.66 8.06 -2.91 -0.02 1.63 16 42 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 43 H 0.13 2.51 6.49 -2.91 -0.02 2.49 16 44 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 46 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 47 H 0.08 4.41 5.87 -2.39 -0.01 4.40 16 48 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -74.77 389.36 3.02 -71.75 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: 0.19 Total: 23.85 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: 4.99 Total: -11.48 kcal Atomic # 7 Polarization: -105.78 SS G_CDS: -4.14 Total: -109.93 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.05 Total: -21.46 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -74.77 3.02 -71.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088998128.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.202 kcal (2) G-P(sol) polarization free energy of solvation -74.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds