Wall clock time and date at job start Tue Mar 31 2020 20:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47254 * 2 1 4 4 N 1.46896 * 109.47403 * 120.00329 * 2 1 3 5 5 C 1.48565 * 111.00487 * 177.92212 * 4 2 1 6 6 C 1.54367 * 104.54096 * 200.90499 * 5 4 2 7 7 H 1.09007 * 110.90604 * 264.15985 * 6 5 4 8 8 C 1.54136 * 105.10639 * 24.07794 * 6 5 4 9 9 H 1.08994 * 110.84114 * 239.34526 * 8 6 5 10 10 C 1.48561 * 110.99891 * 62.49467 * 4 2 1 11 11 C 1.53030 * 109.72408 * 116.66969 * 8 6 5 12 12 H 1.09001 * 109.63972 * 179.79519 * 11 8 6 13 13 C 1.53037 * 109.19765 * 300.54190 * 11 8 6 14 14 C 1.53455 * 109.87112 * 58.97945 * 13 11 8 15 15 C 1.52728 * 109.05976 * 141.38549 * 6 5 4 16 16 H 1.08994 * 110.37412 * 67.83503 * 15 6 5 17 17 N 1.47697 * 108.30966 * 188.93347 * 15 6 5 18 18 C 1.34772 * 122.07110 * 238.60943 * 17 15 6 19 19 O 1.21283 * 120.00323 * 359.72139 * 18 17 15 20 20 C 1.50703 * 120.00038 * 179.71541 * 18 17 15 21 21 S 1.80994 * 109.47251 * 180.02562 * 20 18 17 22 22 C 1.76201 * 99.99969 * 180.02562 * 21 20 18 23 23 H 1.08003 * 120.00017 * 0.02562 * 22 21 20 24 24 C 1.38802 * 120.00233 * 179.97438 * 22 21 20 25 25 N 1.31626 * 120.00250 * 180.02562 * 24 22 21 26 26 Si 1.86804 * 119.99701 * 0.27902 * 24 22 21 27 27 H 1.48502 * 109.47219 * 269.72315 * 26 24 22 28 28 H 1.48495 * 109.47283 * 29.72415 * 26 24 22 29 29 H 1.48499 * 109.46969 * 149.72382 * 26 24 22 30 30 C 1.47641 * 115.84993 * 58.34463 * 17 15 6 31 31 H 1.09006 * 109.46859 * 299.99803 * 1 2 3 32 32 H 1.09003 * 109.47182 * 59.99226 * 1 2 3 33 33 H 1.08997 * 109.47423 * 179.97438 * 1 2 3 34 34 H 1.09006 * 109.46859 * 240.00197 * 2 1 3 35 35 H 1.08995 * 109.46874 * 185.95248 * 3 2 1 36 36 H 1.08994 * 109.47017 * 305.95893 * 3 2 1 37 37 H 1.09002 * 109.46740 * 65.96132 * 3 2 1 38 38 H 1.08996 * 110.42538 * 82.13592 * 5 4 2 39 39 H 1.08998 * 110.42072 * 319.66612 * 5 4 2 40 40 H 1.09004 * 110.40420 * 40.14083 * 10 4 2 41 41 H 1.08996 * 110.40844 * 277.71260 * 10 4 2 42 42 H 1.09002 * 109.38366 * 179.39123 * 13 11 8 43 43 H 1.08999 * 109.37857 * 299.05768 * 13 11 8 44 44 H 1.09001 * 109.58248 * 241.07795 * 14 13 11 45 45 H 1.09004 * 109.36464 * 121.09689 * 14 13 11 46 46 H 1.09001 * 109.47026 * 60.00264 * 20 18 17 47 47 H 1.09003 * 109.47083 * 300.00604 * 20 18 17 48 48 H 0.97001 * 119.99877 * 180.02562 * 25 24 22 49 49 H 1.09008 * 109.98798 * 119.95075 * 30 17 15 50 50 H 1.08996 * 109.99379 * 241.23305 * 30 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 3.5040 -0.7561 1.2088 6 6 3.8360 -1.9193 2.1678 7 1 4.0436 -1.5486 3.1717 8 6 2.5823 -2.8159 2.1609 9 1 2.1655 -2.9075 3.1639 10 6 1.5933 -2.1156 1.2038 11 6 2.9345 -4.1919 1.5914 12 1 2.0479 -4.8259 1.5905 13 6 3.4646 -4.0257 0.1654 14 6 4.7039 -3.1207 0.1719 15 6 5.0243 -2.7009 1.6112 16 1 5.9286 -2.0935 1.6478 17 7 5.1916 -3.9271 2.4173 18 6 6.3354 -4.2000 3.0758 19 8 7.2699 -3.4295 3.0132 20 6 6.4531 -5.4626 3.8902 21 16 8.0952 -5.5414 4.6473 22 6 7.9602 -7.0703 5.5125 23 1 7.0446 -7.6409 5.4611 24 6 9.0308 -7.5421 6.2594 25 7 8.9301 -8.6845 6.9054 26 14 10.6121 -6.5520 6.3535 27 1 11.5226 -6.9679 5.2566 28 1 10.3002 -5.1067 6.2167 29 1 11.2707 -6.7945 7.6622 30 6 4.0261 -4.8323 2.4617 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5140 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 3.1248 1.4443 -0.1066 36 1 1.5922 1.9862 -0.8318 37 1 1.7665 1.9246 0.9386 38 1 3.9223 0.1777 1.5844 39 1 3.8820 -0.9681 0.2087 40 1 1.6701 -2.5385 0.2020 41 1 0.5737 -2.2057 1.5782 42 1 3.7267 -5.0032 -0.2394 43 1 2.6926 -3.5734 -0.4570 44 1 4.5113 -2.2331 -0.4308 45 1 5.5514 -3.6653 -0.2445 46 1 6.3094 -6.3275 3.2424 47 1 5.6928 -5.4634 4.6713 48 1 9.6782 -9.0139 7.4276 49 1 4.2973 -5.8090 2.0607 50 1 3.6736 -4.9359 3.4879 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099430430.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:09 Heat of formation + Delta-G solvation = -26.196758 kcal Electronic energy + Delta-G solvation = -28407.658886 eV Core-core repulsion = 24753.625000 eV Total energy + Delta-G solvation = -3654.033886 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.82440 -38.99706 -37.45267 -34.20132 -32.85774 -32.43971 -32.40169 -29.85933 -28.98332 -28.63199 -26.97207 -25.62582 -24.77061 -23.51088 -21.95021 -21.68782 -20.54746 -19.85328 -17.86048 -17.24267 -16.88480 -16.61074 -16.57068 -15.85010 -15.09387 -15.01010 -14.76336 -14.67170 -14.46658 -13.95703 -13.74914 -13.53409 -13.34038 -12.97104 -12.94784 -12.75598 -12.64376 -12.49899 -12.43719 -12.37224 -12.05535 -11.97634 -11.82015 -11.50724 -11.29730 -11.24107 -11.20005 -11.08660 -11.00030 -10.60266 -10.48918 -10.42459 -10.28625 -9.84014 -9.40690 -8.99258 -8.73301 -8.48222 -8.47898 -6.90474 -6.27966 -3.99379 2.69024 2.97126 3.17667 3.33871 3.51688 3.58314 3.63009 4.09878 4.22064 4.34114 4.38633 4.54875 4.58683 4.65266 4.70061 4.77129 4.80319 4.87267 4.93058 4.97673 5.01305 5.11101 5.15886 5.17757 5.25725 5.28706 5.33592 5.35998 5.43568 5.45522 5.50365 5.51110 5.56443 5.58962 5.62826 5.75900 5.78764 5.79960 5.83535 5.88587 5.95360 6.02773 6.03277 6.06255 6.09340 6.53762 6.54835 6.76923 7.55122 7.95124 8.42493 8.47863 9.18361 10.81237 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.028963 B = 0.002492 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.528864 B =11234.370176 C =11622.525853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.066 3.934 3 C -0.146 4.146 4 N -0.505 5.505 5 C 0.034 3.966 6 C -0.095 4.095 7 H 0.087 0.913 8 C -0.080 4.080 9 H 0.086 0.914 10 C 0.033 3.967 11 C -0.093 4.093 12 H 0.089 0.911 13 C -0.116 4.116 14 C -0.133 4.133 15 C 0.151 3.849 16 H 0.104 0.896 17 N -0.615 5.615 18 C 0.538 3.462 19 O -0.521 6.521 20 C -0.118 4.118 21 S -0.144 6.144 22 C -0.520 4.520 23 H 0.088 0.912 24 C 0.095 3.905 25 N -0.881 5.881 26 Si 0.857 3.143 27 H -0.267 1.267 28 H -0.235 1.235 29 H -0.274 1.274 30 C 0.117 3.883 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.040 0.960 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.270 0.730 49 H 0.073 0.927 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.326 15.351 -16.718 29.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.043 4.043 3 C -0.203 4.203 4 N -0.229 5.229 5 C -0.094 4.094 6 C -0.115 4.115 7 H 0.105 0.895 8 C -0.099 4.099 9 H 0.104 0.896 10 C -0.095 4.095 11 C -0.112 4.112 12 H 0.107 0.893 13 C -0.153 4.153 14 C -0.172 4.172 15 C 0.047 3.953 16 H 0.122 0.878 17 N -0.351 5.351 18 C 0.326 3.674 19 O -0.396 6.396 20 C -0.269 4.269 21 S 0.083 5.917 22 C -0.667 4.667 23 H 0.106 0.894 24 C -0.113 4.113 25 N -0.517 5.517 26 Si 0.681 3.319 27 H -0.192 1.192 28 H -0.159 1.159 29 H -0.200 1.200 30 C -0.006 4.006 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.113 0.887 47 H 0.114 0.886 48 H 0.080 0.920 49 H 0.091 0.909 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.054 16.651 -16.225 29.435 hybrid contribution -0.134 -1.305 -0.411 1.375 sum -18.188 15.345 -16.635 29.035 Atomic orbital electron populations 1.21837 0.94232 1.01950 1.02161 1.21797 0.95892 0.95477 0.91117 1.21843 1.00948 0.95145 1.02374 1.65451 1.07651 1.12749 1.37046 1.23340 0.88602 0.98686 0.98794 1.22176 0.94516 0.94645 1.00136 0.89461 1.21890 0.94870 0.93658 0.99499 0.89605 1.23342 0.99192 0.88102 0.98853 1.21457 0.98078 0.96553 0.95103 0.89258 1.21691 0.97377 1.00236 0.95984 1.22137 0.98509 0.99978 0.96530 1.21125 0.98486 0.86162 0.89542 0.87813 1.48498 1.13849 1.22337 1.50421 1.20186 0.81224 0.87332 0.78646 1.90685 1.37432 1.49502 1.61994 1.23270 1.04637 0.97410 1.01565 1.84781 1.13476 1.31460 1.62006 1.22309 1.04958 1.04996 1.34481 0.89427 1.24714 0.98447 0.94484 0.93696 1.69937 1.32354 1.19121 1.30316 0.86734 0.83563 0.83171 0.78383 1.19246 1.15894 1.19960 1.21908 0.85374 0.93088 1.00185 0.91737 0.92366 0.92718 0.94232 0.92701 0.92300 0.91631 0.90067 0.92592 0.92766 0.90323 0.91466 0.91491 0.90731 0.91248 0.88713 0.88628 0.91964 0.90893 0.90917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.11 37.16 0.34 -0.54 16 2 C 0.07 0.46 2.44 -67.71 -0.17 0.30 16 3 C -0.15 -0.95 8.96 37.16 0.33 -0.61 16 4 N -0.50 -4.15 5.20 -222.00 -1.15 -5.30 16 5 C 0.03 0.29 4.74 -2.19 -0.01 0.28 16 6 C -0.09 -0.95 3.31 -89.45 -0.30 -1.24 16 7 H 0.09 1.02 8.14 -51.92 -0.42 0.60 16 8 C -0.08 -0.68 3.13 -89.27 -0.28 -0.96 16 9 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 10 C 0.03 0.24 4.74 -2.16 -0.01 0.23 16 11 C -0.09 -0.75 2.86 -90.28 -0.26 -1.01 16 12 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 13 C -0.12 -0.91 5.34 -26.48 -0.14 -1.05 16 14 C -0.13 -1.26 5.55 -26.33 -0.15 -1.40 16 15 C 0.15 1.76 3.09 -67.25 -0.21 1.55 16 16 H 0.10 1.43 7.20 -51.93 -0.37 1.05 16 17 N -0.61 -8.39 2.82 -163.90 -0.46 -8.86 16 18 C 0.54 9.89 7.77 -10.99 -0.09 9.81 16 19 O -0.52 -11.45 15.45 5.56 0.09 -11.36 16 20 C -0.12 -2.35 5.10 36.01 0.18 -2.16 16 21 S -0.14 -3.69 18.54 -107.50 -1.99 -5.68 16 22 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 23 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 24 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 25 N -0.88 -26.67 13.97 55.49 0.78 -25.90 16 26 Si 0.86 21.95 27.74 -169.99 -4.72 17.23 16 27 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.23 -6.02 6.73 56.52 0.38 -5.64 16 29 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 30 C 0.12 1.24 5.29 -3.11 -0.02 1.22 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.33 7.01 -51.93 -0.36 -0.04 16 34 H 0.04 0.28 7.98 -51.93 -0.41 -0.13 16 35 H 0.05 0.36 7.31 -51.93 -0.38 -0.02 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.72 7.82 -51.93 -0.41 0.31 16 39 H 0.06 0.46 4.99 -51.93 -0.26 0.20 16 40 H 0.05 0.38 5.10 -51.93 -0.26 0.12 16 41 H 0.08 0.57 7.69 -51.93 -0.40 0.17 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.46 5.79 -51.93 -0.30 0.16 16 44 H 0.07 0.61 5.64 -51.93 -0.29 0.32 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.09 1.76 8.11 -51.92 -0.42 1.34 16 47 H 0.10 1.78 8.14 -51.91 -0.42 1.36 16 48 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 49 H 0.07 0.75 8.11 -51.92 -0.42 0.33 16 50 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 380.25 15.07 5.73 5.73 Total: -1.00 -33.00 380.25 -10.80 -43.80 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -8.52 Total: -2.02 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -0.55 Total: -7.65 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: -0.84 Total: -40.06 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.72 Total: 17.23 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -1.99 Total: -5.68 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.00 -10.80 -43.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099430430.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.603 kcal (2) G-P(sol) polarization free energy of solvation -32.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds