Wall clock time and date at job start Tue Mar 31 2020 20:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47254 * 2 1 4 4 N 1.46896 * 109.47403 * 120.00329 * 2 1 3 5 5 C 1.48565 * 111.00487 * 177.92212 * 4 2 1 6 6 C 1.54367 * 104.54096 * 200.90499 * 5 4 2 7 7 H 1.09007 * 110.90604 * 264.15985 * 6 5 4 8 8 C 1.54136 * 105.10639 * 24.07794 * 6 5 4 9 9 H 1.08994 * 110.84114 * 239.34526 * 8 6 5 10 10 C 1.48561 * 110.99891 * 62.49467 * 4 2 1 11 11 C 1.53030 * 109.72408 * 116.66969 * 8 6 5 12 12 H 1.09001 * 109.63972 * 179.79519 * 11 8 6 13 13 C 1.53037 * 109.19765 * 300.54190 * 11 8 6 14 14 C 1.53455 * 109.87112 * 58.97945 * 13 11 8 15 15 C 1.52728 * 109.05976 * 141.38549 * 6 5 4 16 16 H 1.08994 * 110.37412 * 67.83503 * 15 6 5 17 17 N 1.47697 * 108.30966 * 188.93347 * 15 6 5 18 18 C 1.34772 * 122.07110 * 238.60943 * 17 15 6 19 19 O 1.21283 * 120.00323 * 359.72139 * 18 17 15 20 20 C 1.50703 * 120.00038 * 179.71541 * 18 17 15 21 21 S 1.80994 * 109.47251 * 180.02562 * 20 18 17 22 22 C 1.76201 * 99.99969 * 180.02562 * 21 20 18 23 23 H 1.08003 * 120.00017 * 0.02562 * 22 21 20 24 24 C 1.38802 * 120.00233 * 179.97438 * 22 21 20 25 25 N 1.31626 * 120.00250 * 180.02562 * 24 22 21 26 26 Si 1.86804 * 119.99701 * 0.27902 * 24 22 21 27 27 H 1.48502 * 109.47219 * 269.72315 * 26 24 22 28 28 H 1.48495 * 109.47283 * 29.72415 * 26 24 22 29 29 H 1.48499 * 109.46969 * 149.72382 * 26 24 22 30 30 C 1.47641 * 115.84993 * 58.34463 * 17 15 6 31 31 H 1.09006 * 109.46859 * 299.99803 * 1 2 3 32 32 H 1.09003 * 109.47182 * 59.99226 * 1 2 3 33 33 H 1.08997 * 109.47423 * 179.97438 * 1 2 3 34 34 H 1.09006 * 109.46859 * 240.00197 * 2 1 3 35 35 H 1.08995 * 109.46874 * 185.95248 * 3 2 1 36 36 H 1.08994 * 109.47017 * 305.95893 * 3 2 1 37 37 H 1.09002 * 109.46740 * 65.96132 * 3 2 1 38 38 H 1.08996 * 110.42538 * 82.13592 * 5 4 2 39 39 H 1.08998 * 110.42072 * 319.66612 * 5 4 2 40 40 H 1.09004 * 110.40420 * 40.14083 * 10 4 2 41 41 H 1.08996 * 110.40844 * 277.71260 * 10 4 2 42 42 H 1.09002 * 109.38366 * 179.39123 * 13 11 8 43 43 H 1.08999 * 109.37857 * 299.05768 * 13 11 8 44 44 H 1.09001 * 109.58248 * 241.07795 * 14 13 11 45 45 H 1.09004 * 109.36464 * 121.09689 * 14 13 11 46 46 H 1.09001 * 109.47026 * 60.00264 * 20 18 17 47 47 H 1.09003 * 109.47083 * 300.00604 * 20 18 17 48 48 H 0.97001 * 119.99877 * 180.02562 * 25 24 22 49 49 H 1.09008 * 109.98798 * 119.95075 * 30 17 15 50 50 H 1.08996 * 109.99379 * 241.23305 * 30 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 3.5040 -0.7561 1.2088 6 6 3.8360 -1.9193 2.1678 7 1 4.0436 -1.5486 3.1717 8 6 2.5823 -2.8159 2.1609 9 1 2.1655 -2.9075 3.1639 10 6 1.5933 -2.1156 1.2038 11 6 2.9345 -4.1919 1.5914 12 1 2.0479 -4.8259 1.5905 13 6 3.4646 -4.0257 0.1654 14 6 4.7039 -3.1207 0.1719 15 6 5.0243 -2.7009 1.6112 16 1 5.9286 -2.0935 1.6478 17 7 5.1916 -3.9271 2.4173 18 6 6.3354 -4.2000 3.0758 19 8 7.2699 -3.4295 3.0132 20 6 6.4531 -5.4626 3.8902 21 16 8.0952 -5.5414 4.6473 22 6 7.9602 -7.0703 5.5125 23 1 7.0446 -7.6409 5.4611 24 6 9.0308 -7.5421 6.2594 25 7 8.9301 -8.6845 6.9054 26 14 10.6121 -6.5520 6.3535 27 1 11.5226 -6.9679 5.2566 28 1 10.3002 -5.1067 6.2167 29 1 11.2707 -6.7945 7.6622 30 6 4.0261 -4.8323 2.4617 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5140 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 3.1248 1.4443 -0.1066 36 1 1.5922 1.9862 -0.8318 37 1 1.7665 1.9246 0.9386 38 1 3.9223 0.1777 1.5844 39 1 3.8820 -0.9681 0.2087 40 1 1.6701 -2.5385 0.2020 41 1 0.5737 -2.2057 1.5782 42 1 3.7267 -5.0032 -0.2394 43 1 2.6926 -3.5734 -0.4570 44 1 4.5113 -2.2331 -0.4308 45 1 5.5514 -3.6653 -0.2445 46 1 6.3094 -6.3275 3.2424 47 1 5.6928 -5.4634 4.6713 48 1 9.6782 -9.0139 7.4276 49 1 4.2973 -5.8090 2.0607 50 1 3.6736 -4.9359 3.4879 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099430430.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:08 Heat of formation + Delta-G solvation = -47.181850 kcal Electronic energy + Delta-G solvation = -28408.568868 eV Core-core repulsion = 24753.625000 eV Total energy + Delta-G solvation = -3654.943868 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.66741 -40.20073 -38.34059 -35.10591 -34.68446 -33.67297 -33.28320 -30.90938 -30.07156 -29.32099 -27.87782 -27.57816 -25.69642 -24.26869 -22.71110 -22.43605 -21.33498 -20.90545 -19.76566 -18.34861 -17.94768 -17.52628 -17.36208 -17.14857 -16.85905 -16.21908 -15.85325 -15.76527 -15.33999 -15.14221 -14.92780 -14.63654 -14.37354 -14.17483 -13.99532 -13.71140 -13.65820 -13.35725 -13.28172 -13.13915 -13.08001 -13.01846 -12.89414 -12.68122 -12.64770 -12.60050 -12.18305 -11.93857 -11.87323 -11.75881 -11.62120 -11.30544 -11.25251 -11.18385 -11.09924 -10.76364 -10.55186 -9.62561 -9.31420 -9.02289 -8.52819 -6.23960 0.95291 1.29748 1.44125 1.51354 1.52143 2.01131 2.23813 2.66587 2.85219 2.98966 3.33483 3.48146 3.63822 3.66296 3.94441 3.95832 4.00389 4.01820 4.11069 4.15690 4.18687 4.24320 4.32856 4.37712 4.42570 4.46144 4.53481 4.59065 4.65541 4.69701 4.80713 4.84198 4.85225 4.89839 4.96764 4.98469 5.03002 5.07980 5.13288 5.20167 5.24051 5.28172 5.31461 5.36627 5.44214 5.54247 5.69616 5.92506 6.09863 6.19730 6.30611 6.92278 7.07114 8.59503 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.028963 B = 0.002492 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.528864 B =11234.370176 C =11622.525853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.064 3.936 3 C -0.144 4.144 4 N -0.516 5.516 5 C 0.041 3.959 6 C -0.092 4.092 7 H 0.063 0.937 8 C -0.078 4.078 9 H 0.082 0.918 10 C 0.039 3.961 11 C -0.084 4.084 12 H 0.118 0.882 13 C -0.112 4.112 14 C -0.128 4.128 15 C 0.147 3.853 16 H 0.076 0.924 17 N -0.602 5.602 18 C 0.537 3.463 19 O -0.567 6.567 20 C -0.102 4.102 21 S -0.177 6.177 22 C -0.527 4.527 23 H 0.062 0.938 24 C 0.046 3.954 25 N -0.915 5.915 26 Si 0.914 3.086 27 H -0.262 1.262 28 H -0.238 1.238 29 H -0.258 1.258 30 C 0.105 3.895 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.045 0.955 35 H 0.050 0.950 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.055 0.945 46 H 0.109 0.891 47 H 0.108 0.892 48 H 0.277 0.723 49 H 0.081 0.919 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.377 15.954 -18.608 32.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.044 4.044 3 C -0.202 4.202 4 N -0.241 5.241 5 C -0.087 4.087 6 C -0.112 4.112 7 H 0.081 0.919 8 C -0.097 4.097 9 H 0.100 0.900 10 C -0.088 4.088 11 C -0.103 4.103 12 H 0.136 0.864 13 C -0.149 4.149 14 C -0.166 4.166 15 C 0.044 3.956 16 H 0.094 0.906 17 N -0.336 5.336 18 C 0.324 3.676 19 O -0.446 6.446 20 C -0.253 4.253 21 S 0.050 5.950 22 C -0.675 4.675 23 H 0.081 0.919 24 C -0.160 4.160 25 N -0.553 5.553 26 Si 0.736 3.264 27 H -0.187 1.187 28 H -0.162 1.162 29 H -0.182 1.182 30 C -0.017 4.017 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.109 0.891 45 H 0.073 0.927 46 H 0.127 0.873 47 H 0.126 0.874 48 H 0.087 0.913 49 H 0.099 0.901 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.164 17.247 -18.134 32.138 hybrid contribution 0.351 -1.462 0.127 1.509 sum -19.813 15.785 -18.007 31.080 Atomic orbital electron populations 1.21811 0.93399 1.02302 1.02310 1.21863 0.96510 0.95378 0.90646 1.21835 1.00782 0.95206 1.02360 1.65454 1.06999 1.13494 1.38117 1.23227 0.89282 0.97610 0.98569 1.22069 0.94586 0.95441 0.99148 0.91861 1.21883 0.94137 0.93740 0.99911 0.89973 1.23328 0.99043 0.87416 0.99042 1.21476 0.97983 0.96366 0.94426 0.86357 1.21706 0.96881 1.00213 0.96117 1.22104 0.99026 1.00974 0.94495 1.21261 0.98189 0.85182 0.91008 0.90599 1.48520 1.13147 1.23259 1.48688 1.19913 0.82208 0.86424 0.79035 1.90665 1.39372 1.50635 1.63919 1.23216 1.00858 0.99144 1.02052 1.84720 1.18466 1.29490 1.62373 1.22428 1.04114 1.06096 1.34836 0.91933 1.25550 1.01519 0.95457 0.93424 1.70010 1.33686 1.20475 1.31158 0.85876 0.79910 0.81462 0.79177 1.18663 1.16248 1.18211 1.22270 0.84888 0.93121 1.01413 0.92599 0.91244 0.92242 0.93692 0.93112 0.91064 0.92628 0.90834 0.91798 0.91524 0.89519 0.90972 0.89387 0.89065 0.92654 0.87282 0.87387 0.91333 0.90056 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.11 71.98 0.66 -0.67 16 2 C 0.06 0.73 2.44 44.92 0.11 0.84 16 3 C -0.14 -1.64 8.96 71.98 0.64 -0.99 16 4 N -0.52 -7.35 5.20 -856.28 -4.45 -11.81 16 5 C 0.04 0.66 4.74 86.45 0.41 1.07 16 6 C -0.09 -1.77 3.31 -10.04 -0.03 -1.81 16 7 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 8 C -0.08 -1.13 3.13 -9.92 -0.03 -1.16 16 9 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 10 C 0.04 0.45 4.74 86.46 0.41 0.86 16 11 C -0.08 -1.07 2.86 -10.57 -0.03 -1.10 16 12 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 13 C -0.11 -1.37 5.34 30.76 0.16 -1.20 16 14 C -0.13 -2.17 5.55 30.85 0.17 -2.00 16 15 C 0.15 3.36 3.09 44.78 0.14 3.50 16 16 H 0.08 2.18 7.20 -2.39 -0.02 2.16 16 17 N -0.60 -16.10 2.82 -790.85 -2.23 -18.33 16 18 C 0.54 19.88 7.77 87.66 0.68 20.56 16 19 O -0.57 -25.61 15.45 -3.04 -0.05 -25.66 16 20 C -0.10 -4.04 5.10 71.24 0.36 -3.68 16 21 S -0.18 -9.20 18.54 -56.49 -1.05 -10.25 16 22 C -0.53 -31.09 10.04 67.95 0.68 -30.40 16 23 H 0.06 3.88 8.03 -2.91 -0.02 3.85 16 24 C 0.05 2.73 5.50 84.86 0.47 3.19 16 25 N -0.92 -56.04 13.97 21.65 0.30 -55.74 16 26 Si 0.91 45.60 27.74 68.60 1.90 47.51 16 27 H -0.26 -12.74 7.11 99.48 0.71 -12.03 16 28 H -0.24 -11.96 6.73 99.48 0.67 -11.29 16 29 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 30 C 0.10 1.99 5.29 86.36 0.46 2.45 16 31 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.06 0.51 7.01 -2.39 -0.02 0.49 16 34 H 0.05 0.49 7.98 -2.38 -0.02 0.47 16 35 H 0.05 0.61 7.31 -2.39 -0.02 0.59 16 36 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.07 1.28 7.82 -2.39 -0.02 1.26 16 39 H 0.06 0.91 4.99 -2.39 -0.01 0.90 16 40 H 0.07 0.63 5.10 -2.38 -0.01 0.62 16 41 H 0.09 0.93 7.69 -2.39 -0.02 0.91 16 42 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.09 0.78 5.79 -2.39 -0.01 0.76 16 44 H 0.09 1.26 5.64 -2.39 -0.01 1.24 16 45 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 46 H 0.11 4.00 8.11 -2.39 -0.02 3.98 16 47 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 48 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 49 H 0.08 1.47 8.11 -2.38 -0.02 1.45 16 50 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -72.94 380.25 0.57 -72.37 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 0.88 Total: 12.43 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: 5.26 Total: -10.54 kcal Atomic # 7 Polarization: -79.50 SS G_CDS: -6.38 Total: -85.87 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.05 Total: -25.66 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.90 Total: 47.51 kcal Atomic # 16 Polarization: -9.20 SS G_CDS: -1.05 Total: -10.25 kcal Total: -72.94 0.57 -72.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099430430.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.191 kcal (2) G-P(sol) polarization free energy of solvation -72.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds