Wall clock time and date at job start Tue Mar 31 2020 20:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47245 * 2 1 4 4 N 1.46901 * 109.47043 * 120.00447 * 2 1 3 5 5 C 1.48576 * 110.99879 * 179.97438 * 4 2 1 6 6 C 1.54375 * 104.55849 * 200.94803 * 5 4 2 7 7 H 1.08999 * 110.78413 * 263.73247 * 6 5 4 8 8 C 1.54139 * 105.09957 * 23.94579 * 6 5 4 9 9 H 1.08994 * 110.97368 * 239.20236 * 8 6 5 10 10 C 1.48554 * 111.00264 * 64.57428 * 4 2 1 11 11 C 1.53289 * 109.33932 * 116.53863 * 8 6 5 12 12 H 1.08997 * 110.93988 * 182.19051 * 11 8 6 13 13 C 1.53327 * 108.74094 * 60.48054 * 11 8 6 14 14 C 1.52935 * 109.59505 * 299.35892 * 13 11 8 15 15 C 1.52981 * 109.07071 * 141.61448 * 6 5 4 16 16 H 1.09003 * 110.13440 * 65.68101 * 15 6 5 17 17 C 1.53616 * 109.10942 * 305.29578 * 15 6 5 18 18 N 1.47633 * 106.73081 * 300.25953 * 17 15 6 19 19 C 1.34777 * 122.05906 * 180.02562 * 18 17 15 20 20 O 1.21287 * 119.99917 * 179.97438 * 19 18 17 21 21 C 1.50697 * 120.00120 * 359.97438 * 19 18 17 22 22 S 1.81000 * 109.47170 * 179.97438 * 21 19 18 23 23 C 1.76197 * 100.00013 * 180.02562 * 22 21 19 24 24 H 1.08001 * 119.99878 * 359.97438 * 23 22 21 25 25 C 1.38801 * 120.00347 * 180.02562 * 23 22 21 26 26 N 1.31628 * 120.00366 * 180.02562 * 25 23 22 27 27 Si 1.86804 * 119.99641 * 359.97438 * 25 23 22 28 28 H 1.48503 * 109.46815 * 90.00458 * 27 25 23 29 29 H 1.48497 * 109.47332 * 210.00629 * 27 25 23 30 30 H 1.48500 * 109.47109 * 330.00799 * 27 25 23 31 31 H 1.08996 * 109.47032 * 59.99719 * 1 2 3 32 32 H 1.08997 * 109.47287 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46661 * 299.99914 * 1 2 3 34 34 H 1.09006 * 109.46661 * 240.00086 * 2 1 3 35 35 H 1.09001 * 109.46940 * 180.02562 * 3 2 1 36 36 H 1.08996 * 109.47335 * 300.00096 * 3 2 1 37 37 H 1.08993 * 109.47095 * 60.00258 * 3 2 1 38 38 H 1.08998 * 110.41831 * 82.17462 * 5 4 2 39 39 H 1.09000 * 110.51763 * 319.77149 * 5 4 2 40 40 H 1.08997 * 110.41327 * 277.74971 * 10 4 2 41 41 H 1.08998 * 110.41068 * 40.06897 * 10 4 2 42 42 H 1.08992 * 109.44950 * 59.40137 * 13 11 8 43 43 H 1.08999 * 109.44621 * 179.32302 * 13 11 8 44 44 H 1.08996 * 109.38255 * 240.48885 * 14 13 11 45 45 H 1.09007 * 109.37606 * 120.81556 * 14 13 11 46 46 H 1.08994 * 109.99362 * 180.95784 * 17 15 6 47 47 H 1.08998 * 109.99957 * 59.56917 * 17 15 6 48 48 H 1.09004 * 109.47089 * 299.99918 * 21 19 18 49 49 H 1.09005 * 109.47136 * 59.99827 * 21 19 18 50 50 H 0.96998 * 119.99676 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 3.5049 -0.7130 1.2334 6 6 3.8554 -1.8783 2.1833 7 1 4.0423 -1.5117 3.1927 8 6 2.6276 -2.8094 2.1466 9 1 2.1985 -2.9286 3.1414 10 6 1.6358 -2.1275 1.1796 11 6 3.0363 -4.1657 1.5608 12 1 2.1776 -4.8329 1.4870 13 6 4.1195 -4.7818 2.4542 14 6 5.3394 -3.8602 2.4909 15 6 5.0808 -2.6152 1.6395 16 1 5.9541 -1.9635 1.6687 17 6 4.8065 -3.0462 0.1908 18 7 3.6243 -3.9299 0.2269 19 6 3.1138 -4.4876 -0.8888 20 8 2.1411 -5.2085 -0.8159 21 6 3.7514 -4.2155 -2.2269 22 16 2.8437 -5.1005 -3.5188 23 6 3.7771 -4.6185 -4.9334 24 1 4.6265 -3.9610 -4.8214 25 6 3.4202 -5.0830 -6.1917 26 7 4.1177 -4.7233 -7.2484 27 14 1.9505 -6.2198 -6.3854 28 1 0.7254 -5.4110 -6.6094 29 1 2.1696 -7.1186 -7.5469 30 1 1.7883 -7.0333 -5.1537 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8901 34 1 1.8933 -0.5139 -0.8901 35 1 3.1301 1.4424 -0.0005 36 1 1.6768 1.9563 -0.8899 37 1 1.6768 1.9563 0.8899 38 1 3.8892 0.2278 1.6276 39 1 3.9073 -0.8997 0.2378 40 1 0.6128 -2.2523 1.5346 41 1 1.7408 -2.5353 0.1743 42 1 3.7289 -4.9075 3.4639 43 1 4.4103 -5.7532 2.0543 44 1 6.2066 -4.3923 2.0997 45 1 5.5352 -3.5603 3.5204 46 1 5.6650 -3.5882 -0.2057 47 1 4.5994 -2.1714 -0.4256 48 1 3.7242 -3.1452 -2.4314 49 1 4.7866 -4.5564 -2.2121 50 1 3.8684 -5.0482 -8.1277 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099430433.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:22 Heat of formation + Delta-G solvation = -30.024388 kcal Electronic energy + Delta-G solvation = -29234.025782 eV Core-core repulsion = 25579.825917 eV Total energy + Delta-G solvation = -3654.199864 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.75377 -38.70817 -37.51412 -33.87715 -33.05077 -32.62125 -32.45231 -29.44249 -28.95000 -28.42675 -26.60081 -25.66169 -25.18082 -23.39373 -21.91945 -21.26637 -20.37834 -19.96232 -17.86216 -17.17507 -16.85158 -16.62823 -16.36821 -15.62688 -15.04926 -14.97145 -14.68265 -14.54714 -14.33460 -14.25100 -13.71284 -13.35865 -13.22136 -12.97839 -12.86082 -12.77576 -12.43304 -12.30796 -12.23073 -12.16969 -12.12173 -11.93752 -11.84357 -11.29756 -11.27530 -11.14567 -11.02581 -10.99213 -10.85353 -10.64230 -10.53344 -10.37523 -10.28687 -9.86508 -9.43094 -9.01761 -8.57941 -8.51115 -8.47723 -6.93481 -6.30431 -4.02140 2.67446 2.93631 3.16944 3.31746 3.49215 3.58074 3.77156 4.21864 4.23578 4.31788 4.38366 4.63385 4.73500 4.76483 4.81866 4.87489 4.91841 4.95661 5.03458 5.08765 5.09471 5.14805 5.21981 5.25764 5.35258 5.40994 5.43106 5.55227 5.56001 5.62454 5.68677 5.69522 5.71979 5.75083 5.76260 5.81539 5.85117 5.87036 5.89917 5.97627 5.99438 6.00296 6.10389 6.13108 6.17243 6.55431 6.72574 6.96114 7.52263 7.92626 8.39793 8.44569 9.15897 10.78849 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012011 B = 0.003874 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.594923 B = 7225.395653 C = 8352.027946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.063 3.937 3 C -0.143 4.143 4 N -0.504 5.504 5 C 0.029 3.971 6 C -0.078 4.078 7 H 0.085 0.915 8 C -0.093 4.093 9 H 0.091 0.909 10 C 0.038 3.962 11 C 0.148 3.852 12 H 0.104 0.896 13 C -0.128 4.128 14 C -0.111 4.111 15 C -0.093 4.093 16 H 0.089 0.911 17 C 0.111 3.889 18 N -0.612 5.612 19 C 0.537 3.463 20 O -0.520 6.520 21 C -0.119 4.119 22 S -0.141 6.141 23 C -0.521 4.521 24 H 0.087 0.913 25 C 0.097 3.903 26 N -0.880 5.880 27 Si 0.856 3.144 28 H -0.267 1.267 29 H -0.274 1.274 30 H -0.235 1.235 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.044 0.956 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.091 0.909 49 H 0.095 0.905 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.816 9.111 22.672 24.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.045 4.045 3 C -0.200 4.200 4 N -0.228 5.228 5 C -0.099 4.099 6 C -0.097 4.097 7 H 0.104 0.896 8 C -0.113 4.113 9 H 0.109 0.891 10 C -0.090 4.090 11 C 0.044 3.956 12 H 0.122 0.878 13 C -0.166 4.166 14 C -0.148 4.148 15 C -0.112 4.112 16 H 0.107 0.893 17 C -0.011 4.011 18 N -0.349 5.349 19 C 0.325 3.675 20 O -0.395 6.395 21 C -0.269 4.269 22 S 0.085 5.915 23 C -0.669 4.669 24 H 0.105 0.895 25 C -0.112 4.112 26 N -0.517 5.517 27 Si 0.681 3.319 28 H -0.192 1.192 29 H -0.199 1.199 30 H -0.159 1.159 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.110 0.890 49 H 0.113 0.887 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.843 8.322 22.981 24.456 hybrid contribution 1.070 0.079 -1.315 1.697 sum 0.227 8.401 21.666 23.239 Atomic orbital electron populations 1.21804 0.94139 1.02164 1.01918 1.21810 0.96131 0.95239 0.91337 1.21833 1.00863 0.95268 1.02078 1.65486 1.08194 1.11887 1.37243 1.23345 0.89132 0.98428 0.98946 1.21841 0.93931 0.94431 0.99512 0.89649 1.22284 0.95337 0.94292 0.99401 0.89071 1.23147 0.98986 0.87676 0.99168 1.21326 0.96583 0.95950 0.81758 0.87753 1.21911 0.95689 0.99238 0.99793 1.21476 0.98091 0.95434 0.99822 1.21447 0.98374 0.97264 0.94114 0.89317 1.22069 0.88261 0.93839 0.96970 1.48497 1.30784 1.49353 1.06253 1.20168 0.83521 0.79051 0.84772 1.90692 1.26167 1.36568 1.86037 1.23268 1.03819 1.04895 0.94941 1.84777 1.42865 1.64041 0.99826 1.22305 1.17547 1.35592 0.91424 0.89480 1.24698 0.96513 0.95371 0.94606 1.69936 1.39197 1.43716 0.98849 0.86748 0.82973 0.82001 0.80219 1.19211 1.19906 1.15925 0.92213 0.92595 0.92025 0.93821 0.92783 0.92213 0.91968 0.90369 0.92892 0.90451 0.92737 0.90872 0.91329 0.91620 0.91542 0.90963 0.90965 0.89048 0.88696 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.15 37.16 0.34 -1.18 16 2 C 0.06 0.71 2.44 -67.71 -0.17 0.54 16 3 C -0.14 -1.34 9.05 37.16 0.34 -1.01 16 4 N -0.50 -5.46 5.20 -222.01 -1.15 -6.62 16 5 C 0.03 0.28 4.64 -2.18 -0.01 0.27 16 6 C -0.08 -0.66 3.11 -89.31 -0.28 -0.94 16 7 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 8 C -0.09 -0.92 3.16 -89.15 -0.28 -1.20 16 9 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 10 C 0.04 0.45 4.89 -2.18 -0.01 0.44 16 11 C 0.15 1.69 2.94 -66.97 -0.20 1.49 16 12 H 0.10 1.41 7.19 -51.93 -0.37 1.03 16 13 C -0.13 -1.17 5.85 -26.60 -0.16 -1.33 16 14 C -0.11 -0.85 5.66 -26.75 -0.15 -1.00 16 15 C -0.09 -0.75 2.87 -90.29 -0.26 -1.01 16 16 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 17 C 0.11 1.19 4.94 -3.10 -0.02 1.17 16 18 N -0.61 -8.19 1.92 -163.58 -0.31 -8.50 16 19 C 0.54 9.71 6.99 -10.99 -0.08 9.63 16 20 O -0.52 -11.21 15.45 5.55 0.09 -11.13 16 21 C -0.12 -2.35 5.10 36.00 0.18 -2.17 16 22 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 16 23 C -0.52 -15.05 10.04 30.94 0.31 -14.74 16 24 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 25 C 0.10 2.83 5.50 -17.43 -0.10 2.74 16 26 N -0.88 -26.58 13.97 55.49 0.78 -25.81 16 27 Si 0.86 21.85 27.74 -169.99 -4.71 17.14 16 28 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 29 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 30 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.65 7.07 -51.93 -0.37 0.28 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.04 0.58 7.97 -51.93 -0.41 0.16 16 35 H 0.05 0.49 6.94 -51.93 -0.36 0.13 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.67 7.67 -51.93 -0.40 0.27 16 39 H 0.05 0.55 5.13 -51.93 -0.27 0.28 16 40 H 0.08 0.91 7.70 -51.93 -0.40 0.51 16 41 H 0.05 0.80 6.05 -51.93 -0.31 0.49 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 47 H 0.07 0.79 5.76 -51.93 -0.30 0.49 16 48 H 0.09 1.72 8.12 -51.91 -0.42 1.30 16 49 H 0.09 1.78 8.12 -51.91 -0.42 1.36 16 50 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 381.86 15.07 5.75 5.75 Total: -1.00 -32.55 381.86 -10.77 -43.32 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -8.69 Total: -0.28 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -0.53 Total: -8.28 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: -0.69 Total: -40.93 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.14 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.55 -10.77 -43.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099430433.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.297 kcal (2) G-P(sol) polarization free energy of solvation -32.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds