Wall clock time and date at job start Tue Mar 31 2020 20:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47245 * 2 1 4 4 N 1.46901 * 109.47043 * 120.00447 * 2 1 3 5 5 C 1.48576 * 110.99879 * 179.97438 * 4 2 1 6 6 C 1.54375 * 104.55849 * 200.94803 * 5 4 2 7 7 H 1.08999 * 110.78413 * 263.73247 * 6 5 4 8 8 C 1.54139 * 105.09957 * 23.94579 * 6 5 4 9 9 H 1.08994 * 110.97368 * 239.20236 * 8 6 5 10 10 C 1.48554 * 111.00264 * 64.57428 * 4 2 1 11 11 C 1.53289 * 109.33932 * 116.53863 * 8 6 5 12 12 H 1.08997 * 110.93988 * 182.19051 * 11 8 6 13 13 C 1.53327 * 108.74094 * 60.48054 * 11 8 6 14 14 C 1.52935 * 109.59505 * 299.35892 * 13 11 8 15 15 C 1.52981 * 109.07071 * 141.61448 * 6 5 4 16 16 H 1.09003 * 110.13440 * 65.68101 * 15 6 5 17 17 C 1.53616 * 109.10942 * 305.29578 * 15 6 5 18 18 N 1.47633 * 106.73081 * 300.25953 * 17 15 6 19 19 C 1.34777 * 122.05906 * 180.02562 * 18 17 15 20 20 O 1.21287 * 119.99917 * 179.97438 * 19 18 17 21 21 C 1.50697 * 120.00120 * 359.97438 * 19 18 17 22 22 S 1.81000 * 109.47170 * 179.97438 * 21 19 18 23 23 C 1.76197 * 100.00013 * 180.02562 * 22 21 19 24 24 H 1.08001 * 119.99878 * 359.97438 * 23 22 21 25 25 C 1.38801 * 120.00347 * 180.02562 * 23 22 21 26 26 N 1.31628 * 120.00366 * 180.02562 * 25 23 22 27 27 Si 1.86804 * 119.99641 * 359.97438 * 25 23 22 28 28 H 1.48503 * 109.46815 * 90.00458 * 27 25 23 29 29 H 1.48497 * 109.47332 * 210.00629 * 27 25 23 30 30 H 1.48500 * 109.47109 * 330.00799 * 27 25 23 31 31 H 1.08996 * 109.47032 * 59.99719 * 1 2 3 32 32 H 1.08997 * 109.47287 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46661 * 299.99914 * 1 2 3 34 34 H 1.09006 * 109.46661 * 240.00086 * 2 1 3 35 35 H 1.09001 * 109.46940 * 180.02562 * 3 2 1 36 36 H 1.08996 * 109.47335 * 300.00096 * 3 2 1 37 37 H 1.08993 * 109.47095 * 60.00258 * 3 2 1 38 38 H 1.08998 * 110.41831 * 82.17462 * 5 4 2 39 39 H 1.09000 * 110.51763 * 319.77149 * 5 4 2 40 40 H 1.08997 * 110.41327 * 277.74971 * 10 4 2 41 41 H 1.08998 * 110.41068 * 40.06897 * 10 4 2 42 42 H 1.08992 * 109.44950 * 59.40137 * 13 11 8 43 43 H 1.08999 * 109.44621 * 179.32302 * 13 11 8 44 44 H 1.08996 * 109.38255 * 240.48885 * 14 13 11 45 45 H 1.09007 * 109.37606 * 120.81556 * 14 13 11 46 46 H 1.08994 * 109.99362 * 180.95784 * 17 15 6 47 47 H 1.08998 * 109.99957 * 59.56917 * 17 15 6 48 48 H 1.09004 * 109.47089 * 299.99918 * 21 19 18 49 49 H 1.09005 * 109.47136 * 59.99827 * 21 19 18 50 50 H 0.96998 * 119.99676 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 3.5049 -0.7130 1.2334 6 6 3.8554 -1.8783 2.1833 7 1 4.0423 -1.5117 3.1927 8 6 2.6276 -2.8094 2.1466 9 1 2.1985 -2.9286 3.1414 10 6 1.6358 -2.1275 1.1796 11 6 3.0363 -4.1657 1.5608 12 1 2.1776 -4.8329 1.4870 13 6 4.1195 -4.7818 2.4542 14 6 5.3394 -3.8602 2.4909 15 6 5.0808 -2.6152 1.6395 16 1 5.9541 -1.9635 1.6687 17 6 4.8065 -3.0462 0.1908 18 7 3.6243 -3.9299 0.2269 19 6 3.1138 -4.4876 -0.8888 20 8 2.1411 -5.2085 -0.8159 21 6 3.7514 -4.2155 -2.2269 22 16 2.8437 -5.1005 -3.5188 23 6 3.7771 -4.6185 -4.9334 24 1 4.6265 -3.9610 -4.8214 25 6 3.4202 -5.0830 -6.1917 26 7 4.1177 -4.7233 -7.2484 27 14 1.9505 -6.2198 -6.3854 28 1 0.7254 -5.4110 -6.6094 29 1 2.1696 -7.1186 -7.5469 30 1 1.7883 -7.0333 -5.1537 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8901 34 1 1.8933 -0.5139 -0.8901 35 1 3.1301 1.4424 -0.0005 36 1 1.6768 1.9563 -0.8899 37 1 1.6768 1.9563 0.8899 38 1 3.8892 0.2278 1.6276 39 1 3.9073 -0.8997 0.2378 40 1 0.6128 -2.2523 1.5346 41 1 1.7408 -2.5353 0.1743 42 1 3.7289 -4.9075 3.4639 43 1 4.4103 -5.7532 2.0543 44 1 6.2066 -4.3923 2.0997 45 1 5.5352 -3.5603 3.5204 46 1 5.6650 -3.5882 -0.2057 47 1 4.5994 -2.1714 -0.4256 48 1 3.7242 -3.1452 -2.4314 49 1 4.7866 -4.5564 -2.2121 50 1 3.8684 -5.0482 -8.1277 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099430433.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:21 Heat of formation + Delta-G solvation = -50.250058 kcal Electronic energy + Delta-G solvation = -29234.902832 eV Core-core repulsion = 25579.825917 eV Total energy + Delta-G solvation = -3655.076915 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.66498 -39.98558 -38.49225 -34.89845 -34.71470 -33.99663 -33.48307 -30.73722 -29.95726 -29.26782 -27.91125 -27.44077 -26.16319 -24.24636 -22.79204 -22.05474 -21.49613 -20.96708 -19.82908 -18.45170 -17.76694 -17.53080 -17.42225 -17.16707 -16.70872 -16.18925 -16.00633 -15.70397 -15.28594 -15.22867 -15.13578 -14.90717 -14.21910 -14.13776 -14.07605 -13.79923 -13.53556 -13.39041 -13.25510 -13.17454 -13.05967 -13.01929 -12.94838 -12.86846 -12.64113 -12.58581 -12.06518 -11.95479 -11.90963 -11.84631 -11.70683 -11.40309 -11.21669 -11.19794 -11.07383 -10.76792 -10.59898 -9.63738 -9.45887 -9.06267 -8.55944 -6.27639 0.91544 1.27151 1.41246 1.48365 1.49381 2.00271 2.20941 2.62861 2.82293 2.91760 3.37678 3.46555 3.60304 3.66952 3.90980 3.95482 4.00385 4.03173 4.09782 4.11766 4.18724 4.28672 4.32344 4.34919 4.36857 4.43058 4.52533 4.61152 4.62452 4.75160 4.77531 4.84945 4.86544 4.89601 4.90673 4.93988 4.98590 5.02516 5.14773 5.17866 5.21591 5.30169 5.31067 5.34291 5.38145 5.57964 5.66247 5.86413 6.06085 6.07107 6.28435 6.89057 7.05077 8.56654 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012011 B = 0.003874 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.594923 B = 7225.395653 C = 8352.027946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.061 3.939 3 C -0.136 4.136 4 N -0.499 5.499 5 C 0.026 3.974 6 C -0.070 4.070 7 H 0.113 0.887 8 C -0.086 4.086 9 H 0.112 0.888 10 C 0.039 3.961 11 C 0.142 3.858 12 H 0.077 0.923 13 C -0.123 4.123 14 C -0.106 4.106 15 C -0.084 4.084 16 H 0.117 0.883 17 C 0.099 3.901 18 N -0.597 5.597 19 C 0.537 3.463 20 O -0.564 6.564 21 C -0.102 4.102 22 S -0.172 6.172 23 C -0.530 4.530 24 H 0.060 0.940 25 C 0.050 3.950 26 N -0.915 5.915 27 Si 0.912 3.088 28 H -0.262 1.262 29 H -0.256 1.256 30 H -0.238 1.238 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.071 0.929 34 H 0.014 0.986 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.040 0.960 40 H 0.071 0.929 41 H 0.017 0.983 42 H 0.096 0.904 43 H 0.051 0.949 44 H 0.066 0.934 45 H 0.094 0.906 46 H 0.077 0.923 47 H 0.069 0.931 48 H 0.098 0.902 49 H 0.106 0.894 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.722 10.169 25.715 27.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.048 4.048 3 C -0.193 4.193 4 N -0.223 5.223 5 C -0.101 4.101 6 C -0.088 4.088 7 H 0.131 0.869 8 C -0.105 4.105 9 H 0.130 0.870 10 C -0.090 4.090 11 C 0.039 3.961 12 H 0.095 0.905 13 C -0.161 4.161 14 C -0.144 4.144 15 C -0.102 4.102 16 H 0.135 0.865 17 C -0.023 4.023 18 N -0.331 5.331 19 C 0.324 3.676 20 O -0.443 6.443 21 C -0.253 4.253 22 S 0.055 5.945 23 C -0.678 4.678 24 H 0.078 0.922 25 C -0.156 4.156 26 N -0.553 5.553 27 Si 0.734 3.266 28 H -0.187 1.187 29 H -0.180 1.180 30 H -0.162 1.162 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.032 0.968 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.114 0.886 39 H 0.058 0.942 40 H 0.089 0.911 41 H 0.036 0.964 42 H 0.115 0.885 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.112 0.888 46 H 0.095 0.905 47 H 0.087 0.913 48 H 0.116 0.884 49 H 0.125 0.875 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.103 9.411 26.058 27.705 hybrid contribution 0.838 -0.148 -2.185 2.344 sum 0.940 9.263 23.873 25.624 Atomic orbital electron populations 1.21775 0.94029 1.01266 1.02618 1.21834 0.96351 0.96223 0.90385 1.21777 1.01151 0.93760 1.02643 1.65528 1.09359 1.10856 1.36582 1.23449 0.87992 0.99895 0.98806 1.21882 0.93024 0.93348 1.00588 0.86921 1.22285 0.95709 0.93133 0.99422 0.86988 1.23068 0.99564 0.88618 0.97729 1.21510 0.96714 0.96914 0.80947 0.90517 1.21902 0.95591 0.98599 1.00054 1.21487 0.96983 0.94581 1.01317 1.21480 0.99195 0.97932 0.91633 0.86485 1.22401 0.86993 0.93200 0.99679 1.48479 1.30868 1.47998 1.05779 1.19824 0.83165 0.79323 0.85286 1.90667 1.28058 1.38980 1.86604 1.23199 1.03573 1.04321 0.94222 1.84683 1.43894 1.65368 1.00581 1.22423 1.17114 1.35106 0.93138 0.92162 1.25519 0.99031 0.96726 0.94330 1.70008 1.40777 1.44956 0.99543 0.85900 0.79773 0.80404 0.80499 1.18707 1.17971 1.16240 0.91828 0.94281 0.90950 0.96815 0.92242 0.91944 0.91076 0.88598 0.94150 0.91069 0.96425 0.88517 0.93020 0.91505 0.88776 0.90476 0.91295 0.88365 0.87532 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 9.15 71.98 0.66 -2.34 16 2 C 0.06 1.35 2.44 44.92 0.11 1.46 16 3 C -0.14 -2.36 9.05 71.98 0.65 -1.71 16 4 N -0.50 -10.22 5.20 -856.30 -4.45 -14.67 16 5 C 0.03 0.43 4.64 86.45 0.40 0.83 16 6 C -0.07 -0.91 3.11 -9.95 -0.03 -0.94 16 7 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 8 C -0.09 -1.51 3.16 -9.84 -0.03 -1.54 16 9 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 10 C 0.04 0.91 4.89 86.45 0.42 1.33 16 11 C 0.14 3.13 2.94 44.97 0.13 3.26 16 12 H 0.08 2.14 7.19 -2.39 -0.02 2.12 16 13 C -0.12 -1.94 5.85 30.68 0.18 -1.76 16 14 C -0.11 -1.18 5.66 30.58 0.17 -1.01 16 15 C -0.08 -1.02 2.87 -10.58 -0.03 -1.05 16 16 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 17 C 0.10 1.96 4.94 86.37 0.43 2.38 16 18 N -0.60 -15.88 1.92 -789.84 -1.51 -17.39 16 19 C 0.54 20.02 6.99 87.66 0.61 20.64 16 20 O -0.56 -25.44 15.45 -3.05 -0.05 -25.49 16 21 C -0.10 -4.16 5.10 71.23 0.36 -3.80 16 22 S -0.17 -9.01 18.55 -56.49 -1.05 -10.05 16 23 C -0.53 -31.54 10.04 67.95 0.68 -30.86 16 24 H 0.06 3.78 8.03 -2.91 -0.02 3.76 16 25 C 0.05 2.95 5.50 84.86 0.47 3.42 16 26 N -0.92 -56.17 13.97 21.65 0.30 -55.87 16 27 Si 0.91 45.67 27.74 68.60 1.90 47.57 16 28 H -0.26 -12.83 7.11 99.48 0.71 -12.12 16 29 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 30 H -0.24 -11.98 6.74 99.48 0.67 -11.31 16 31 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.04 0.95 7.07 -2.39 -0.02 0.93 16 33 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.01 0.38 7.97 -2.38 -0.02 0.37 16 35 H 0.06 0.96 6.94 -2.39 -0.02 0.94 16 36 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.10 1.28 7.67 -2.39 -0.02 1.26 16 39 H 0.04 0.78 5.13 -2.39 -0.01 0.77 16 40 H 0.07 1.72 7.70 -2.39 -0.02 1.70 16 41 H 0.02 0.55 6.05 -2.39 -0.01 0.53 16 42 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 46 H 0.08 1.49 8.12 -2.39 -0.02 1.47 16 47 H 0.07 1.45 5.76 -2.39 -0.01 1.44 16 48 H 0.10 3.83 8.12 -2.39 -0.02 3.81 16 49 H 0.11 4.06 8.12 -2.39 -0.02 4.04 16 50 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -73.64 381.86 1.20 -72.44 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 0.87 Total: 15.16 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: 5.19 Total: -11.69 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -5.66 Total: -87.93 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.05 Total: -25.49 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.90 Total: 47.57 kcal Atomic # 16 Polarization: -9.01 SS G_CDS: -1.05 Total: -10.05 kcal Total: -73.64 1.20 -72.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099430433.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.187 kcal (2) G-P(sol) polarization free energy of solvation -73.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds