Wall clock time and date at job start Tue Mar 31 2020 20:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47093 * 2 1 4 4 N 1.46904 * 109.46952 * 174.74881 * 3 2 1 5 5 C 1.48578 * 110.99636 * 174.68904 * 4 3 2 6 6 C 1.54361 * 104.61761 * 200.88432 * 5 4 3 7 7 H 1.08995 * 110.88415 * 264.34175 * 6 5 4 8 8 C 1.54139 * 105.09706 * 24.20963 * 6 5 4 9 9 H 1.08999 * 110.85953 * 239.06396 * 8 6 5 10 10 C 1.48660 * 111.11278 * 59.26604 * 4 3 2 11 11 C 1.53041 * 109.71277 * 116.36376 * 8 6 5 12 12 H 1.09003 * 109.64628 * 180.66000 * 11 8 6 13 13 C 1.53069 * 109.18695 * 300.80311 * 11 8 6 14 14 C 1.52914 * 110.02698 * 59.33879 * 13 11 8 15 15 C 1.53201 * 109.04945 * 141.47207 * 6 5 4 16 16 H 1.09003 * 110.52394 * 67.45035 * 15 6 5 17 17 N 1.47645 * 108.10778 * 189.10994 * 15 6 5 18 18 C 1.34779 * 122.03174 * 238.66819 * 17 15 6 19 19 O 1.21278 * 119.99964 * 359.97438 * 18 17 15 20 20 C 1.50696 * 119.99927 * 179.97438 * 18 17 15 21 21 S 1.81009 * 109.47073 * 179.97438 * 20 18 17 22 22 C 1.76204 * 99.99817 * 179.97438 * 21 20 18 23 23 H 1.08003 * 120.00212 * 359.97438 * 22 21 20 24 24 C 1.38801 * 119.99815 * 180.02562 * 22 21 20 25 25 N 1.31627 * 119.99676 * 359.97438 * 24 22 21 26 26 Si 1.86792 * 119.99971 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47425 * 89.99735 * 26 24 22 28 28 H 1.48499 * 109.47055 * 209.99662 * 26 24 22 29 29 H 1.48503 * 109.47253 * 329.99584 * 26 24 22 30 30 C 1.47570 * 115.93589 * 58.65890 * 17 15 6 31 31 H 1.09004 * 109.47312 * 180.02562 * 1 2 3 32 32 H 1.09011 * 109.47115 * 299.99534 * 1 2 3 33 33 H 1.09002 * 109.47984 * 59.99396 * 1 2 3 34 34 H 1.09009 * 109.46804 * 240.00903 * 2 1 3 35 35 H 1.08997 * 109.47307 * 120.00512 * 2 1 3 36 36 H 1.09002 * 109.46774 * 54.75005 * 3 2 1 37 37 H 1.08995 * 109.47063 * 294.74805 * 3 2 1 38 38 H 1.08990 * 110.43172 * 82.06915 * 5 4 3 39 39 H 1.09002 * 110.42632 * 319.69851 * 5 4 3 40 40 H 1.09002 * 110.29223 * 39.92788 * 10 4 3 41 41 H 1.09003 * 110.53219 * 277.61215 * 10 4 3 42 42 H 1.08997 * 109.37674 * 179.51515 * 13 11 8 43 43 H 1.08998 * 109.37252 * 299.28612 * 13 11 8 44 44 H 1.09011 * 109.44428 * 120.68773 * 14 13 11 45 45 H 1.08994 * 109.44998 * 240.60355 * 14 13 11 46 46 H 1.09006 * 109.47399 * 299.99086 * 20 18 17 47 47 H 1.08999 * 109.47507 * 59.99862 * 20 18 17 48 48 H 0.97000 * 119.99983 * 180.02562 * 25 24 22 49 49 H 1.09000 * 110.00028 * 240.85262 * 30 17 15 50 50 H 1.09001 * 109.99503 * 119.46820 * 30 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5035 1.4444 0.1268 5 6 4.0468 2.8217 0.0027 6 6 5.5283 2.6229 -0.3826 7 1 6.1676 2.6607 0.4994 8 6 5.5877 1.2323 -1.0448 9 1 6.2714 0.5752 -0.5072 10 6 4.1389 0.7004 -0.9924 11 6 6.0099 1.3753 -2.5089 12 1 6.0402 0.3925 -2.9793 13 6 5.0001 2.2643 -3.2390 14 6 4.9412 3.6420 -2.5780 15 6 5.9271 3.6922 -1.4046 16 1 5.9237 4.6805 -0.9448 17 7 7.2677 3.3544 -1.9228 18 6 8.3113 4.1999 -1.8106 19 8 8.1646 5.2761 -1.2710 20 6 9.6605 3.8079 -2.3556 21 16 10.8442 5.1437 -2.0541 22 6 12.2911 4.4377 -2.7704 23 1 12.2489 3.4542 -3.2147 24 6 13.4853 5.1451 -2.7625 25 7 13.5367 6.3435 -2.2205 26 14 15.0193 4.3964 -3.5211 27 1 15.0949 4.7703 -4.9563 28 1 16.2210 4.9060 -2.8129 29 1 14.9617 2.9177 -3.3972 30 6 7.3956 2.0348 -2.5708 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8901 33 1 -0.3635 0.5139 -0.8899 34 1 1.8933 -0.5137 -0.8902 35 1 1.8933 -0.5139 0.8899 36 1 1.6018 1.9827 0.8393 37 1 1.7555 1.9285 -0.9332 38 1 3.9686 3.3487 0.9535 39 1 3.5206 3.3693 -0.7793 40 1 3.6223 0.9121 -1.9286 41 1 4.1344 -0.3708 -0.7906 42 1 5.3026 2.3754 -4.2803 43 1 4.0140 1.8020 -3.1962 44 1 5.2068 4.4065 -3.3082 45 1 3.9312 3.8258 -2.2116 46 1 10.0030 2.8998 -1.8595 47 1 9.5811 3.6284 -3.4278 48 1 14.3712 6.8381 -2.2153 49 1 8.1229 1.4251 -2.0347 50 1 7.7038 2.1577 -3.6091 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099432490.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:28 Heat of formation + Delta-G solvation = -30.446526 kcal Electronic energy + Delta-G solvation = -28091.094048 eV Core-core repulsion = 24436.875878 eV Total energy + Delta-G solvation = -3654.218170 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.74698 -38.82216 -37.19920 -34.37783 -32.92857 -32.46360 -32.41544 -30.69400 -29.04795 -28.12595 -26.21913 -25.46532 -24.48770 -23.00263 -22.26003 -21.57791 -20.82086 -19.80622 -17.83629 -17.29838 -16.77969 -16.54556 -16.36725 -15.87537 -15.29281 -14.86397 -14.79174 -14.62289 -14.38987 -14.10829 -13.94519 -13.48763 -13.36092 -13.02953 -12.94873 -12.79251 -12.61154 -12.42236 -12.34431 -12.17324 -11.96598 -11.78746 -11.71104 -11.46042 -11.30088 -11.13882 -11.05533 -11.01041 -10.99539 -10.75370 -10.45302 -10.38888 -10.25571 -9.79456 -9.28630 -9.05422 -8.72269 -8.40001 -8.21119 -6.48367 -6.20381 -3.90680 2.89699 3.09412 3.22834 3.26031 3.30750 3.59717 3.67915 4.14515 4.21368 4.24287 4.41514 4.55258 4.64272 4.68278 4.79734 4.81113 4.85015 4.95110 4.98467 5.03746 5.05611 5.14588 5.14708 5.21845 5.28774 5.31892 5.34383 5.39526 5.42358 5.50130 5.54863 5.61333 5.63514 5.63785 5.68722 5.76027 5.81647 5.83831 5.86669 5.92980 5.98677 6.05603 6.10160 6.14084 6.16814 6.53762 6.62795 6.75308 7.60513 7.65310 8.36442 8.60706 9.24836 10.87052 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.031845 B = 0.002275 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.039841 B =12305.614970 C =12605.262630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C 0.045 3.955 4 N -0.510 5.510 5 C 0.032 3.968 6 C -0.094 4.094 7 H 0.088 0.912 8 C -0.080 4.080 9 H 0.085 0.915 10 C 0.032 3.968 11 C -0.093 4.093 12 H 0.088 0.912 13 C -0.116 4.116 14 C -0.134 4.134 15 C 0.151 3.849 16 H 0.105 0.895 17 N -0.616 5.616 18 C 0.539 3.461 19 O -0.519 6.519 20 C -0.148 4.148 21 S -0.062 6.062 22 C -0.534 4.534 23 H 0.072 0.928 24 C 0.073 3.927 25 N -0.867 5.867 26 Si 0.918 3.082 27 H -0.277 1.277 28 H -0.282 1.282 29 H -0.272 1.272 30 C 0.120 3.880 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.033 0.967 38 H 0.081 0.919 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.268 0.732 49 H 0.071 0.929 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.208 -14.459 0.574 29.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.084 4.084 4 N -0.234 5.234 5 C -0.096 4.096 6 C -0.114 4.114 7 H 0.106 0.894 8 C -0.100 4.100 9 H 0.104 0.896 10 C -0.095 4.095 11 C -0.112 4.112 12 H 0.106 0.894 13 C -0.153 4.153 14 C -0.172 4.172 15 C 0.047 3.953 16 H 0.123 0.877 17 N -0.353 5.353 18 C 0.328 3.672 19 O -0.393 6.393 20 C -0.298 4.298 21 S 0.165 5.835 22 C -0.683 4.683 23 H 0.090 0.910 24 C -0.136 4.136 25 N -0.503 5.503 26 Si 0.745 3.255 27 H -0.203 1.203 28 H -0.208 1.208 29 H -0.197 1.197 30 C -0.003 4.003 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.051 0.949 38 H 0.099 0.901 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.106 0.894 47 H 0.106 0.894 48 H 0.078 0.922 49 H 0.089 0.911 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -25.176 -12.919 1.943 28.364 hybrid contribution 0.966 -1.440 -1.940 2.602 sum -24.210 -14.359 0.003 28.148 Atomic orbital electron populations 1.21741 0.95586 1.01785 1.01807 1.21538 0.95575 0.96293 1.02607 1.22326 0.88203 0.97365 1.00482 1.65421 1.05140 1.10656 1.42164 1.23354 0.94215 0.90623 1.01380 1.22250 0.96177 0.94513 0.98460 0.89407 1.21895 0.96424 0.96555 0.95081 0.89631 1.23366 0.93998 0.99032 0.93132 1.21464 0.94547 0.99358 0.95836 0.89355 1.21617 0.98989 0.95299 0.99428 1.22056 0.99366 0.97745 0.98058 1.21191 0.81878 0.99141 0.93135 0.87742 1.48495 1.09118 1.17784 1.59892 1.20223 0.84947 0.83590 0.78475 1.90688 1.83807 1.22156 1.42680 1.23520 0.96206 1.06600 1.03487 1.85392 1.01230 1.19192 1.77698 1.22860 0.95538 1.05728 1.44136 0.90977 1.24991 0.98625 0.94798 0.95194 1.70019 1.27293 1.11048 1.41912 0.86173 0.81062 0.79215 0.79080 1.20295 1.20751 1.19701 1.21835 0.96691 0.83821 0.97968 0.92546 0.92599 0.92884 0.92132 0.91054 0.90658 0.94853 0.90054 0.92552 0.92779 0.90378 0.91539 0.91531 0.91216 0.90814 0.89380 0.89433 0.92206 0.91057 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.42 16 2 C -0.12 -0.77 5.65 -26.73 -0.15 -0.92 16 3 C 0.04 0.32 4.93 -3.82 -0.02 0.30 16 4 N -0.51 -4.41 5.45 -229.85 -1.25 -5.66 16 5 C 0.03 0.29 5.78 -2.18 -0.01 0.28 16 6 C -0.09 -0.99 3.32 -89.21 -0.30 -1.28 16 7 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 8 C -0.08 -0.72 3.14 -89.26 -0.28 -1.00 16 9 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 10 C 0.03 0.25 4.64 -2.10 -0.01 0.24 16 11 C -0.09 -0.78 2.86 -90.26 -0.26 -1.04 16 12 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 13 C -0.12 -0.96 5.31 -26.74 -0.14 -1.10 16 14 C -0.13 -1.33 5.52 -26.60 -0.15 -1.48 16 15 C 0.15 1.85 3.10 -67.02 -0.21 1.64 16 16 H 0.10 1.50 7.23 -51.93 -0.38 1.13 16 17 N -0.62 -8.85 2.81 -163.72 -0.46 -9.31 16 18 C 0.54 10.44 7.77 -10.99 -0.09 10.35 16 19 O -0.52 -12.03 15.46 5.56 0.09 -11.94 16 20 C -0.15 -3.05 5.09 36.00 0.18 -2.87 16 21 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 22 C -0.53 -15.33 9.50 30.94 0.29 -15.03 16 23 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 24 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 25 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 26 Si 0.92 21.51 29.55 -169.99 -5.02 16.48 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 29 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 30 C 0.12 1.32 5.28 -3.15 -0.02 1.31 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.28 8.14 -51.92 -0.42 -0.14 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.06 0.38 7.23 -51.92 -0.38 0.00 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.03 0.24 7.97 -51.93 -0.41 -0.18 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.48 4.96 -51.93 -0.26 0.22 16 40 H 0.05 0.40 5.15 -51.93 -0.27 0.13 16 41 H 0.08 0.58 7.81 -51.93 -0.41 0.18 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.48 5.79 -51.93 -0.30 0.18 16 44 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 45 H 0.07 0.63 5.66 -51.93 -0.29 0.34 16 46 H 0.09 1.70 8.13 -51.91 -0.42 1.28 16 47 H 0.09 1.69 8.11 -51.92 -0.42 1.27 16 48 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 49 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 50 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 LS Contribution 385.63 15.07 5.81 5.81 Total: -1.00 -33.44 385.63 -11.76 -45.21 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -8.57 Total: -2.09 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -0.88 Total: -9.02 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: -0.98 Total: -40.54 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.09 Total: -11.94 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.44 -11.76 -45.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099432490.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.761 kcal (2) G-P(sol) polarization free energy of solvation -33.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds