Wall clock time and date at job start Tue Mar 31 2020 20:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47093 * 2 1 4 4 N 1.46904 * 109.46952 * 174.74881 * 3 2 1 5 5 C 1.48578 * 110.99636 * 174.68904 * 4 3 2 6 6 C 1.54361 * 104.61761 * 200.88432 * 5 4 3 7 7 H 1.08995 * 110.88415 * 264.34175 * 6 5 4 8 8 C 1.54139 * 105.09706 * 24.20963 * 6 5 4 9 9 H 1.08999 * 110.85953 * 239.06396 * 8 6 5 10 10 C 1.48660 * 111.11278 * 59.26604 * 4 3 2 11 11 C 1.53041 * 109.71277 * 116.36376 * 8 6 5 12 12 H 1.09003 * 109.64628 * 180.66000 * 11 8 6 13 13 C 1.53069 * 109.18695 * 300.80311 * 11 8 6 14 14 C 1.52914 * 110.02698 * 59.33879 * 13 11 8 15 15 C 1.53201 * 109.04945 * 141.47207 * 6 5 4 16 16 H 1.09003 * 110.52394 * 67.45035 * 15 6 5 17 17 N 1.47645 * 108.10778 * 189.10994 * 15 6 5 18 18 C 1.34779 * 122.03174 * 238.66819 * 17 15 6 19 19 O 1.21278 * 119.99964 * 359.97438 * 18 17 15 20 20 C 1.50696 * 119.99927 * 179.97438 * 18 17 15 21 21 S 1.81009 * 109.47073 * 179.97438 * 20 18 17 22 22 C 1.76204 * 99.99817 * 179.97438 * 21 20 18 23 23 H 1.08003 * 120.00212 * 359.97438 * 22 21 20 24 24 C 1.38801 * 119.99815 * 180.02562 * 22 21 20 25 25 N 1.31627 * 119.99676 * 359.97438 * 24 22 21 26 26 Si 1.86792 * 119.99971 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47425 * 89.99735 * 26 24 22 28 28 H 1.48499 * 109.47055 * 209.99662 * 26 24 22 29 29 H 1.48503 * 109.47253 * 329.99584 * 26 24 22 30 30 C 1.47570 * 115.93589 * 58.65890 * 17 15 6 31 31 H 1.09004 * 109.47312 * 180.02562 * 1 2 3 32 32 H 1.09011 * 109.47115 * 299.99534 * 1 2 3 33 33 H 1.09002 * 109.47984 * 59.99396 * 1 2 3 34 34 H 1.09009 * 109.46804 * 240.00903 * 2 1 3 35 35 H 1.08997 * 109.47307 * 120.00512 * 2 1 3 36 36 H 1.09002 * 109.46774 * 54.75005 * 3 2 1 37 37 H 1.08995 * 109.47063 * 294.74805 * 3 2 1 38 38 H 1.08990 * 110.43172 * 82.06915 * 5 4 3 39 39 H 1.09002 * 110.42632 * 319.69851 * 5 4 3 40 40 H 1.09002 * 110.29223 * 39.92788 * 10 4 3 41 41 H 1.09003 * 110.53219 * 277.61215 * 10 4 3 42 42 H 1.08997 * 109.37674 * 179.51515 * 13 11 8 43 43 H 1.08998 * 109.37252 * 299.28612 * 13 11 8 44 44 H 1.09011 * 109.44428 * 120.68773 * 14 13 11 45 45 H 1.08994 * 109.44998 * 240.60355 * 14 13 11 46 46 H 1.09006 * 109.47399 * 299.99086 * 20 18 17 47 47 H 1.08999 * 109.47507 * 59.99862 * 20 18 17 48 48 H 0.97000 * 119.99983 * 180.02562 * 25 24 22 49 49 H 1.09000 * 110.00028 * 240.85262 * 30 17 15 50 50 H 1.09001 * 109.99503 * 119.46820 * 30 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5035 1.4444 0.1268 5 6 4.0468 2.8217 0.0027 6 6 5.5283 2.6229 -0.3826 7 1 6.1676 2.6607 0.4994 8 6 5.5877 1.2323 -1.0448 9 1 6.2714 0.5752 -0.5072 10 6 4.1389 0.7004 -0.9924 11 6 6.0099 1.3753 -2.5089 12 1 6.0402 0.3925 -2.9793 13 6 5.0001 2.2643 -3.2390 14 6 4.9412 3.6420 -2.5780 15 6 5.9271 3.6922 -1.4046 16 1 5.9237 4.6805 -0.9448 17 7 7.2677 3.3544 -1.9228 18 6 8.3113 4.1999 -1.8106 19 8 8.1646 5.2761 -1.2710 20 6 9.6605 3.8079 -2.3556 21 16 10.8442 5.1437 -2.0541 22 6 12.2911 4.4377 -2.7704 23 1 12.2489 3.4542 -3.2147 24 6 13.4853 5.1451 -2.7625 25 7 13.5367 6.3435 -2.2205 26 14 15.0193 4.3964 -3.5211 27 1 15.0949 4.7703 -4.9563 28 1 16.2210 4.9060 -2.8129 29 1 14.9617 2.9177 -3.3972 30 6 7.3956 2.0348 -2.5708 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8901 33 1 -0.3635 0.5139 -0.8899 34 1 1.8933 -0.5137 -0.8902 35 1 1.8933 -0.5139 0.8899 36 1 1.6018 1.9827 0.8393 37 1 1.7555 1.9285 -0.9332 38 1 3.9686 3.3487 0.9535 39 1 3.5206 3.3693 -0.7793 40 1 3.6223 0.9121 -1.9286 41 1 4.1344 -0.3708 -0.7906 42 1 5.3026 2.3754 -4.2803 43 1 4.0140 1.8020 -3.1962 44 1 5.2068 4.4065 -3.3082 45 1 3.9312 3.8258 -2.2116 46 1 10.0030 2.8998 -1.8595 47 1 9.5811 3.6284 -3.4278 48 1 14.3712 6.8381 -2.2153 49 1 8.1229 1.4251 -2.0347 50 1 7.7038 2.1577 -3.6091 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099432490.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:27 Heat of formation + Delta-G solvation = -51.748869 kcal Electronic energy + Delta-G solvation = -28092.017787 eV Core-core repulsion = 24436.875878 eV Total energy + Delta-G solvation = -3655.141908 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.63399 -40.11762 -38.11407 -35.16296 -34.59695 -33.86829 -33.35913 -31.39685 -30.55865 -28.91588 -27.71208 -26.86015 -25.40349 -23.75020 -23.01169 -22.34588 -21.41730 -21.12167 -19.72299 -18.32678 -18.01759 -17.46499 -17.26958 -16.89674 -16.78502 -16.28225 -16.10183 -15.75213 -15.41030 -15.15912 -14.82832 -14.55693 -14.38801 -14.15420 -14.00935 -13.75684 -13.67917 -13.46929 -13.23839 -13.15042 -13.04207 -12.89613 -12.72797 -12.64144 -12.60844 -12.41166 -12.11247 -12.02160 -11.74256 -11.68060 -11.49389 -11.29250 -11.24303 -11.15093 -11.10700 -10.72645 -10.29028 -9.59864 -9.33743 -8.69091 -8.35455 -6.14262 1.23549 1.41944 1.44245 1.55398 1.56775 2.04756 2.26586 2.98500 3.00504 3.22235 3.38484 3.49544 3.64190 3.76281 3.93975 3.95743 4.00658 4.03693 4.14634 4.18003 4.21472 4.24466 4.34156 4.38774 4.44692 4.48882 4.55274 4.59626 4.64393 4.67600 4.71017 4.80798 4.82261 4.87229 4.90074 4.93387 5.06163 5.14033 5.21234 5.22582 5.25334 5.28589 5.30565 5.37932 5.40501 5.43751 5.56521 5.88601 6.14331 6.18781 6.34320 7.05407 7.13276 8.73880 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.031845 B = 0.002275 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.039841 B =12305.614970 C =12605.262630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.045 3.955 4 N -0.523 5.523 5 C 0.038 3.962 6 C -0.092 4.092 7 H 0.062 0.938 8 C -0.078 4.078 9 H 0.083 0.917 10 C 0.039 3.961 11 C -0.084 4.084 12 H 0.121 0.879 13 C -0.112 4.112 14 C -0.129 4.129 15 C 0.145 3.855 16 H 0.073 0.927 17 N -0.603 5.603 18 C 0.535 3.465 19 O -0.570 6.570 20 C -0.119 4.119 21 S -0.153 6.153 22 C -0.545 4.545 23 H 0.083 0.917 24 C 0.012 3.988 25 N -0.911 5.911 26 Si 1.000 3.000 27 H -0.267 1.267 28 H -0.278 1.278 29 H -0.257 1.257 30 C 0.107 3.893 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.040 0.960 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.053 0.947 45 H 0.091 0.909 46 H 0.104 0.896 47 H 0.105 0.895 48 H 0.271 0.729 49 H 0.077 0.923 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.543 -17.849 -1.222 32.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.083 4.083 4 N -0.246 5.246 5 C -0.090 4.090 6 C -0.112 4.112 7 H 0.080 0.920 8 C -0.097 4.097 9 H 0.101 0.899 10 C -0.088 4.088 11 C -0.102 4.102 12 H 0.139 0.861 13 C -0.150 4.150 14 C -0.167 4.167 15 C 0.042 3.958 16 H 0.091 0.909 17 N -0.338 5.338 18 C 0.323 3.677 19 O -0.450 6.450 20 C -0.270 4.270 21 S 0.074 5.926 22 C -0.693 4.693 23 H 0.101 0.899 24 C -0.192 4.192 25 N -0.548 5.548 26 Si 0.821 3.179 27 H -0.192 1.192 28 H -0.203 1.203 29 H -0.181 1.181 30 C -0.015 4.015 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.058 0.942 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.107 0.893 44 H 0.072 0.928 45 H 0.109 0.891 46 H 0.122 0.878 47 H 0.124 0.876 48 H 0.080 0.920 49 H 0.095 0.905 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -26.562 -16.364 0.135 31.198 hybrid contribution 1.255 -0.415 -1.324 1.871 sum -25.307 -16.779 -1.189 30.387 Atomic orbital electron populations 1.21724 0.94850 1.02195 1.01966 1.21495 0.96162 0.95464 1.02413 1.22358 0.87163 0.98103 1.00684 1.65415 1.06166 1.10057 1.42995 1.23252 0.93118 0.91321 1.01274 1.22137 0.96770 0.95213 0.97071 0.91964 1.21897 0.97557 0.95002 0.95260 0.89894 1.23354 0.92776 0.99304 0.93374 1.21486 0.92550 1.00573 0.95612 0.86123 1.21636 1.00151 0.93824 0.99343 1.22020 0.99178 0.98910 0.96545 1.21327 0.81353 0.98391 0.94756 0.90895 1.48507 1.08621 1.18161 1.58471 1.20034 0.85581 0.83657 0.78410 1.90666 1.84561 1.24473 1.45252 1.23312 0.95052 1.03873 1.04807 1.85594 1.04271 1.24167 1.78539 1.23187 0.95784 1.06155 1.44185 0.89923 1.26155 1.02476 0.95143 0.95450 1.70189 1.28402 1.12809 1.43376 0.84935 0.75904 0.78835 0.78186 1.19224 1.20273 1.18119 1.22225 0.99086 0.82006 0.98171 0.92030 0.92728 0.92465 0.91555 0.91967 0.91011 0.94182 0.90833 0.91675 0.91470 0.89423 0.90921 0.89320 0.92774 0.89108 0.87787 0.87639 0.91984 0.90463 0.90037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 71.98 0.71 -0.51 16 2 C -0.12 -1.18 5.65 30.59 0.17 -1.00 16 3 C 0.04 0.54 4.93 86.30 0.43 0.97 16 4 N -0.52 -7.92 5.45 -881.10 -4.81 -12.72 16 5 C 0.04 0.66 5.78 86.44 0.50 1.16 16 6 C -0.09 -1.89 3.32 -9.88 -0.03 -1.92 16 7 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 8 C -0.08 -1.19 3.14 -9.91 -0.03 -1.23 16 9 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 10 C 0.04 0.47 4.64 86.45 0.40 0.88 16 11 C -0.08 -1.11 2.86 -10.56 -0.03 -1.14 16 12 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 13 C -0.11 -1.45 5.31 30.59 0.16 -1.28 16 14 C -0.13 -2.35 5.52 30.68 0.17 -2.18 16 15 C 0.15 3.59 3.10 44.95 0.14 3.73 16 16 H 0.07 2.27 7.23 -2.39 -0.02 2.25 16 17 N -0.60 -17.22 2.81 -790.26 -2.22 -19.44 16 18 C 0.54 21.34 7.77 87.66 0.68 22.02 16 19 O -0.57 -28.10 15.46 -3.02 -0.05 -28.14 16 20 C -0.12 -4.98 5.09 71.23 0.36 -4.62 16 21 S -0.15 -8.73 20.57 -56.49 -1.16 -9.90 16 22 C -0.55 -31.60 9.50 67.95 0.65 -30.96 16 23 H 0.08 4.44 7.80 -2.91 -0.02 4.41 16 24 C 0.01 0.72 5.49 84.86 0.47 1.18 16 25 N -0.91 -56.67 13.22 21.65 0.29 -56.38 16 26 Si 1.00 43.92 29.55 68.60 2.03 45.95 16 27 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 28 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 29 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 30 C 0.11 2.11 5.28 86.37 0.46 2.56 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.05 0.46 8.14 -2.38 -0.02 0.44 16 33 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.07 0.60 7.23 -2.38 -0.02 0.58 16 35 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.04 0.44 7.97 -2.39 -0.02 0.42 16 38 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.07 0.99 4.96 -2.39 -0.01 0.98 16 40 H 0.07 0.66 5.15 -2.39 -0.01 0.65 16 41 H 0.09 0.96 7.81 -2.39 -0.02 0.94 16 42 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.09 0.82 5.79 -2.39 -0.01 0.81 16 44 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 45 H 0.09 1.36 5.66 -2.39 -0.01 1.34 16 46 H 0.10 3.98 8.13 -2.39 -0.02 3.96 16 47 H 0.11 3.99 8.11 -2.40 -0.02 3.97 16 48 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 49 H 0.08 1.48 8.13 -2.39 -0.02 1.46 16 50 H 0.08 1.51 8.11 -2.39 -0.02 1.49 16 Total: -1.00 -76.48 385.63 0.19 -76.29 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.91 Total: 16.69 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: 5.20 Total: -12.34 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -6.74 Total: -88.55 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -0.05 Total: -28.14 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.16 Total: -9.90 kcal Total: -76.48 0.19 -76.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099432490.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.543 kcal (2) G-P(sol) polarization free energy of solvation -76.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds