Wall clock time and date at job start Tue Mar 31 2020 22:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 119.99665 * 2 1 4 4 C 1.52996 * 109.47056 * 125.00598 * 3 2 1 5 5 C 1.53002 * 109.47416 * 186.22069 * 4 3 2 6 6 H 1.08997 * 109.47382 * 57.33204 * 5 4 3 7 7 C 1.52997 * 109.47077 * 177.33589 * 5 4 3 8 8 N 1.46902 * 109.46719 * 297.33250 * 5 4 3 9 9 C 1.50652 * 111.00220 * 86.02669 * 8 5 4 10 10 H 1.08998 * 115.87723 * 296.65426 * 9 8 5 11 11 C 1.55836 * 101.02971 * 170.95413 * 9 8 5 12 12 C 1.55868 * 103.04530 * 326.12517 * 11 9 8 13 13 C 1.50657 * 110.99783 * 194.11439 * 8 5 4 14 14 H 1.09001 * 115.87602 * 64.07150 * 13 8 5 15 15 C 1.55838 * 101.02633 * 298.37140 * 13 8 5 16 16 H 1.09004 * 110.61654 * 85.67800 * 15 13 8 17 17 N 1.46505 * 110.61077 * 208.49845 * 15 13 8 18 18 C 1.34782 * 120.00163 * 277.14127 * 17 15 13 19 19 O 1.21285 * 119.99740 * 0.02562 * 18 17 15 20 20 C 1.50695 * 120.00137 * 179.97438 * 18 17 15 21 21 S 1.80997 * 109.47070 * 180.02562 * 20 18 17 22 22 C 1.76198 * 100.00170 * 179.97438 * 21 20 18 23 23 H 1.08001 * 120.00084 * 359.97438 * 22 21 20 24 24 C 1.38804 * 120.00415 * 179.97438 * 22 21 20 25 25 N 1.31627 * 119.99361 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00212 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47029 * 90.00306 * 26 24 22 28 28 H 1.48497 * 109.47030 * 210.00429 * 26 24 22 29 29 H 1.48498 * 109.47187 * 330.00171 * 26 24 22 30 30 C 1.55845 * 101.02741 * 62.34312 * 9 8 5 31 31 H 1.07998 * 120.00304 * 359.97438 * 1 2 3 32 32 H 1.08003 * 120.00128 * 180.02562 * 1 2 3 33 33 H 1.07998 * 120.00304 * 180.02562 * 2 1 3 34 34 H 1.09003 * 109.47309 * 5.00621 * 3 2 1 35 35 H 1.08997 * 109.47266 * 245.00439 * 3 2 1 36 36 H 1.09005 * 109.47339 * 66.21922 * 4 3 2 37 37 H 1.08998 * 109.47097 * 306.21993 * 4 3 2 38 38 H 1.09007 * 109.47243 * 299.99428 * 7 5 4 39 39 H 1.08999 * 109.47680 * 59.99988 * 7 5 4 40 40 H 1.09006 * 109.46802 * 179.97438 * 7 5 4 41 41 H 1.09001 * 110.62072 * 85.51590 * 11 9 8 42 42 H 1.09006 * 110.61477 * 208.49487 * 11 9 8 43 43 H 1.08998 * 111.08682 * 242.10307 * 12 11 9 44 44 H 1.08991 * 110.18878 * 119.23946 * 12 11 9 45 45 H 0.96997 * 119.99957 * 97.14393 * 17 15 13 46 46 H 1.09000 * 109.47180 * 299.99854 * 20 18 17 47 47 H 1.08996 * 109.47081 * 59.99953 * 20 18 17 48 48 H 0.97005 * 119.99634 * 179.97438 * 25 24 22 49 49 H 1.09002 * 110.61675 * 151.50369 * 30 9 8 50 50 H 1.09001 * 110.61866 * 274.49082 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1815 5 6 3.6865 2.7144 1.2736 6 1 2.9124 3.4754 1.3718 7 6 4.6078 2.7634 2.4941 8 7 4.4708 2.9678 0.0576 9 6 3.6059 3.5459 -1.0321 10 1 2.8032 2.9033 -1.3936 11 6 4.6812 3.9388 -2.0894 12 6 5.8982 4.3628 -1.2126 13 6 5.3933 4.1440 0.2455 14 1 6.1710 4.0229 0.9996 15 6 4.3683 5.2869 0.5133 16 1 4.1023 5.3241 1.5697 17 7 4.9069 6.5763 0.0731 18 6 5.7365 7.2701 0.8774 19 8 6.0375 6.8268 1.9655 20 6 6.2909 8.5961 0.4244 21 16 7.3639 9.2740 1.7148 22 6 7.8594 10.7779 0.9420 23 1 7.4950 11.0237 -0.0445 24 6 8.7181 11.6469 1.6010 25 7 9.1626 11.3470 2.8031 26 14 9.2439 13.2409 0.7814 27 1 8.2842 14.3182 1.1328 28 1 10.6019 13.6148 1.2517 29 1 9.2637 13.0568 -0.6920 30 6 3.1521 4.8838 -0.3742 31 1 -0.5400 0.9353 0.0004 32 1 -0.5400 -0.9353 0.0004 33 1 1.8500 -0.9353 -0.0004 34 1 1.3584 2.1317 0.0897 35 1 2.6211 1.4027 -0.9314 36 1 3.8062 0.5766 1.0358 37 1 2.4919 1.1254 2.1035 38 1 4.0258 2.5754 3.3964 39 1 5.3819 2.0024 2.3959 40 1 5.0723 3.7474 2.5594 41 1 4.9227 3.0875 -2.7259 42 1 4.3397 4.7827 -2.6888 43 1 6.1542 5.4094 -1.3770 44 1 6.7545 3.7219 -1.4225 45 1 4.6664 6.9306 -0.7972 46 1 6.8673 8.4556 -0.4900 47 1 5.4699 9.2872 0.2338 48 1 9.7630 11.9541 3.2635 49 1 2.9551 5.6385 -1.1357 50 1 2.2713 4.7262 0.2482 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108952413.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:28 Heat of formation + Delta-G solvation = 6.828850 kcal Electronic energy + Delta-G solvation = -27786.210950 eV Core-core repulsion = 24133.609162 eV Total energy + Delta-G solvation = -3652.601788 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.57381 -38.78358 -36.57413 -34.34535 -33.61727 -32.43852 -30.51430 -30.36610 -29.58487 -28.28903 -27.43631 -25.47778 -24.28026 -22.36628 -21.64667 -20.66388 -20.46328 -19.50284 -19.04611 -17.86180 -17.17882 -16.55475 -15.98076 -15.85809 -15.26856 -14.90510 -14.81279 -14.65454 -14.29184 -13.95359 -13.64965 -13.31082 -13.23273 -13.07619 -12.90861 -12.70037 -12.48630 -12.41533 -12.04709 -11.93681 -11.84153 -11.74390 -11.48333 -11.32566 -11.07982 -11.07365 -11.03435 -10.92923 -10.82053 -10.76668 -10.51536 -10.34802 -9.82626 -9.57456 -9.44213 -9.21792 -9.07395 -8.43278 -8.24782 -6.50931 -6.22752 -3.93187 1.97003 3.01132 3.06378 3.21428 3.26910 3.30727 3.58173 3.79312 4.19416 4.28928 4.36010 4.42657 4.60228 4.69280 4.79195 4.86863 4.90379 4.98227 5.08553 5.12466 5.13795 5.14912 5.18419 5.21428 5.30950 5.37224 5.37286 5.48289 5.55707 5.60459 5.61077 5.65878 5.70188 5.85681 5.87343 5.88370 5.93032 5.97546 6.00651 6.06013 6.12276 6.13636 6.18130 6.32568 6.43738 6.46970 6.68644 6.89749 7.58500 7.68831 8.34097 8.59984 9.22662 10.84639 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.029429 B = 0.002190 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.217692 B =12783.481345 C =13158.186104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.149 4.149 3 C -0.101 4.101 4 C -0.099 4.099 5 C 0.055 3.945 6 H 0.054 0.946 7 C -0.157 4.157 8 N -0.482 5.482 9 C 0.035 3.965 10 H 0.122 0.878 11 C -0.114 4.114 12 C -0.116 4.116 13 C 0.040 3.960 14 H 0.119 0.881 15 C 0.120 3.880 16 H 0.091 0.909 17 N -0.727 5.727 18 C 0.532 3.468 19 O -0.516 6.516 20 C -0.154 4.154 21 S -0.059 6.059 22 C -0.536 4.536 23 H 0.072 0.928 24 C 0.073 3.927 25 N -0.867 5.867 26 Si 0.918 3.082 27 H -0.277 1.277 28 H -0.282 1.282 29 H -0.272 1.272 30 C -0.159 4.159 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.397 0.603 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.268 0.732 49 H 0.079 0.921 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.801 -20.531 -9.562 27.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.167 4.167 3 C -0.138 4.138 4 C -0.137 4.137 5 C -0.054 4.054 6 H 0.072 0.928 7 C -0.215 4.215 8 N -0.206 5.206 9 C -0.073 4.073 10 H 0.140 0.860 11 C -0.152 4.152 12 C -0.154 4.154 13 C -0.069 4.069 14 H 0.136 0.864 15 C 0.013 3.987 16 H 0.109 0.891 17 N -0.381 5.381 18 C 0.318 3.682 19 O -0.390 6.390 20 C -0.304 4.304 21 S 0.168 5.832 22 C -0.684 4.684 23 H 0.090 0.910 24 C -0.136 4.136 25 N -0.503 5.503 26 Si 0.745 3.255 27 H -0.203 1.203 28 H -0.207 1.207 29 H -0.197 1.197 30 C -0.198 4.198 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.125 0.875 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.232 0.768 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.078 0.922 49 H 0.098 0.902 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.897 -21.799 -7.686 27.499 hybrid contribution -0.644 2.494 -1.864 3.180 sum -15.542 -19.305 -9.550 26.560 Atomic orbital electron populations 1.23831 0.96030 1.01663 1.02383 1.23034 0.95953 0.98804 0.98881 1.21073 0.97912 0.94806 1.00000 1.21490 0.97787 0.96782 0.97594 1.21968 0.95610 0.97045 0.90736 0.92781 1.22035 0.99841 1.03202 0.96392 1.67786 1.13412 1.33810 1.05582 1.24789 0.95900 0.93038 0.93615 0.86004 1.22776 0.95121 1.00660 0.96594 1.22732 0.97703 1.01638 0.93330 1.24807 0.95964 0.87981 0.98167 0.86352 1.22851 0.93034 0.83776 0.99086 0.89097 1.46082 1.50185 1.21046 1.20819 1.20319 0.77745 0.85670 0.84429 1.90694 1.57552 1.69591 1.21143 1.23531 1.04251 0.96150 1.06507 1.85389 1.55556 1.22598 1.19688 1.22867 1.34030 1.05981 1.05531 0.90965 1.24992 0.95221 0.98478 0.94899 1.70018 1.31352 1.36748 1.12137 0.86170 0.78021 0.81944 0.79384 1.20288 1.20734 1.19701 1.23671 0.97612 0.98936 0.99589 0.88759 0.88769 0.87542 0.91997 0.89773 0.91093 0.91810 0.92267 0.91888 0.91400 0.91063 0.91612 0.90694 0.91319 0.76848 0.89287 0.89368 0.92184 0.90207 0.90673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.32 14.32 29.02 0.42 -0.91 16 2 C -0.15 -1.02 9.52 -36.03 -0.34 -1.37 16 3 C -0.10 -0.70 4.16 -27.89 -0.12 -0.82 16 4 C -0.10 -0.77 4.89 -26.73 -0.13 -0.90 16 5 C 0.06 0.50 1.74 -67.71 -0.12 0.38 16 6 H 0.05 0.50 5.22 -51.93 -0.27 0.23 16 7 C -0.16 -1.60 8.49 37.16 0.32 -1.28 16 8 N -0.48 -4.58 5.31 -197.82 -1.05 -5.63 16 9 C 0.03 0.27 3.96 -62.57 -0.25 0.03 16 10 H 0.12 0.83 5.04 -51.93 -0.26 0.56 16 11 C -0.11 -0.92 6.53 -23.69 -0.15 -1.08 16 12 C -0.12 -1.20 6.36 -23.68 -0.15 -1.36 16 13 C 0.04 0.46 3.69 -62.56 -0.23 0.23 16 14 H 0.12 1.62 6.92 -51.93 -0.36 1.26 16 15 C 0.12 1.38 2.18 -64.88 -0.14 1.23 16 16 H 0.09 1.25 6.48 -51.93 -0.34 0.91 16 17 N -0.73 -9.28 3.63 -50.87 -0.18 -9.46 16 18 C 0.53 9.56 7.82 -10.99 -0.09 9.48 16 19 O -0.52 -11.28 15.64 5.55 0.09 -11.20 16 20 C -0.15 -3.04 6.16 36.00 0.22 -2.82 16 21 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 22 C -0.54 -15.19 9.50 30.94 0.29 -14.89 16 23 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 24 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 25 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16 26 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 30 C -0.16 -1.34 5.41 -23.68 -0.13 -1.47 16 31 H 0.09 0.58 7.84 -52.49 -0.41 0.17 16 32 H 0.09 0.53 8.06 -52.48 -0.42 0.11 16 33 H 0.11 0.69 8.06 -52.49 -0.42 0.26 16 34 H 0.06 0.42 7.75 -51.93 -0.40 0.02 16 35 H 0.08 0.60 5.65 -51.93 -0.29 0.31 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.83 5.52 -51.93 -0.29 0.55 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.47 7.85 -51.93 -0.41 0.06 16 43 H 0.07 0.83 6.62 -51.93 -0.34 0.49 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.40 4.02 8.09 -40.82 -0.33 3.69 16 46 H 0.09 1.63 8.14 -51.91 -0.42 1.20 16 47 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 48 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 49 H 0.08 0.60 7.35 -51.93 -0.38 0.22 16 50 H 0.07 0.61 6.90 -51.93 -0.36 0.25 16 LS Contribution 394.03 15.07 5.94 5.94 Total: -1.00 -32.58 394.03 -10.62 -43.20 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -8.22 Total: 3.51 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -0.70 Total: -13.55 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: -0.50 Total: -40.44 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.09 Total: -11.20 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.58 -10.62 -43.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108952413.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.030 kcal (2) G-P(sol) polarization free energy of solvation -32.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds