Wall clock time and date at job start Tue Mar 31 2020 22:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50697 * 119.99665 * 2 1 4 4 C 1.52996 * 109.47056 * 125.00598 * 3 2 1 5 5 C 1.53002 * 109.47416 * 186.22069 * 4 3 2 6 6 H 1.08997 * 109.47382 * 57.33204 * 5 4 3 7 7 C 1.52997 * 109.47077 * 177.33589 * 5 4 3 8 8 N 1.46902 * 109.46719 * 297.33250 * 5 4 3 9 9 C 1.50652 * 111.00220 * 86.02669 * 8 5 4 10 10 H 1.08998 * 115.87723 * 296.65426 * 9 8 5 11 11 C 1.55836 * 101.02971 * 170.95413 * 9 8 5 12 12 C 1.55868 * 103.04530 * 326.12517 * 11 9 8 13 13 C 1.50657 * 110.99783 * 194.11439 * 8 5 4 14 14 H 1.09001 * 115.87602 * 64.07150 * 13 8 5 15 15 C 1.55838 * 101.02633 * 298.37140 * 13 8 5 16 16 H 1.09004 * 110.61654 * 85.67800 * 15 13 8 17 17 N 1.46505 * 110.61077 * 208.49845 * 15 13 8 18 18 C 1.34782 * 120.00163 * 277.14127 * 17 15 13 19 19 O 1.21285 * 119.99740 * 0.02562 * 18 17 15 20 20 C 1.50695 * 120.00137 * 179.97438 * 18 17 15 21 21 S 1.80997 * 109.47070 * 180.02562 * 20 18 17 22 22 C 1.76198 * 100.00170 * 179.97438 * 21 20 18 23 23 H 1.08001 * 120.00084 * 359.97438 * 22 21 20 24 24 C 1.38804 * 120.00415 * 179.97438 * 22 21 20 25 25 N 1.31627 * 119.99361 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00212 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47029 * 90.00306 * 26 24 22 28 28 H 1.48497 * 109.47030 * 210.00429 * 26 24 22 29 29 H 1.48498 * 109.47187 * 330.00171 * 26 24 22 30 30 C 1.55845 * 101.02741 * 62.34312 * 9 8 5 31 31 H 1.07998 * 120.00304 * 359.97438 * 1 2 3 32 32 H 1.08003 * 120.00128 * 180.02562 * 1 2 3 33 33 H 1.07998 * 120.00304 * 180.02562 * 2 1 3 34 34 H 1.09003 * 109.47309 * 5.00621 * 3 2 1 35 35 H 1.08997 * 109.47266 * 245.00439 * 3 2 1 36 36 H 1.09005 * 109.47339 * 66.21922 * 4 3 2 37 37 H 1.08998 * 109.47097 * 306.21993 * 4 3 2 38 38 H 1.09007 * 109.47243 * 299.99428 * 7 5 4 39 39 H 1.08999 * 109.47680 * 59.99988 * 7 5 4 40 40 H 1.09006 * 109.46802 * 179.97438 * 7 5 4 41 41 H 1.09001 * 110.62072 * 85.51590 * 11 9 8 42 42 H 1.09006 * 110.61477 * 208.49487 * 11 9 8 43 43 H 1.08998 * 111.08682 * 242.10307 * 12 11 9 44 44 H 1.08991 * 110.18878 * 119.23946 * 12 11 9 45 45 H 0.96997 * 119.99957 * 97.14393 * 17 15 13 46 46 H 1.09000 * 109.47180 * 299.99854 * 20 18 17 47 47 H 1.08996 * 109.47081 * 59.99953 * 20 18 17 48 48 H 0.97005 * 119.99634 * 179.97438 * 25 24 22 49 49 H 1.09002 * 110.61675 * 151.50369 * 30 9 8 50 50 H 1.09001 * 110.61866 * 274.49082 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1815 5 6 3.6865 2.7144 1.2736 6 1 2.9124 3.4754 1.3718 7 6 4.6078 2.7634 2.4941 8 7 4.4708 2.9678 0.0576 9 6 3.6059 3.5459 -1.0321 10 1 2.8032 2.9033 -1.3936 11 6 4.6812 3.9388 -2.0894 12 6 5.8982 4.3628 -1.2126 13 6 5.3933 4.1440 0.2455 14 1 6.1710 4.0229 0.9996 15 6 4.3683 5.2869 0.5133 16 1 4.1023 5.3241 1.5697 17 7 4.9069 6.5763 0.0731 18 6 5.7365 7.2701 0.8774 19 8 6.0375 6.8268 1.9655 20 6 6.2909 8.5961 0.4244 21 16 7.3639 9.2740 1.7148 22 6 7.8594 10.7779 0.9420 23 1 7.4950 11.0237 -0.0445 24 6 8.7181 11.6469 1.6010 25 7 9.1626 11.3470 2.8031 26 14 9.2439 13.2409 0.7814 27 1 8.2842 14.3182 1.1328 28 1 10.6019 13.6148 1.2517 29 1 9.2637 13.0568 -0.6920 30 6 3.1521 4.8838 -0.3742 31 1 -0.5400 0.9353 0.0004 32 1 -0.5400 -0.9353 0.0004 33 1 1.8500 -0.9353 -0.0004 34 1 1.3584 2.1317 0.0897 35 1 2.6211 1.4027 -0.9314 36 1 3.8062 0.5766 1.0358 37 1 2.4919 1.1254 2.1035 38 1 4.0258 2.5754 3.3964 39 1 5.3819 2.0024 2.3959 40 1 5.0723 3.7474 2.5594 41 1 4.9227 3.0875 -2.7259 42 1 4.3397 4.7827 -2.6888 43 1 6.1542 5.4094 -1.3770 44 1 6.7545 3.7219 -1.4225 45 1 4.6664 6.9306 -0.7972 46 1 6.8673 8.4556 -0.4900 47 1 5.4699 9.2872 0.2338 48 1 9.7630 11.9541 3.2635 49 1 2.9551 5.6385 -1.1357 50 1 2.2713 4.7262 0.2482 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108952413.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:28 Heat of formation + Delta-G solvation = -13.874311 kcal Electronic energy + Delta-G solvation = -27787.108707 eV Core-core repulsion = 24133.609162 eV Total energy + Delta-G solvation = -3653.499544 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.43659 -40.16131 -37.27101 -35.30216 -34.59637 -34.52161 -31.61330 -31.10496 -30.62072 -29.08079 -28.51707 -27.61716 -24.96193 -23.21959 -22.47228 -21.85979 -21.12540 -20.20561 -19.95495 -19.77318 -18.05808 -17.86882 -17.04884 -16.90080 -16.88131 -16.16111 -15.98881 -15.88098 -15.38998 -14.96184 -14.70372 -14.50669 -14.35480 -14.03131 -13.92908 -13.61914 -13.54378 -13.36421 -13.17093 -13.13462 -12.89728 -12.76354 -12.65372 -12.57725 -12.41719 -12.20853 -12.07624 -11.80883 -11.72919 -11.62759 -11.59483 -11.17742 -11.17519 -11.14832 -10.94019 -10.29566 -10.27471 -10.07628 -9.34624 -8.66867 -8.35276 -6.13102 1.26509 1.41788 1.46583 1.47691 1.56937 1.61235 2.24377 2.28548 2.89266 2.98915 3.31623 3.48426 3.59752 3.73899 3.88105 3.93149 3.96965 4.14382 4.17026 4.22469 4.26038 4.30034 4.37861 4.40567 4.45409 4.49728 4.53509 4.58654 4.62823 4.69639 4.79263 4.84274 4.88359 4.99473 5.04169 5.08227 5.14006 5.16573 5.20458 5.28964 5.32146 5.34962 5.41215 5.44377 5.48324 5.75083 5.83417 5.96713 6.13083 6.19149 6.50377 7.06083 7.25623 8.73861 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.029429 B = 0.002190 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.217692 B =12783.481345 C =13158.186104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.159 4.159 3 C -0.095 4.095 4 C -0.092 4.092 5 C 0.058 3.942 6 H 0.056 0.944 7 C -0.154 4.154 8 N -0.483 5.483 9 C 0.042 3.958 10 H 0.144 0.856 11 C -0.107 4.107 12 C -0.117 4.117 13 C 0.035 3.965 14 H 0.085 0.915 15 C 0.118 3.882 16 H 0.065 0.935 17 N -0.699 5.699 18 C 0.534 3.466 19 O -0.563 6.563 20 C -0.129 4.129 21 S -0.151 6.151 22 C -0.546 4.546 23 H 0.083 0.917 24 C 0.013 3.987 25 N -0.911 5.911 26 Si 0.998 3.002 27 H -0.268 1.268 28 H -0.278 1.278 29 H -0.258 1.258 30 C -0.149 4.149 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.039 0.961 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.067 0.933 44 H 0.060 0.940 45 H 0.415 0.585 46 H 0.109 0.891 47 H 0.108 0.892 48 H 0.271 0.729 49 H 0.100 0.900 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.970 -20.587 -12.693 30.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.177 4.177 3 C -0.132 4.132 4 C -0.130 4.130 5 C -0.051 4.051 6 H 0.074 0.926 7 C -0.211 4.211 8 N -0.207 5.207 9 C -0.066 4.066 10 H 0.161 0.839 11 C -0.144 4.144 12 C -0.155 4.155 13 C -0.074 4.074 14 H 0.103 0.897 15 C 0.011 3.989 16 H 0.083 0.917 17 N -0.354 5.354 18 C 0.320 3.680 19 O -0.441 6.441 20 C -0.280 4.280 21 S 0.077 5.923 22 C -0.694 4.694 23 H 0.101 0.899 24 C -0.192 4.192 25 N -0.548 5.548 26 Si 0.820 3.180 27 H -0.193 1.193 28 H -0.203 1.203 29 H -0.181 1.181 30 C -0.188 4.188 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.126 0.874 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.058 0.942 41 H 0.097 0.903 42 H 0.104 0.896 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.253 0.747 46 H 0.127 0.873 47 H 0.126 0.874 48 H 0.080 0.920 49 H 0.119 0.881 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.107 -21.880 -10.869 29.825 hybrid contribution -0.030 2.380 -0.884 2.539 sum -17.137 -19.500 -11.753 28.497 Atomic orbital electron populations 1.23977 0.96016 1.02285 1.01581 1.23071 0.96174 0.98837 0.99588 1.21007 0.97657 0.95178 0.99328 1.21411 0.97771 0.95384 0.98411 1.21965 0.95130 0.98032 0.89954 0.92624 1.21985 1.00040 1.01329 0.97775 1.67804 1.13821 1.32880 1.06200 1.24926 0.96071 0.92841 0.92731 0.83854 1.22792 0.93635 1.01715 0.96305 1.22722 0.98771 1.01068 0.92976 1.24614 0.95788 0.88914 0.98127 0.89728 1.22940 0.94594 0.82781 0.98598 0.91688 1.45806 1.48058 1.20871 1.20619 1.20058 0.78297 0.85354 0.84254 1.90691 1.59554 1.70512 1.23328 1.23365 1.03446 0.97112 1.04112 1.85586 1.58283 1.23902 1.24577 1.23205 1.34201 1.06083 1.05896 0.89917 1.26133 0.95061 1.02565 0.95455 1.70187 1.32217 1.38385 1.13984 0.84955 0.77592 0.76681 0.78772 1.19315 1.20337 1.18144 1.23660 0.95967 0.99671 0.99505 0.88323 0.88076 0.87397 0.91392 0.89617 0.91773 0.91557 0.91470 0.92377 0.94166 0.90291 0.89648 0.91419 0.92129 0.74724 0.87321 0.87369 0.92025 0.88130 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.18 14.32 67.78 0.97 -1.20 16 2 C -0.16 -1.84 9.52 25.65 0.24 -1.60 16 3 C -0.09 -1.08 4.16 29.85 0.12 -0.96 16 4 C -0.09 -1.31 4.89 30.59 0.15 -1.16 16 5 C 0.06 1.01 1.74 44.91 0.08 1.09 16 6 H 0.06 0.97 5.22 -2.39 -0.01 0.96 16 7 C -0.15 -3.31 8.49 71.98 0.61 -2.70 16 8 N -0.48 -8.70 5.31 -779.76 -4.14 -12.84 16 9 C 0.04 0.53 3.96 46.14 0.18 0.72 16 10 H 0.14 1.33 5.04 -2.39 -0.01 1.32 16 11 C -0.11 -1.39 6.53 32.57 0.21 -1.18 16 12 C -0.12 -2.31 6.36 32.57 0.21 -2.10 16 13 C 0.04 0.82 3.69 46.14 0.17 0.99 16 14 H 0.08 2.54 6.92 -2.39 -0.02 2.52 16 15 C 0.12 2.64 2.18 46.96 0.10 2.74 16 16 H 0.06 1.85 6.48 -2.38 -0.02 1.83 16 17 N -0.70 -17.05 3.63 -433.24 -1.57 -18.62 16 18 C 0.53 19.36 7.82 87.65 0.69 20.05 16 19 O -0.56 -25.86 15.64 -3.05 -0.05 -25.91 16 20 C -0.13 -5.05 6.16 71.23 0.44 -4.61 16 21 S -0.15 -8.36 20.57 -56.49 -1.16 -9.52 16 22 C -0.55 -31.14 9.50 67.96 0.65 -30.50 16 23 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 24 C 0.01 0.72 5.49 84.86 0.47 1.18 16 25 N -0.91 -56.15 13.22 21.65 0.29 -55.86 16 26 Si 1.00 43.57 29.55 68.60 2.03 45.60 16 27 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 28 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 29 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 30 C -0.15 -2.06 5.41 32.57 0.18 -1.89 16 31 H 0.10 0.97 7.84 -2.91 -0.02 0.94 16 32 H 0.10 0.93 8.06 -2.91 -0.02 0.91 16 33 H 0.11 1.20 8.06 -2.91 -0.02 1.18 16 34 H 0.07 0.71 7.75 -2.39 -0.02 0.69 16 35 H 0.09 0.96 5.65 -2.39 -0.01 0.94 16 36 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 38 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 39 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.04 1.09 5.52 -2.38 -0.01 1.07 16 41 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.08 0.83 7.85 -2.38 -0.02 0.81 16 43 H 0.07 1.41 6.62 -2.39 -0.02 1.39 16 44 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.41 7.21 8.09 -92.71 -0.75 6.46 16 46 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 47 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 48 H 0.27 15.49 8.31 -92.70 -0.77 14.72 16 49 H 0.10 1.04 7.35 -2.39 -0.02 1.02 16 50 H 0.08 1.09 6.90 -2.39 -0.02 1.08 16 Total: -1.00 -74.39 394.03 1.04 -73.35 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.18 Total: 24.94 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: 5.46 Total: -21.13 kcal Atomic # 7 Polarization: -81.90 SS G_CDS: -5.42 Total: -87.32 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.05 Total: -25.91 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.52 kcal Total: -74.39 1.04 -73.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108952413.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.476 kcal (2) G-P(sol) polarization free energy of solvation -74.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds