Wall clock time and date at job start Tue Mar 31 2020 22:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50706 * 119.99930 * 2 1 4 4 C 1.53002 * 109.46830 * 125.00055 * 3 2 1 5 5 C 1.52999 * 109.46796 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47577 * 33.73798 * 5 4 3 7 7 C 1.52995 * 109.47372 * 153.74052 * 5 4 3 8 8 N 1.46907 * 109.47002 * 273.73780 * 5 4 3 9 9 C 1.50646 * 110.99748 * 70.33932 * 8 5 4 10 10 H 1.09000 * 115.88352 * 295.93193 * 9 8 5 11 11 C 1.55850 * 101.02647 * 170.23890 * 9 8 5 12 12 C 1.54836 * 103.52175 * 327.00848 * 11 9 8 13 13 C 1.50646 * 110.99971 * 178.43238 * 8 5 4 14 14 H 1.08999 * 115.88225 * 63.35023 * 13 8 5 15 15 C 1.55847 * 101.02981 * 297.64942 * 13 8 5 16 16 H 1.08995 * 110.61387 * 208.34134 * 15 13 8 17 17 N 1.46503 * 110.61253 * 85.51551 * 15 13 8 18 18 C 1.34772 * 120.00240 * 162.92937 * 17 15 13 19 19 O 1.21283 * 119.99853 * 359.72636 * 18 17 15 20 20 C 1.50702 * 120.00206 * 180.02562 * 18 17 15 21 21 S 1.80991 * 109.47292 * 180.02562 * 20 18 17 22 22 C 1.76203 * 100.00110 * 180.02562 * 21 20 18 23 23 H 1.07997 * 119.99793 * 359.97438 * 22 21 20 24 24 C 1.38796 * 119.99886 * 180.02562 * 22 21 20 25 25 N 1.31630 * 120.00233 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99967 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47163 * 59.99983 * 26 24 22 28 28 H 1.48499 * 109.47344 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.47463 * 300.00068 * 26 24 22 30 30 C 1.54837 * 103.65812 * 326.93391 * 15 13 8 31 31 H 1.08003 * 120.00142 * 179.97438 * 1 2 3 32 32 H 1.08004 * 119.99723 * 359.97438 * 1 2 3 33 33 H 1.08002 * 120.00243 * 180.02562 * 2 1 3 34 34 H 1.08994 * 109.47272 * 4.99834 * 3 2 1 35 35 H 1.08999 * 109.46855 * 244.99363 * 3 2 1 36 36 H 1.08997 * 109.47397 * 60.04636 * 4 3 2 37 37 H 1.08995 * 109.47187 * 300.03792 * 4 3 2 38 38 H 1.08999 * 109.47657 * 179.97438 * 7 5 4 39 39 H 1.09002 * 109.47335 * 299.99940 * 7 5 4 40 40 H 1.09003 * 109.47651 * 59.99639 * 7 5 4 41 41 H 1.09007 * 110.61285 * 85.51254 * 11 9 8 42 42 H 1.09005 * 110.61576 * 208.34171 * 11 9 8 43 43 H 1.08997 * 110.61636 * 241.49321 * 12 11 9 44 44 H 1.08991 * 110.61561 * 118.50331 * 12 11 9 45 45 H 0.97006 * 119.99705 * 342.93222 * 17 15 13 46 46 H 1.09000 * 109.47103 * 300.00007 * 20 18 17 47 47 H 1.09009 * 109.46773 * 59.99705 * 20 18 17 48 48 H 0.97001 * 120.00324 * 179.97438 * 25 24 22 49 49 H 1.08994 * 110.61267 * 118.58479 * 30 15 13 50 50 H 1.09006 * 110.60870 * 241.56866 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.7995 2.6584 1.1820 6 1 3.1516 3.4518 0.8096 7 6 4.2443 2.9902 2.6078 8 7 4.9800 2.5429 0.3152 9 6 4.5795 2.4670 -1.1350 10 1 3.9967 1.5919 -1.4226 11 6 5.9645 2.6127 -1.8347 12 6 6.7528 3.5485 -0.8859 13 6 5.7387 3.8432 0.2603 14 1 6.1656 4.1852 1.2031 15 6 4.6718 4.7843 -0.3760 16 1 5.1526 5.5862 -0.9362 17 7 3.7892 5.3352 0.6554 18 6 3.0318 6.4171 0.3867 19 8 3.0845 6.9376 -0.7075 20 6 2.1243 6.9841 1.4478 21 16 1.2464 8.4217 0.7857 22 6 0.2878 8.8704 2.1945 23 1 0.3648 8.2953 3.1054 24 6 -0.5668 9.9623 2.1332 25 7 -0.6610 10.6629 1.0228 26 14 -1.5835 10.4376 3.6264 27 1 -0.6789 10.7533 4.7611 28 1 -2.4080 11.6300 3.3048 29 1 -2.4714 9.3077 4.0009 30 6 3.8826 3.8518 -1.3273 31 1 -0.5400 -0.9353 -0.0004 32 1 -0.5400 0.9354 0.0004 33 1 1.8500 -0.9353 -0.0004 34 1 1.3586 2.1317 0.0895 35 1 2.6213 1.4026 -0.9313 36 1 3.7404 0.5071 1.0917 37 1 2.4773 1.2349 2.1129 38 1 4.7893 3.9342 2.6080 39 1 3.3684 3.0759 3.2510 40 1 4.8923 2.1969 2.9803 41 1 6.4576 1.6439 -1.9151 42 1 5.8512 3.0672 -2.8190 43 1 7.0306 4.4694 -1.3987 44 1 7.6365 3.0437 -0.4960 45 1 3.7500 4.9213 1.5319 46 1 1.4023 6.2261 1.7515 47 1 2.7185 7.2862 2.3104 48 1 -1.2586 11.4258 0.9798 49 1 2.8349 3.7995 -1.0315 50 1 3.9746 4.1899 -2.3595 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110301088.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:36 Heat of formation + Delta-G solvation = 13.888482 kcal Electronic energy + Delta-G solvation = -28355.129808 eV Core-core repulsion = 24702.834148 eV Total energy + Delta-G solvation = -3652.295659 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.77300 -38.71776 -36.53009 -34.43833 -33.78278 -32.44306 -30.48747 -30.28190 -29.55307 -28.34954 -27.60586 -25.48570 -24.22718 -22.42118 -21.67185 -20.79558 -19.93170 -19.81668 -19.21658 -17.87423 -17.33883 -16.51525 -16.28675 -15.54340 -14.90537 -14.85057 -14.81058 -14.52892 -14.20470 -14.12005 -13.90042 -13.44351 -13.33389 -13.08571 -12.89301 -12.59683 -12.56308 -12.51188 -12.16226 -11.85886 -11.77123 -11.49585 -11.44240 -11.29981 -11.24997 -11.09878 -11.05893 -11.04975 -10.80399 -10.76396 -10.57959 -10.44125 -9.83854 -9.46100 -9.39803 -9.07784 -8.93918 -8.69055 -8.26106 -6.51824 -6.22955 -3.93827 2.08883 3.00036 3.04772 3.22376 3.26364 3.29606 3.54198 3.67897 4.19137 4.32344 4.37704 4.44818 4.55836 4.76569 4.82541 4.84108 4.93564 4.97732 5.03683 5.09845 5.12110 5.14961 5.20676 5.25428 5.30038 5.32904 5.42754 5.47807 5.54514 5.60899 5.64433 5.69143 5.73803 5.77704 5.81786 5.84782 5.90024 5.95372 5.96870 6.02632 6.04556 6.10314 6.17989 6.42489 6.45020 6.58547 6.63438 6.84181 7.57708 7.65197 8.33517 8.58096 9.22225 10.84399 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012057 B = 0.003063 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.712412 B = 9139.581274 C =10350.037052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.153 4.153 3 C -0.110 4.110 4 C -0.103 4.103 5 C 0.033 3.967 6 H 0.076 0.924 7 C -0.155 4.155 8 N -0.482 5.482 9 C 0.038 3.962 10 H 0.122 0.878 11 C -0.116 4.116 12 C -0.110 4.110 13 C 0.038 3.962 14 H 0.118 0.882 15 C 0.117 3.883 16 H 0.094 0.906 17 N -0.737 5.737 18 C 0.529 3.471 19 O -0.514 6.514 20 C -0.155 4.155 21 S -0.058 6.058 22 C -0.537 4.537 23 H 0.072 0.928 24 C 0.074 3.926 25 N -0.868 5.868 26 Si 0.918 3.082 27 H -0.274 1.274 28 H -0.283 1.283 29 H -0.274 1.274 30 C -0.161 4.161 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.399 0.601 46 H 0.087 0.913 47 H 0.089 0.911 48 H 0.269 0.731 49 H 0.075 0.925 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.424 -22.144 -1.030 25.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.171 4.171 3 C -0.147 4.147 4 C -0.140 4.140 5 C -0.075 4.075 6 H 0.094 0.906 7 C -0.213 4.213 8 N -0.205 5.205 9 C -0.070 4.070 10 H 0.140 0.860 11 C -0.154 4.154 12 C -0.149 4.149 13 C -0.071 4.071 14 H 0.136 0.864 15 C 0.010 3.990 16 H 0.112 0.888 17 N -0.395 5.395 18 C 0.315 3.685 19 O -0.388 6.388 20 C -0.305 4.305 21 S 0.169 5.831 22 C -0.685 4.685 23 H 0.090 0.910 24 C -0.135 4.135 25 N -0.503 5.503 26 Si 0.744 3.256 27 H -0.199 1.199 28 H -0.208 1.208 29 H -0.199 1.199 30 C -0.201 4.201 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.124 0.876 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.238 0.762 46 H 0.106 0.894 47 H 0.107 0.893 48 H 0.079 0.921 49 H 0.094 0.906 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 12.732 -21.621 -2.689 25.235 hybrid contribution -1.389 0.250 2.414 2.796 sum 11.344 -21.371 -0.275 24.196 Atomic orbital electron populations 1.23896 0.96081 1.01883 1.01469 1.22952 0.95974 0.98423 0.99714 1.21208 0.98425 0.95424 0.99639 1.21532 0.97179 0.97173 0.98150 1.22378 0.92667 0.98627 0.93870 0.90647 1.21989 1.01990 1.01726 0.95548 1.67842 1.18173 1.29633 1.04884 1.24791 0.96008 0.97007 0.89164 0.86026 1.22640 0.94878 0.99926 0.97985 1.22517 0.97471 0.99668 0.95229 1.24740 0.94663 0.88864 0.98837 0.86446 1.22689 0.90461 0.96161 0.89650 0.88842 1.46636 1.44839 1.31608 1.16434 1.20382 0.79951 0.79072 0.89059 1.90696 1.65132 1.58836 1.24088 1.23549 1.01137 1.05214 1.00635 1.85384 1.50219 1.27860 1.19637 1.22828 1.28704 1.17503 0.99485 0.91003 1.24982 0.96359 0.95200 0.96953 1.70005 1.36390 1.18001 1.25892 0.86233 0.79649 0.78064 0.81615 1.19919 1.20785 1.19922 1.23808 1.00428 0.95107 1.00796 0.88712 0.88477 0.87610 0.91522 0.90041 0.90880 0.91393 0.92602 0.91668 0.91362 0.91150 0.91137 0.90975 0.90715 0.76237 0.89421 0.89313 0.92111 0.90644 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.73 14.32 29.02 0.42 -1.31 16 2 C -0.15 -1.31 9.52 -36.02 -0.34 -1.65 16 3 C -0.11 -0.99 4.87 -27.88 -0.14 -1.12 16 4 C -0.10 -0.88 4.81 -26.73 -0.13 -1.01 16 5 C 0.03 0.31 1.48 -67.71 -0.10 0.21 16 6 H 0.08 0.82 3.33 -51.93 -0.17 0.65 16 7 C -0.15 -1.29 8.01 37.16 0.30 -0.99 16 8 N -0.48 -4.31 5.34 -197.58 -1.05 -5.37 16 9 C 0.04 0.34 3.80 -62.36 -0.24 0.10 16 10 H 0.12 0.99 5.41 -51.93 -0.28 0.71 16 11 C -0.12 -0.90 6.43 -24.24 -0.16 -1.06 16 12 C -0.11 -0.88 6.44 -24.24 -0.16 -1.04 16 13 C 0.04 0.35 3.97 -62.56 -0.25 0.10 16 14 H 0.12 1.03 7.00 -51.93 -0.36 0.66 16 15 C 0.12 1.39 2.47 -65.44 -0.16 1.23 16 16 H 0.09 1.28 7.47 -51.93 -0.39 0.89 16 17 N -0.74 -10.02 3.78 -51.40 -0.19 -10.21 16 18 C 0.53 9.87 7.81 -10.99 -0.09 9.78 16 19 O -0.51 -11.56 15.64 5.55 0.09 -11.47 16 20 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 21 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 22 C -0.54 -15.30 9.50 30.94 0.29 -15.01 16 23 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 24 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 25 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 26 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 27 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 30 C -0.16 -1.81 5.43 -24.04 -0.13 -1.94 16 31 H 0.09 0.71 8.06 -52.48 -0.42 0.29 16 32 H 0.10 0.90 7.84 -52.48 -0.41 0.49 16 33 H 0.11 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.07 0.69 7.76 -51.93 -0.40 0.28 16 35 H 0.08 0.71 4.39 -51.93 -0.23 0.48 16 36 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 37 H 0.07 0.58 7.87 -51.93 -0.41 0.17 16 38 H 0.06 0.46 5.36 -51.93 -0.28 0.18 16 39 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 42 H 0.07 0.53 7.82 -51.93 -0.41 0.12 16 43 H 0.07 0.57 7.82 -51.93 -0.41 0.16 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.40 4.63 4.41 -40.82 -0.18 4.45 16 46 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 47 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 48 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 49 H 0.07 0.97 6.64 -51.93 -0.34 0.62 16 50 H 0.08 0.92 7.82 -51.93 -0.41 0.51 16 LS Contribution 390.01 15.07 5.88 5.88 Total: -1.00 -32.85 390.01 -10.56 -43.41 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -8.02 Total: 5.20 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -0.75 Total: -14.60 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: -0.51 Total: -41.00 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.85 -10.56 -43.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110301088.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.294 kcal (2) G-P(sol) polarization free energy of solvation -32.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds