Wall clock time and date at job start Tue Mar 31 2020 22:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50706 * 119.99930 * 2 1 4 4 C 1.53002 * 109.46830 * 125.00055 * 3 2 1 5 5 C 1.52999 * 109.46796 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47577 * 33.73798 * 5 4 3 7 7 C 1.52995 * 109.47372 * 153.74052 * 5 4 3 8 8 N 1.46907 * 109.47002 * 273.73780 * 5 4 3 9 9 C 1.50646 * 110.99748 * 70.33932 * 8 5 4 10 10 H 1.09000 * 115.88352 * 295.93193 * 9 8 5 11 11 C 1.55850 * 101.02647 * 170.23890 * 9 8 5 12 12 C 1.54836 * 103.52175 * 327.00848 * 11 9 8 13 13 C 1.50646 * 110.99971 * 178.43238 * 8 5 4 14 14 H 1.08999 * 115.88225 * 63.35023 * 13 8 5 15 15 C 1.55847 * 101.02981 * 297.64942 * 13 8 5 16 16 H 1.08995 * 110.61387 * 208.34134 * 15 13 8 17 17 N 1.46503 * 110.61253 * 85.51551 * 15 13 8 18 18 C 1.34772 * 120.00240 * 162.92937 * 17 15 13 19 19 O 1.21283 * 119.99853 * 359.72636 * 18 17 15 20 20 C 1.50702 * 120.00206 * 180.02562 * 18 17 15 21 21 S 1.80991 * 109.47292 * 180.02562 * 20 18 17 22 22 C 1.76203 * 100.00110 * 180.02562 * 21 20 18 23 23 H 1.07997 * 119.99793 * 359.97438 * 22 21 20 24 24 C 1.38796 * 119.99886 * 180.02562 * 22 21 20 25 25 N 1.31630 * 120.00233 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99967 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47163 * 59.99983 * 26 24 22 28 28 H 1.48499 * 109.47344 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.47463 * 300.00068 * 26 24 22 30 30 C 1.54837 * 103.65812 * 326.93391 * 15 13 8 31 31 H 1.08003 * 120.00142 * 179.97438 * 1 2 3 32 32 H 1.08004 * 119.99723 * 359.97438 * 1 2 3 33 33 H 1.08002 * 120.00243 * 180.02562 * 2 1 3 34 34 H 1.08994 * 109.47272 * 4.99834 * 3 2 1 35 35 H 1.08999 * 109.46855 * 244.99363 * 3 2 1 36 36 H 1.08997 * 109.47397 * 60.04636 * 4 3 2 37 37 H 1.08995 * 109.47187 * 300.03792 * 4 3 2 38 38 H 1.08999 * 109.47657 * 179.97438 * 7 5 4 39 39 H 1.09002 * 109.47335 * 299.99940 * 7 5 4 40 40 H 1.09003 * 109.47651 * 59.99639 * 7 5 4 41 41 H 1.09007 * 110.61285 * 85.51254 * 11 9 8 42 42 H 1.09005 * 110.61576 * 208.34171 * 11 9 8 43 43 H 1.08997 * 110.61636 * 241.49321 * 12 11 9 44 44 H 1.08991 * 110.61561 * 118.50331 * 12 11 9 45 45 H 0.97006 * 119.99705 * 342.93222 * 17 15 13 46 46 H 1.09000 * 109.47103 * 300.00007 * 20 18 17 47 47 H 1.09009 * 109.46773 * 59.99705 * 20 18 17 48 48 H 0.97001 * 120.00324 * 179.97438 * 25 24 22 49 49 H 1.08994 * 110.61267 * 118.58479 * 30 15 13 50 50 H 1.09006 * 110.60870 * 241.56866 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.7995 2.6584 1.1820 6 1 3.1516 3.4518 0.8096 7 6 4.2443 2.9902 2.6078 8 7 4.9800 2.5429 0.3152 9 6 4.5795 2.4670 -1.1350 10 1 3.9967 1.5919 -1.4226 11 6 5.9645 2.6127 -1.8347 12 6 6.7528 3.5485 -0.8859 13 6 5.7387 3.8432 0.2603 14 1 6.1656 4.1852 1.2031 15 6 4.6718 4.7843 -0.3760 16 1 5.1526 5.5862 -0.9362 17 7 3.7892 5.3352 0.6554 18 6 3.0318 6.4171 0.3867 19 8 3.0845 6.9376 -0.7075 20 6 2.1243 6.9841 1.4478 21 16 1.2464 8.4217 0.7857 22 6 0.2878 8.8704 2.1945 23 1 0.3648 8.2953 3.1054 24 6 -0.5668 9.9623 2.1332 25 7 -0.6610 10.6629 1.0228 26 14 -1.5835 10.4376 3.6264 27 1 -0.6789 10.7533 4.7611 28 1 -2.4080 11.6300 3.3048 29 1 -2.4714 9.3077 4.0009 30 6 3.8826 3.8518 -1.3273 31 1 -0.5400 -0.9353 -0.0004 32 1 -0.5400 0.9354 0.0004 33 1 1.8500 -0.9353 -0.0004 34 1 1.3586 2.1317 0.0895 35 1 2.6213 1.4026 -0.9313 36 1 3.7404 0.5071 1.0917 37 1 2.4773 1.2349 2.1129 38 1 4.7893 3.9342 2.6080 39 1 3.3684 3.0759 3.2510 40 1 4.8923 2.1969 2.9803 41 1 6.4576 1.6439 -1.9151 42 1 5.8512 3.0672 -2.8190 43 1 7.0306 4.4694 -1.3987 44 1 7.6365 3.0437 -0.4960 45 1 3.7500 4.9213 1.5319 46 1 1.4023 6.2261 1.7515 47 1 2.7185 7.2862 2.3104 48 1 -1.2586 11.4258 0.9798 49 1 2.8349 3.7995 -1.0315 50 1 3.9746 4.1899 -2.3595 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110301088.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:35 Heat of formation + Delta-G solvation = -6.614846 kcal Electronic energy + Delta-G solvation = -28356.018899 eV Core-core repulsion = 24702.834148 eV Total energy + Delta-G solvation = -3653.184750 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.65194 -40.15609 -37.24470 -35.53092 -34.68677 -34.60176 -31.61018 -31.20878 -30.43972 -29.07784 -28.76545 -27.64892 -24.93746 -23.37875 -22.49194 -21.84988 -20.77458 -20.70396 -20.13209 -19.67841 -18.27290 -17.83602 -17.46189 -16.89928 -16.51523 -16.14505 -16.06378 -15.74086 -15.18303 -15.03012 -14.89517 -14.67803 -14.48981 -14.07142 -13.91350 -13.85390 -13.63599 -13.31226 -13.19419 -13.03021 -12.88028 -12.87650 -12.65933 -12.54376 -12.30493 -12.16635 -12.04064 -12.01635 -11.85024 -11.77301 -11.50067 -11.37251 -11.19904 -11.15043 -10.86970 -10.32151 -10.17391 -10.12485 -9.54254 -8.69861 -8.36713 -6.15420 1.23398 1.40454 1.42292 1.44152 1.53305 1.54128 2.19424 2.25459 2.77644 2.97405 3.27540 3.54329 3.61812 3.65841 3.80665 3.90685 4.00130 4.03107 4.12791 4.19890 4.20415 4.23177 4.34874 4.37738 4.42285 4.44926 4.51555 4.57588 4.59216 4.63281 4.76410 4.82629 4.88874 4.96512 5.02506 5.05033 5.09366 5.12627 5.21230 5.26425 5.29998 5.35006 5.39088 5.44150 5.49659 5.69066 5.75851 5.90807 6.08010 6.17214 6.37428 7.04350 7.15632 8.72274 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012057 B = 0.003063 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.712412 B = 9139.581274 C =10350.037052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.109 4.109 4 C -0.095 4.095 5 C 0.033 3.967 6 H 0.055 0.945 7 C -0.154 4.154 8 N -0.474 5.474 9 C 0.046 3.954 10 H 0.132 0.868 11 C -0.114 4.114 12 C -0.108 4.108 13 C 0.045 3.955 14 H 0.129 0.871 15 C 0.111 3.889 16 H 0.074 0.926 17 N -0.711 5.711 18 C 0.531 3.469 19 O -0.559 6.559 20 C -0.132 4.132 21 S -0.145 6.145 22 C -0.549 4.549 23 H 0.082 0.918 24 C 0.015 3.985 25 N -0.911 5.911 26 Si 0.998 3.002 27 H -0.261 1.261 28 H -0.278 1.278 29 H -0.262 1.262 30 C -0.160 4.160 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.122 0.878 34 H 0.046 0.954 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.090 0.910 45 H 0.411 0.589 46 H 0.105 0.895 47 H 0.108 0.892 48 H 0.272 0.728 49 H 0.056 0.944 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.502 -24.444 0.904 27.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.170 4.170 3 C -0.145 4.145 4 C -0.133 4.133 5 C -0.076 4.076 6 H 0.073 0.927 7 C -0.212 4.212 8 N -0.197 5.197 9 C -0.062 4.062 10 H 0.149 0.851 11 C -0.152 4.152 12 C -0.147 4.147 13 C -0.064 4.064 14 H 0.146 0.854 15 C 0.005 3.995 16 H 0.093 0.907 17 N -0.368 5.368 18 C 0.317 3.683 19 O -0.437 6.437 20 C -0.283 4.283 21 S 0.082 5.918 22 C -0.697 4.697 23 H 0.100 0.900 24 C -0.190 4.190 25 N -0.547 5.547 26 Si 0.819 3.181 27 H -0.186 1.186 28 H -0.203 1.203 29 H -0.187 1.187 30 C -0.200 4.200 31 H 0.126 0.874 32 H 0.103 0.897 33 H 0.140 0.860 34 H 0.065 0.935 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.108 0.892 45 H 0.253 0.747 46 H 0.123 0.877 47 H 0.126 0.874 48 H 0.081 0.919 49 H 0.075 0.925 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.840 -23.974 -0.730 27.692 hybrid contribution -1.660 0.870 1.771 2.579 sum 12.180 -23.104 1.041 26.138 Atomic orbital electron populations 1.23992 0.96416 1.02034 1.01926 1.23070 0.95938 0.98742 0.99268 1.21175 0.98218 0.95063 1.00067 1.21466 0.96995 0.96913 0.97895 1.22368 0.92448 0.98389 0.94445 0.92702 1.21993 1.02351 1.02013 0.94838 1.67881 1.17934 1.29038 1.04802 1.24820 0.96432 0.95624 0.89324 0.85061 1.22658 0.93997 1.00666 0.97868 1.22546 0.97568 0.99891 0.94653 1.24821 0.94083 0.87839 0.99649 0.85377 1.22908 0.90908 0.96147 0.89525 0.90743 1.46431 1.43370 1.29603 1.17438 1.20136 0.80223 0.79980 0.87931 1.90683 1.66768 1.60621 1.25611 1.23390 1.01300 1.02376 1.01236 1.85549 1.51964 1.32277 1.21970 1.23174 1.28929 1.17997 0.99616 0.89985 1.26117 0.97541 0.94929 1.00388 1.70172 1.37404 1.18650 1.28491 0.85018 0.77852 0.77960 0.77267 1.18589 1.20314 1.18655 1.23753 0.99487 0.96782 1.00006 0.87392 0.89653 0.85980 0.93542 0.89820 0.90157 0.91241 0.92571 0.91279 0.90503 0.89700 0.91028 0.91076 0.89159 0.74742 0.87724 0.87397 0.91939 0.92548 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.48 14.32 67.78 0.97 -2.51 16 2 C -0.15 -2.40 9.52 25.65 0.24 -2.15 16 3 C -0.11 -1.84 4.87 29.85 0.15 -1.69 16 4 C -0.09 -1.44 4.81 30.59 0.15 -1.29 16 5 C 0.03 0.54 1.48 44.91 0.07 0.60 16 6 H 0.06 1.15 3.33 -2.39 -0.01 1.14 16 7 C -0.15 -2.19 8.01 71.98 0.58 -1.61 16 8 N -0.47 -7.39 5.34 -779.02 -4.16 -11.54 16 9 C 0.05 0.73 3.80 46.28 0.18 0.91 16 10 H 0.13 1.88 5.41 -2.39 -0.01 1.87 16 11 C -0.11 -1.51 6.43 32.21 0.21 -1.31 16 12 C -0.11 -1.47 6.44 32.21 0.21 -1.27 16 13 C 0.05 0.74 3.97 46.15 0.18 0.92 16 14 H 0.13 1.89 7.00 -2.39 -0.02 1.87 16 15 C 0.11 2.60 2.47 46.60 0.12 2.72 16 16 H 0.07 2.08 7.47 -2.39 -0.02 2.06 16 17 N -0.71 -19.04 3.78 -434.93 -1.64 -20.68 16 18 C 0.53 20.12 7.81 87.66 0.69 20.81 16 19 O -0.56 -26.19 15.64 -3.04 -0.05 -26.24 16 20 C -0.13 -5.36 6.16 71.24 0.44 -4.92 16 21 S -0.14 -8.11 20.57 -56.49 -1.16 -9.27 16 22 C -0.55 -31.58 9.50 67.95 0.65 -30.93 16 23 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 24 C 0.02 0.87 5.49 84.86 0.47 1.33 16 25 N -0.91 -56.17 13.22 21.65 0.29 -55.88 16 26 Si 1.00 43.64 29.55 68.60 2.03 45.67 16 27 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 28 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 29 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 30 C -0.16 -3.60 5.43 32.34 0.18 -3.43 16 31 H 0.11 1.49 8.06 -2.91 -0.02 1.47 16 32 H 0.09 1.61 7.84 -2.91 -0.02 1.59 16 33 H 0.12 1.53 8.06 -2.91 -0.02 1.51 16 34 H 0.05 0.97 7.76 -2.39 -0.02 0.95 16 35 H 0.08 1.36 4.39 -2.39 -0.01 1.35 16 36 H 0.08 1.14 8.07 -2.39 -0.02 1.12 16 37 H 0.07 1.05 7.87 -2.39 -0.02 1.03 16 38 H 0.06 0.79 5.36 -2.39 -0.01 0.77 16 39 H 0.07 0.94 8.12 -2.39 -0.02 0.92 16 40 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 42 H 0.07 0.96 7.82 -2.38 -0.02 0.94 16 43 H 0.07 1.01 7.82 -2.39 -0.02 0.99 16 44 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.41 9.01 4.41 -92.70 -0.41 8.60 16 46 H 0.10 3.88 8.14 -2.40 -0.02 3.86 16 47 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 48 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 49 H 0.06 1.49 6.64 -2.39 -0.02 1.47 16 50 H 0.07 1.69 7.82 -2.38 -0.02 1.67 16 Total: -1.00 -73.32 390.01 1.28 -72.04 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: 0.52 Total: 29.73 kcal Atomic # 6 Polarization: -29.27 SS G_CDS: 5.45 Total: -23.82 kcal Atomic # 7 Polarization: -82.60 SS G_CDS: -5.51 Total: -88.11 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.05 Total: -26.24 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -8.11 SS G_CDS: -1.16 Total: -9.27 kcal Total: -73.32 1.28 -72.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110301088.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.430 kcal (2) G-P(sol) polarization free energy of solvation -73.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds