Wall clock time and date at job start Tue Mar 31 2020 22:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 120.00280 * 2 1 4 4 C 1.52995 * 109.47053 * 124.99668 * 3 2 1 5 5 C 1.53006 * 109.47104 * 174.22695 * 4 3 2 6 6 H 1.08997 * 109.46683 * 305.23014 * 5 4 3 7 7 C 1.52998 * 109.47192 * 185.23112 * 5 4 3 8 8 N 1.46903 * 109.47167 * 65.22958 * 5 4 3 9 9 C 1.50647 * 110.99752 * 166.76499 * 8 5 4 10 10 H 1.08992 * 115.88070 * 295.93147 * 9 8 5 11 11 C 1.55852 * 101.02556 * 170.23919 * 9 8 5 12 12 C 1.56682 * 103.67460 * 326.77688 * 11 9 8 13 13 C 1.50651 * 111.00054 * 274.85993 * 8 5 4 14 14 H 1.09004 * 115.88115 * 63.34292 * 13 8 5 15 15 C 1.55849 * 101.02467 * 297.65269 * 13 8 5 16 16 H 1.09002 * 110.60948 * 208.34244 * 15 13 8 17 17 N 1.46499 * 110.61740 * 85.51743 * 15 13 8 18 18 C 1.34773 * 120.00361 * 173.17607 * 17 15 13 19 19 O 1.21286 * 119.99770 * 359.97438 * 18 17 15 20 20 C 1.50694 * 120.00280 * 179.97438 * 18 17 15 21 21 S 1.81004 * 109.47478 * 179.97438 * 20 18 17 22 22 C 1.76198 * 100.00247 * 179.97438 * 21 20 18 23 23 H 1.08008 * 119.99484 * 0.02562 * 22 21 20 24 24 C 1.38796 * 119.99986 * 180.02562 * 22 21 20 25 25 N 1.31621 * 119.99867 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 119.99894 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47045 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47402 * 119.99589 * 26 24 22 29 29 H 1.48507 * 109.46804 * 239.99970 * 26 24 22 30 30 C 1.54837 * 103.66140 * 326.92834 * 15 13 8 31 31 H 1.08005 * 120.00028 * 0.02562 * 1 2 3 32 32 H 1.08008 * 119.99948 * 179.97438 * 1 2 3 33 33 H 1.08005 * 120.00028 * 179.97438 * 2 1 3 34 34 H 1.09005 * 109.46678 * 4.99970 * 3 2 1 35 35 H 1.08993 * 109.46994 * 244.99980 * 3 2 1 36 36 H 1.09004 * 109.47467 * 54.22852 * 4 3 2 37 37 H 1.08999 * 109.47273 * 294.22538 * 4 3 2 38 38 H 1.08991 * 109.47025 * 174.70038 * 7 5 4 39 39 H 1.09004 * 109.47129 * 294.70300 * 7 5 4 40 40 H 1.08997 * 109.47320 * 54.69896 * 7 5 4 41 41 H 1.09000 * 110.61456 * 85.51256 * 11 9 8 42 42 H 1.08993 * 110.61433 * 208.33970 * 11 9 8 43 43 H 1.09003 * 111.42576 * 241.92087 * 12 11 9 44 44 H 1.09000 * 110.60442 * 118.37529 * 12 11 9 45 45 H 0.97000 * 119.99475 * 353.17116 * 17 15 13 46 46 H 1.09003 * 109.47198 * 299.99880 * 20 18 17 47 47 H 1.08999 * 109.47283 * 59.99678 * 20 18 17 48 48 H 0.97000 * 119.99950 * 180.02562 * 25 24 22 49 49 H 1.08992 * 110.61341 * 118.58546 * 30 15 13 50 50 H 1.08998 * 110.61536 * 241.57674 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 6 3.9008 2.5919 1.1004 6 1 4.3924 2.6327 0.1284 7 6 4.9582 2.5559 2.2056 8 7 3.0543 3.7803 1.2712 9 6 3.8912 5.0082 1.5189 10 1 4.4755 5.0080 2.4390 11 6 2.8154 6.1301 1.4052 12 6 1.8187 5.5798 0.3288 13 6 2.4413 4.1995 -0.0396 14 1 1.7594 3.4825 -0.4968 15 6 3.7160 4.5395 -0.8694 16 1 3.4939 5.2976 -1.6205 17 7 4.2574 3.3334 -1.5007 18 6 5.2791 3.4307 -2.3743 19 8 5.7500 4.5168 -2.6381 20 6 5.8363 2.1900 -3.0232 21 16 7.1884 2.6467 -4.1365 22 6 7.6398 1.0538 -4.7393 23 1 7.1105 0.1769 -4.3966 24 6 8.6754 0.9260 -5.6546 25 7 9.3199 1.9947 -6.0725 26 14 9.1534 -0.7628 -6.2942 27 1 8.2811 -1.7922 -5.6740 28 1 8.9892 -0.7980 -7.7696 29 1 10.5703 -1.0408 -5.9469 30 6 4.7037 5.0918 0.1873 31 1 -0.5400 0.9353 -0.0004 32 1 -0.5400 -0.9354 -0.0004 33 1 1.8500 -0.9353 0.0004 34 1 1.3586 2.1316 0.0896 35 1 2.6213 1.4025 -0.9313 36 1 3.6735 0.4502 1.1481 37 1 2.4719 1.3390 2.1149 38 1 5.6331 3.4040 2.0905 39 1 4.4692 2.6100 3.1783 40 1 5.5256 1.6279 2.1355 41 1 2.3103 6.2757 2.3601 42 1 3.2671 7.0620 1.0655 43 1 1.7792 6.2288 -0.5461 44 1 0.8247 5.4505 0.7570 45 1 3.8805 2.4648 -1.2899 46 1 6.2109 1.5146 -2.2540 47 1 5.0503 1.6930 -3.5917 48 1 10.0434 1.9055 -6.7124 49 1 5.5960 4.4683 0.2414 50 1 4.9691 6.1247 -0.0383 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110301089.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:40 Heat of formation + Delta-G solvation = 21.422359 kcal Electronic energy + Delta-G solvation = -28559.115901 eV Core-core repulsion = 24907.146935 eV Total energy + Delta-G solvation = -3651.968966 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.77951 -38.71214 -36.55354 -34.17523 -34.02334 -32.45079 -30.59602 -30.14473 -29.34139 -28.51561 -27.51719 -25.49449 -24.22545 -22.46254 -21.64094 -21.05046 -20.24501 -19.56974 -18.96990 -17.87016 -17.22734 -16.56736 -16.17291 -15.59356 -15.18678 -14.83591 -14.80467 -14.61913 -14.21669 -13.90565 -13.79218 -13.40823 -13.36221 -13.20703 -12.84383 -12.59494 -12.57294 -12.34708 -12.17428 -11.80254 -11.77934 -11.65238 -11.46140 -11.30787 -11.15315 -11.08697 -11.03936 -10.87113 -10.81525 -10.70350 -10.62376 -10.44911 -9.82864 -9.52690 -9.39512 -9.10798 -9.05317 -8.47639 -8.25989 -6.52498 -6.23930 -3.94548 2.07237 2.97106 3.01510 3.20029 3.26225 3.30628 3.57236 3.66413 4.18136 4.36958 4.38660 4.43657 4.52012 4.77089 4.84819 4.86043 4.94867 5.00230 5.05291 5.09649 5.11518 5.18803 5.22049 5.28270 5.33423 5.36618 5.42017 5.48094 5.56430 5.61683 5.63666 5.72633 5.75103 5.75871 5.83579 5.88367 5.92222 5.97376 6.00113 6.03628 6.03826 6.09547 6.17627 6.42189 6.46399 6.55540 6.62585 6.88070 7.57590 7.60356 8.33325 8.54793 9.21704 10.83553 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012388 B = 0.003193 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.631324 B = 8767.538918 C =10031.507334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.150 4.150 3 C -0.105 4.105 4 C -0.102 4.102 5 C 0.020 3.980 6 H 0.088 0.912 7 C -0.148 4.148 8 N -0.480 5.480 9 C 0.045 3.955 10 H 0.115 0.885 11 C -0.116 4.116 12 C -0.112 4.112 13 C 0.027 3.973 14 H 0.125 0.875 15 C 0.118 3.882 16 H 0.088 0.912 17 N -0.733 5.733 18 C 0.528 3.472 19 O -0.510 6.510 20 C -0.155 4.155 21 S -0.058 6.058 22 C -0.536 4.536 23 H 0.073 0.927 24 C 0.074 3.926 25 N -0.867 5.867 26 Si 0.918 3.082 27 H -0.272 1.272 28 H -0.280 1.280 29 H -0.280 1.280 30 C -0.156 4.156 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.398 0.602 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.268 0.732 49 H 0.074 0.926 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.460 1.968 17.873 25.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.168 4.168 3 C -0.142 4.142 4 C -0.140 4.140 5 C -0.089 4.089 6 H 0.105 0.895 7 C -0.206 4.206 8 N -0.203 5.203 9 C -0.063 4.063 10 H 0.133 0.867 11 C -0.154 4.154 12 C -0.150 4.150 13 C -0.082 4.082 14 H 0.143 0.857 15 C 0.012 3.988 16 H 0.106 0.894 17 N -0.393 5.393 18 C 0.314 3.686 19 O -0.384 6.384 20 C -0.306 4.306 21 S 0.169 5.831 22 C -0.684 4.684 23 H 0.091 0.909 24 C -0.135 4.135 25 N -0.503 5.503 26 Si 0.745 3.255 27 H -0.196 1.196 28 H -0.205 1.205 29 H -0.205 1.205 30 C -0.196 4.196 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.126 0.874 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.239 0.761 46 H 0.106 0.894 47 H 0.107 0.893 48 H 0.078 0.922 49 H 0.093 0.907 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.938 3.666 17.782 24.830 hybrid contribution 0.297 -2.710 -0.745 2.826 sum -16.640 0.956 17.037 23.834 Atomic orbital electron populations 1.23832 0.95971 1.01717 1.01850 1.22989 0.96061 0.98497 0.99258 1.21177 0.98771 0.95879 0.98362 1.21540 0.97247 0.96575 0.98623 1.22652 0.93893 0.90877 1.01463 0.89453 1.21913 0.97932 1.02138 0.98581 1.67751 1.25299 1.01740 1.25555 1.24540 0.93836 0.90539 0.97420 0.86701 1.22922 0.96163 0.97120 0.99145 1.22858 0.98905 0.94469 0.98769 1.25086 0.95533 0.97693 0.89898 0.85717 1.22713 0.93260 0.87976 0.94881 0.89415 1.46811 1.37055 1.09773 1.45698 1.20404 0.79163 0.91092 0.77913 1.90702 1.58292 1.28819 1.60543 1.23559 1.05094 0.98176 1.03775 1.85389 1.35237 1.12413 1.50074 1.22908 1.21864 0.93070 1.30540 0.90892 1.24985 0.95197 0.97895 0.95455 1.70022 1.21473 1.28406 1.30358 0.86124 0.78431 0.82354 0.78639 1.19602 1.20535 1.20543 1.23768 0.98820 1.02614 0.94426 0.88666 0.88683 0.87432 0.90119 0.91807 0.91463 0.91056 0.92404 0.92168 0.92128 0.91171 0.91214 0.90872 0.90744 0.76125 0.89364 0.89300 0.92223 0.90685 0.90316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.56 14.32 29.01 0.42 -1.15 16 2 C -0.15 -1.27 9.52 -36.03 -0.34 -1.61 16 3 C -0.10 -0.89 4.19 -27.89 -0.12 -1.00 16 4 C -0.10 -0.89 4.87 -26.73 -0.13 -1.02 16 5 C 0.02 0.19 1.59 -67.71 -0.11 0.09 16 6 H 0.09 0.98 2.94 -53.98 -0.16 0.82 16 7 C -0.15 -1.39 8.38 37.16 0.31 -1.08 16 8 N -0.48 -4.43 5.36 -197.58 -1.06 -5.49 16 9 C 0.04 0.41 3.89 -62.35 -0.24 0.17 16 10 H 0.12 0.99 7.03 -51.93 -0.37 0.63 16 11 C -0.12 -0.92 6.48 -23.22 -0.15 -1.07 16 12 C -0.11 -0.89 6.57 -23.23 -0.15 -1.04 16 13 C 0.03 0.24 3.63 -62.56 -0.23 0.02 16 14 H 0.13 1.07 4.97 -51.93 -0.26 0.81 16 15 C 0.12 1.40 2.46 -65.44 -0.16 1.24 16 16 H 0.09 1.17 7.74 -51.93 -0.40 0.76 16 17 N -0.73 -9.91 3.54 -51.40 -0.18 -10.09 16 18 C 0.53 9.76 7.60 -10.99 -0.08 9.68 16 19 O -0.51 -11.35 15.56 5.55 0.09 -11.27 16 20 C -0.16 -3.14 6.16 36.00 0.22 -2.91 16 21 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 22 C -0.54 -15.22 9.50 30.94 0.29 -14.92 16 23 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 24 C 0.07 2.10 5.49 -17.44 -0.10 2.01 16 25 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16 26 Si 0.92 21.36 29.55 -169.99 -5.02 16.33 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 29 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 30 C -0.16 -1.84 4.96 -24.04 -0.12 -1.95 16 31 H 0.10 0.70 7.84 -52.48 -0.41 0.29 16 32 H 0.09 0.67 8.06 -52.48 -0.42 0.24 16 33 H 0.11 0.87 8.06 -52.48 -0.42 0.45 16 34 H 0.08 0.67 5.07 -51.93 -0.26 0.41 16 35 H 0.06 0.57 5.71 -51.93 -0.30 0.27 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.57 5.90 -51.93 -0.31 0.26 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.54 7.82 -51.93 -0.41 0.13 16 43 H 0.07 0.56 7.81 -51.93 -0.41 0.16 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.40 4.61 4.10 -40.82 -0.17 4.44 16 46 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 47 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 48 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 49 H 0.07 1.04 6.63 -51.93 -0.34 0.69 16 50 H 0.08 0.96 7.82 -51.93 -0.41 0.55 16 LS Contribution 387.49 15.07 5.84 5.84 Total: -1.00 -32.69 387.49 -10.47 -43.16 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -7.96 Total: 5.20 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -0.69 Total: -14.56 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: -0.51 Total: -40.93 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.27 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.69 -10.47 -43.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110301089.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.578 kcal (2) G-P(sol) polarization free energy of solvation -32.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds