Wall clock time and date at job start Tue Mar 31 2020 22:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 120.00280 * 2 1 4 4 C 1.52995 * 109.47053 * 124.99668 * 3 2 1 5 5 C 1.53006 * 109.47104 * 174.22695 * 4 3 2 6 6 H 1.08997 * 109.46683 * 305.23014 * 5 4 3 7 7 C 1.52998 * 109.47192 * 185.23112 * 5 4 3 8 8 N 1.46903 * 109.47167 * 65.22958 * 5 4 3 9 9 C 1.50647 * 110.99752 * 166.76499 * 8 5 4 10 10 H 1.08992 * 115.88070 * 295.93147 * 9 8 5 11 11 C 1.55852 * 101.02556 * 170.23919 * 9 8 5 12 12 C 1.56682 * 103.67460 * 326.77688 * 11 9 8 13 13 C 1.50651 * 111.00054 * 274.85993 * 8 5 4 14 14 H 1.09004 * 115.88115 * 63.34292 * 13 8 5 15 15 C 1.55849 * 101.02467 * 297.65269 * 13 8 5 16 16 H 1.09002 * 110.60948 * 208.34244 * 15 13 8 17 17 N 1.46499 * 110.61740 * 85.51743 * 15 13 8 18 18 C 1.34773 * 120.00361 * 173.17607 * 17 15 13 19 19 O 1.21286 * 119.99770 * 359.97438 * 18 17 15 20 20 C 1.50694 * 120.00280 * 179.97438 * 18 17 15 21 21 S 1.81004 * 109.47478 * 179.97438 * 20 18 17 22 22 C 1.76198 * 100.00247 * 179.97438 * 21 20 18 23 23 H 1.08008 * 119.99484 * 0.02562 * 22 21 20 24 24 C 1.38796 * 119.99986 * 180.02562 * 22 21 20 25 25 N 1.31621 * 119.99867 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 119.99894 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47045 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47402 * 119.99589 * 26 24 22 29 29 H 1.48507 * 109.46804 * 239.99970 * 26 24 22 30 30 C 1.54837 * 103.66140 * 326.92834 * 15 13 8 31 31 H 1.08005 * 120.00028 * 0.02562 * 1 2 3 32 32 H 1.08008 * 119.99948 * 179.97438 * 1 2 3 33 33 H 1.08005 * 120.00028 * 179.97438 * 2 1 3 34 34 H 1.09005 * 109.46678 * 4.99970 * 3 2 1 35 35 H 1.08993 * 109.46994 * 244.99980 * 3 2 1 36 36 H 1.09004 * 109.47467 * 54.22852 * 4 3 2 37 37 H 1.08999 * 109.47273 * 294.22538 * 4 3 2 38 38 H 1.08991 * 109.47025 * 174.70038 * 7 5 4 39 39 H 1.09004 * 109.47129 * 294.70300 * 7 5 4 40 40 H 1.08997 * 109.47320 * 54.69896 * 7 5 4 41 41 H 1.09000 * 110.61456 * 85.51256 * 11 9 8 42 42 H 1.08993 * 110.61433 * 208.33970 * 11 9 8 43 43 H 1.09003 * 111.42576 * 241.92087 * 12 11 9 44 44 H 1.09000 * 110.60442 * 118.37529 * 12 11 9 45 45 H 0.97000 * 119.99475 * 353.17116 * 17 15 13 46 46 H 1.09003 * 109.47198 * 299.99880 * 20 18 17 47 47 H 1.08999 * 109.47283 * 59.99678 * 20 18 17 48 48 H 0.97000 * 119.99950 * 180.02562 * 25 24 22 49 49 H 1.08992 * 110.61341 * 118.58546 * 30 15 13 50 50 H 1.08998 * 110.61536 * 241.57674 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0350 1.3330 1.1816 5 6 3.9008 2.5919 1.1004 6 1 4.3924 2.6327 0.1284 7 6 4.9582 2.5559 2.2056 8 7 3.0543 3.7803 1.2712 9 6 3.8912 5.0082 1.5189 10 1 4.4755 5.0080 2.4390 11 6 2.8154 6.1301 1.4052 12 6 1.8187 5.5798 0.3288 13 6 2.4413 4.1995 -0.0396 14 1 1.7594 3.4825 -0.4968 15 6 3.7160 4.5395 -0.8694 16 1 3.4939 5.2976 -1.6205 17 7 4.2574 3.3334 -1.5007 18 6 5.2791 3.4307 -2.3743 19 8 5.7500 4.5168 -2.6381 20 6 5.8363 2.1900 -3.0232 21 16 7.1884 2.6467 -4.1365 22 6 7.6398 1.0538 -4.7393 23 1 7.1105 0.1769 -4.3966 24 6 8.6754 0.9260 -5.6546 25 7 9.3199 1.9947 -6.0725 26 14 9.1534 -0.7628 -6.2942 27 1 8.2811 -1.7922 -5.6740 28 1 8.9892 -0.7980 -7.7696 29 1 10.5703 -1.0408 -5.9469 30 6 4.7037 5.0918 0.1873 31 1 -0.5400 0.9353 -0.0004 32 1 -0.5400 -0.9354 -0.0004 33 1 1.8500 -0.9353 0.0004 34 1 1.3586 2.1316 0.0896 35 1 2.6213 1.4025 -0.9313 36 1 3.6735 0.4502 1.1481 37 1 2.4719 1.3390 2.1149 38 1 5.6331 3.4040 2.0905 39 1 4.4692 2.6100 3.1783 40 1 5.5256 1.6279 2.1355 41 1 2.3103 6.2757 2.3601 42 1 3.2671 7.0620 1.0655 43 1 1.7792 6.2288 -0.5461 44 1 0.8247 5.4505 0.7570 45 1 3.8805 2.4648 -1.2899 46 1 6.2109 1.5146 -2.2540 47 1 5.0503 1.6930 -3.5917 48 1 10.0434 1.9055 -6.7124 49 1 5.5960 4.4683 0.2414 50 1 4.9691 6.1247 -0.0383 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110301089.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:39 Heat of formation + Delta-G solvation = 1.128786 kcal Electronic energy + Delta-G solvation = -28559.995896 eV Core-core repulsion = 24907.146935 eV Total energy + Delta-G solvation = -3652.848961 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.68492 -40.12725 -37.25264 -35.42677 -34.74522 -34.60734 -31.58631 -31.27877 -30.12204 -29.39586 -28.58216 -27.64862 -24.93513 -23.46885 -22.49480 -21.96054 -21.17333 -20.38481 -20.00165 -19.59439 -18.23557 -17.80102 -17.42516 -16.90243 -16.46771 -16.23951 -16.02224 -15.90802 -15.33997 -14.96826 -14.69758 -14.60295 -14.44829 -14.12743 -14.04582 -13.83776 -13.58770 -13.18970 -13.16654 -13.01156 -12.91807 -12.89820 -12.62886 -12.48586 -12.41385 -12.27667 -12.07773 -11.90656 -11.75806 -11.65399 -11.50180 -11.33754 -11.23240 -11.17942 -10.85346 -10.31316 -10.20876 -10.14086 -9.39989 -8.69454 -8.37041 -6.15262 1.23229 1.39791 1.43437 1.46166 1.51729 1.55986 2.16368 2.24865 2.79697 2.97411 3.26481 3.56089 3.59103 3.65038 3.82540 3.88391 3.98975 4.04319 4.17385 4.18224 4.20705 4.24832 4.39360 4.41099 4.42464 4.47866 4.52043 4.56880 4.62501 4.65351 4.77010 4.78628 4.89751 4.95703 5.05203 5.07817 5.12662 5.13228 5.19828 5.26278 5.27305 5.35358 5.39878 5.41264 5.47929 5.71004 5.81526 5.93957 6.08884 6.17740 6.34073 7.04526 7.13503 8.72418 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012388 B = 0.003193 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.631324 B = 8767.538918 C =10031.507334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.163 4.163 3 C -0.101 4.101 4 C -0.096 4.096 5 C 0.021 3.979 6 H 0.070 0.930 7 C -0.147 4.147 8 N -0.473 5.473 9 C 0.051 3.949 10 H 0.123 0.877 11 C -0.113 4.113 12 C -0.109 4.109 13 C 0.035 3.965 14 H 0.137 0.863 15 C 0.112 3.888 16 H 0.074 0.926 17 N -0.708 5.708 18 C 0.530 3.470 19 O -0.555 6.555 20 C -0.133 4.133 21 S -0.143 6.143 22 C -0.547 4.547 23 H 0.082 0.918 24 C 0.015 3.985 25 N -0.910 5.910 26 Si 0.998 3.002 27 H -0.257 1.257 28 H -0.273 1.273 29 H -0.273 1.273 30 C -0.155 4.155 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.048 0.952 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.410 0.590 46 H 0.105 0.895 47 H 0.107 0.893 48 H 0.271 0.729 49 H 0.050 0.950 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.579 0.361 19.288 27.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.181 4.181 3 C -0.138 4.138 4 C -0.134 4.134 5 C -0.088 4.088 6 H 0.087 0.913 7 C -0.204 4.204 8 N -0.196 5.196 9 C -0.058 4.058 10 H 0.141 0.859 11 C -0.151 4.151 12 C -0.148 4.148 13 C -0.073 4.073 14 H 0.154 0.846 15 C 0.007 3.993 16 H 0.092 0.908 17 N -0.367 5.367 18 C 0.317 3.683 19 O -0.432 6.432 20 C -0.284 4.284 21 S 0.084 5.916 22 C -0.695 4.695 23 H 0.100 0.900 24 C -0.190 4.190 25 N -0.547 5.547 26 Si 0.820 3.180 27 H -0.181 1.181 28 H -0.199 1.199 29 H -0.199 1.199 30 C -0.195 4.195 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.127 0.873 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.109 0.891 45 H 0.253 0.747 46 H 0.123 0.877 47 H 0.125 0.875 48 H 0.080 0.920 49 H 0.069 0.931 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.104 2.041 19.238 27.189 hybrid contribution 0.873 -2.173 -1.089 2.583 sum -18.231 -0.132 18.149 25.725 Atomic orbital electron populations 1.24000 0.95903 1.02460 1.00796 1.23036 0.96377 0.98481 1.00216 1.21132 0.98667 0.96215 0.97798 1.21483 0.97105 0.95950 0.98830 1.22607 0.94122 0.91613 1.00465 0.91297 1.21894 0.97776 1.01818 0.98914 1.67793 1.24967 1.01542 1.25267 1.24584 0.93779 0.91216 0.96193 0.85897 1.22930 0.95681 0.96558 0.99885 1.22901 0.99522 0.93393 0.98945 1.25173 0.94227 0.98929 0.89013 0.84600 1.22934 0.94769 0.86876 0.94746 0.90790 1.46625 1.35149 1.11240 1.43704 1.20140 0.80023 0.89730 0.78437 1.90689 1.60098 1.29993 1.62412 1.23400 1.02821 0.99352 1.02822 1.85545 1.39190 1.14174 1.52727 1.23233 1.22296 0.93142 1.30847 0.90024 1.26106 0.94926 1.02458 0.95487 1.70179 1.22185 1.31172 1.31160 0.84920 0.78300 0.76808 0.78018 1.18061 1.19854 1.19868 1.23712 0.98219 1.01456 0.96147 0.88062 0.87907 0.87316 0.89710 0.92465 0.91297 0.90906 0.93266 0.91289 0.92089 0.89819 0.91086 0.90657 0.89106 0.74659 0.87654 0.87504 0.91954 0.93102 0.91238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.63 14.32 67.78 0.97 -1.66 16 2 C -0.16 -2.41 9.52 25.65 0.24 -2.17 16 3 C -0.10 -1.49 4.19 29.85 0.13 -1.37 16 4 C -0.10 -1.47 4.87 30.59 0.15 -1.32 16 5 C 0.02 0.38 1.59 44.92 0.07 0.45 16 6 H 0.07 1.48 2.94 -6.43 -0.02 1.46 16 7 C -0.15 -2.57 8.38 71.98 0.60 -1.97 16 8 N -0.47 -7.76 5.36 -779.01 -4.18 -11.93 16 9 C 0.05 0.86 3.89 46.28 0.18 1.04 16 10 H 0.12 1.93 7.03 -2.39 -0.02 1.91 16 11 C -0.11 -1.55 6.48 32.87 0.21 -1.33 16 12 C -0.11 -1.47 6.57 32.86 0.22 -1.25 16 13 C 0.04 0.58 3.63 46.14 0.17 0.74 16 14 H 0.14 1.96 4.97 -2.38 -0.01 1.95 16 15 C 0.11 2.62 2.46 46.60 0.11 2.74 16 16 H 0.07 1.97 7.74 -2.39 -0.02 1.96 16 17 N -0.71 -18.83 3.54 -434.94 -1.54 -20.37 16 18 C 0.53 19.90 7.60 87.66 0.67 20.57 16 19 O -0.55 -25.65 15.56 -3.05 -0.05 -25.70 16 20 C -0.13 -5.37 6.16 71.23 0.44 -4.93 16 21 S -0.14 -8.00 20.57 -56.49 -1.16 -9.16 16 22 C -0.55 -31.36 9.50 67.95 0.65 -30.71 16 23 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 24 C 0.02 0.86 5.49 84.86 0.47 1.33 16 25 N -0.91 -55.93 13.22 21.65 0.29 -55.65 16 26 Si 1.00 43.61 29.55 68.60 2.03 45.64 16 27 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 28 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 29 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 30 C -0.16 -3.66 4.96 32.34 0.16 -3.50 16 31 H 0.10 1.23 7.84 -2.91 -0.02 1.20 16 32 H 0.10 1.21 8.06 -2.91 -0.02 1.19 16 33 H 0.11 1.56 8.06 -2.91 -0.02 1.54 16 34 H 0.08 1.17 5.07 -2.38 -0.01 1.16 16 35 H 0.06 0.91 5.71 -2.39 -0.01 0.89 16 36 H 0.07 1.04 8.14 -2.38 -0.02 1.03 16 37 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.05 0.94 5.90 -2.39 -0.01 0.93 16 39 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 42 H 0.07 0.98 7.82 -2.39 -0.02 0.96 16 43 H 0.07 1.01 7.81 -2.39 -0.02 0.99 16 44 H 0.09 0.98 8.14 -2.39 -0.02 0.97 16 45 H 0.41 9.01 4.10 -92.71 -0.38 8.63 16 46 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 47 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 48 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 49 H 0.05 1.45 6.63 -2.39 -0.02 1.43 16 50 H 0.07 1.74 7.82 -2.39 -0.02 1.72 16 Total: -1.00 -72.59 387.49 1.36 -71.23 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: 0.54 Total: 29.30 kcal Atomic # 6 Polarization: -28.79 SS G_CDS: 5.43 Total: -23.35 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -5.43 Total: -87.95 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.05 Total: -25.70 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -8.00 SS G_CDS: -1.16 Total: -9.16 kcal Total: -72.59 1.36 -71.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110301089.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.360 kcal (2) G-P(sol) polarization free energy of solvation -72.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds