Wall clock time and date at job start Tue Mar 31 2020 22:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35962 * 116.99795 * 2 1 4 4 C 1.38656 * 120.06293 * 0.02562 * 3 2 1 5 5 C 1.38179 * 119.96939 * 179.70799 * 4 3 2 6 6 C 1.38260 * 120.09383 * 0.54958 * 5 4 3 7 7 C 1.50702 * 119.93488 * 179.72843 * 6 5 4 8 8 C 1.50703 * 109.46823 * 269.72400 * 7 6 5 9 9 O 1.21277 * 120.00063 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99847 * 180.02562 * 8 7 6 11 11 C 1.46504 * 120.00111 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.46891 * 325.00262 * 11 10 8 13 13 C 1.53006 * 109.46883 * 84.99828 * 11 10 8 14 14 C 1.52997 * 109.47417 * 204.99914 * 11 10 8 15 15 C 1.53003 * 109.46992 * 65.00416 * 14 11 10 16 16 H 1.09002 * 109.46996 * 304.99872 * 15 14 11 17 17 C 1.52995 * 109.46877 * 184.99985 * 15 14 11 18 18 N 1.46501 * 109.47140 * 64.99727 * 15 14 11 19 19 C 1.36936 * 119.99877 * 204.99913 * 18 15 14 20 20 H 1.08006 * 119.99970 * 0.02562 * 19 18 15 21 21 C 1.38808 * 120.00184 * 180.02562 * 19 18 15 22 22 N 1.31625 * 119.99970 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00347 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47410 * 89.99924 * 23 21 19 25 25 H 1.48501 * 109.47167 * 210.00353 * 23 21 19 26 26 H 1.48507 * 109.46825 * 329.99874 * 23 21 19 27 27 C 1.38255 * 120.12736 * 359.44836 * 6 5 4 28 28 C 1.38340 * 120.03006 * 0.27774 * 27 6 5 29 29 F 1.35093 * 120.04608 * 179.97438 * 28 27 6 30 30 H 1.08993 * 109.47372 * 300.00366 * 1 2 3 31 31 H 1.08995 * 109.46866 * 60.00582 * 1 2 3 32 32 H 1.09004 * 109.46925 * 180.02562 * 1 2 3 33 33 H 1.08003 * 120.01450 * 359.97438 * 4 3 2 34 34 H 1.07997 * 119.95443 * 180.29486 * 5 4 3 35 35 H 1.08999 * 109.47106 * 149.73160 * 7 6 5 36 36 H 1.08988 * 109.47426 * 29.72568 * 7 6 5 37 37 H 0.97003 * 120.00265 * 0.02562 * 10 8 7 38 38 H 1.09000 * 109.47050 * 180.02562 * 13 11 10 39 39 H 1.09001 * 109.46801 * 300.00349 * 13 11 10 40 40 H 1.09001 * 109.46998 * 59.99945 * 13 11 10 41 41 H 1.08998 * 109.47097 * 184.99825 * 14 11 10 42 42 H 1.09002 * 109.47223 * 305.00006 * 14 11 10 43 43 H 1.08999 * 109.47475 * 299.99318 * 17 15 14 44 44 H 1.09004 * 109.47493 * 60.00072 * 17 15 14 45 45 H 1.09001 * 109.47176 * 179.97438 * 17 15 14 46 46 H 0.96995 * 120.00007 * 25.00642 * 18 15 14 47 47 H 0.96996 * 120.00124 * 180.02562 * 22 21 19 48 48 H 1.07998 * 119.98490 * 180.25001 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2922 2.3751 0.0005 5 6 1.9215 3.6053 0.0066 6 6 3.3022 3.6778 0.0007 7 6 3.9848 5.0213 0.0012 8 6 4.2121 5.4698 -1.4195 9 8 3.8554 4.7673 -2.3415 10 7 4.8126 6.6510 -1.6653 11 6 5.0342 7.0867 -3.0464 12 1 5.2548 6.2202 -3.6698 13 6 3.7765 7.7840 -3.5691 14 6 6.2132 8.0607 -3.0911 15 6 7.4947 7.3289 -2.6872 16 1 7.3542 6.8610 -1.7128 17 6 8.6504 8.3287 -2.6109 18 7 7.8041 6.2999 -3.6830 19 6 8.5519 5.2084 -3.3300 20 1 8.9133 5.1059 -2.3174 21 6 8.8455 4.2336 -4.2736 22 7 8.4055 4.3586 -5.5078 23 14 9.8649 2.7443 -3.7920 24 1 8.9662 1.6617 -3.3173 25 1 10.6337 2.2686 -4.9701 26 1 10.8056 3.1188 -2.7055 27 6 4.0579 2.5200 0.0002 28 6 3.4333 1.2856 -0.0002 29 9 4.1714 0.1541 -0.0012 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 0.2136 2.3200 0.0005 34 1 1.3340 4.5115 0.0119 35 1 4.9429 4.9419 0.5148 36 1 3.3560 5.7481 0.5154 37 1 5.0989 7.2123 -0.9279 38 1 3.9411 8.1077 -4.5968 39 1 2.9365 7.0900 -3.5373 40 1 3.5558 8.6504 -2.9457 41 1 6.3222 8.4530 -4.1022 42 1 6.0312 8.8835 -2.3997 43 1 8.7910 8.7965 -3.5853 44 1 8.4202 9.0943 -1.8700 45 1 9.5633 7.8075 -2.3227 46 1 7.4793 6.3917 -4.5923 47 1 8.6103 3.6773 -6.1671 48 1 5.1362 2.5793 -0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134909279.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:34 Heat of formation + Delta-G solvation = -92.821740 kcal Electronic energy + Delta-G solvation = -29677.386738 eV Core-core repulsion = 25454.250600 eV Total energy + Delta-G solvation = -4223.136138 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.69824 -40.28744 -39.47854 -37.76184 -36.65795 -34.38884 -32.47772 -31.99577 -30.80531 -30.54442 -28.57815 -28.23839 -26.58368 -26.25398 -23.58509 -22.86513 -22.31022 -20.97159 -20.14192 -19.67489 -18.43044 -17.29585 -17.05197 -16.83312 -16.74601 -16.20083 -15.79985 -15.06750 -14.97307 -14.90208 -14.59054 -14.33099 -14.28147 -13.91137 -13.68632 -13.52544 -13.16688 -12.85544 -12.72245 -12.43261 -12.33502 -12.16329 -12.02353 -11.76731 -11.70487 -11.70025 -11.52960 -11.23399 -11.18923 -10.99390 -10.77877 -10.58124 -10.38889 -10.19088 -9.86322 -9.58164 -9.50171 -8.95951 -8.83558 -8.65355 -8.18240 -6.87835 -5.68855 -2.96800 1.09742 1.13608 2.97839 3.00167 3.30704 3.49784 3.54193 3.56529 3.71897 4.17851 4.54028 4.54619 4.66492 4.76404 4.89203 4.98429 5.06253 5.13177 5.19640 5.22790 5.30226 5.40682 5.45513 5.49455 5.52584 5.65753 5.71248 5.80815 5.91845 5.96523 5.98140 6.02609 6.04037 6.15795 6.31470 6.37825 6.39628 6.46460 6.55405 6.59529 6.75946 6.85078 6.96906 7.09791 7.14289 7.75777 7.85064 8.49507 8.61566 9.60918 10.18333 10.52232 11.53906 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009784 B = 0.003508 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2861.065710 B = 7979.025574 C = 9975.214151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.090 3.910 4 C -0.181 4.181 5 C -0.076 4.076 6 C -0.068 4.068 7 C -0.100 4.100 8 C 0.513 3.487 9 O -0.524 6.524 10 N -0.718 5.718 11 C 0.144 3.856 12 H 0.105 0.895 13 C -0.160 4.160 14 C -0.131 4.131 15 C 0.172 3.828 16 H 0.045 0.955 17 C -0.166 4.166 18 N -0.720 5.720 19 C -0.235 4.235 20 H 0.066 0.934 21 C -0.011 4.011 22 N -0.931 5.931 23 Si 0.900 3.100 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.283 1.283 27 C -0.097 4.097 28 C 0.073 3.927 29 F -0.132 7.132 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.100 0.900 33 H 0.136 0.864 34 H 0.129 0.871 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.393 0.607 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.049 0.951 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.045 0.955 44 H 0.033 0.967 45 H 0.051 0.949 46 H 0.382 0.618 47 H 0.254 0.746 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.977 3.765 14.730 22.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.045 3.955 4 C -0.200 4.200 5 C -0.095 4.095 6 C -0.069 4.069 7 C -0.140 4.140 8 C 0.298 3.702 9 O -0.399 6.399 10 N -0.369 5.369 11 C 0.040 3.960 12 H 0.123 0.877 13 C -0.218 4.218 14 C -0.169 4.169 15 C 0.062 3.938 16 H 0.063 0.937 17 C -0.226 4.226 18 N -0.362 5.362 19 C -0.366 4.366 20 H 0.084 0.916 21 C -0.207 4.207 22 N -0.579 5.579 23 Si 0.732 3.268 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.209 1.209 27 C -0.116 4.116 28 C 0.053 3.947 29 F -0.111 7.111 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.119 0.881 33 H 0.154 0.846 34 H 0.147 0.853 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.227 0.773 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.064 0.936 44 H 0.052 0.948 45 H 0.071 0.929 46 H 0.216 0.784 47 H 0.064 0.936 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -17.027 2.867 14.111 22.300 hybrid contribution 0.624 -0.596 0.156 0.877 sum -16.403 2.271 14.268 21.858 Atomic orbital electron populations 1.23087 0.78172 1.04088 1.01429 1.86134 1.21539 1.25961 1.88882 1.18976 0.90783 0.85547 1.00242 1.21014 1.00008 0.91394 1.07593 1.20786 0.93685 0.97209 0.97785 1.19006 0.93133 0.93491 1.01227 1.20642 1.02807 0.94739 0.95813 1.20322 0.78026 0.81121 0.90751 1.90760 1.49764 1.53402 1.45990 1.45965 1.61262 1.20786 1.08936 1.21010 0.93380 0.98895 0.82741 0.87719 1.22177 0.98583 1.00058 1.01024 1.22165 0.95190 0.97242 1.02335 1.20212 0.90529 0.89230 0.93825 0.93658 1.22464 1.01201 0.98987 0.99934 1.42388 1.63117 1.21401 1.09267 1.19132 1.24598 0.97742 0.95155 0.91553 1.24682 1.01372 0.98858 0.95747 1.69643 1.50334 1.35630 1.02317 0.86293 0.79856 0.83602 0.77080 1.21675 1.21838 1.20887 1.20935 1.01313 0.89759 0.99596 1.16895 0.85883 0.83010 1.08886 1.91502 1.76427 1.48921 1.94251 0.92571 0.92415 0.88114 0.84631 0.85260 0.87703 0.88009 0.77328 0.91853 0.92621 0.93225 0.90739 0.92120 0.93567 0.94762 0.92936 0.78377 0.93606 0.83802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -4.03 10.36 -19.62 -0.20 -4.23 16 3 C 0.09 1.24 6.69 -39.18 -0.26 0.98 16 4 C -0.18 -2.03 9.04 -39.45 -0.36 -2.38 16 5 C -0.08 -0.86 9.69 -39.59 -0.38 -1.24 16 6 C -0.07 -0.87 4.37 -104.61 -0.46 -1.32 16 7 C -0.10 -1.08 5.83 -29.03 -0.17 -1.25 16 8 C 0.51 7.83 7.79 -10.99 -0.09 7.74 16 9 O -0.52 -10.73 15.70 5.56 0.09 -10.64 16 10 N -0.72 -9.73 4.45 -53.80 -0.24 -9.97 16 11 C 0.14 2.26 2.52 -67.93 -0.17 2.09 16 12 H 0.10 2.22 7.05 -51.93 -0.37 1.86 16 13 C -0.16 -2.14 9.48 37.16 0.35 -1.79 16 14 C -0.13 -1.94 4.29 -26.73 -0.11 -2.05 16 15 C 0.17 3.19 2.84 -67.93 -0.19 3.00 16 16 H 0.05 0.85 7.56 -51.93 -0.39 0.46 16 17 C -0.17 -2.85 9.49 37.15 0.35 -2.50 16 18 N -0.72 -17.58 4.49 -53.43 -0.24 -17.82 16 19 C -0.23 -6.52 9.93 -15.06 -0.15 -6.67 16 20 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 21 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 22 N -0.93 -28.73 13.06 55.49 0.72 -28.01 16 23 Si 0.90 23.18 29.55 -169.99 -5.02 18.15 16 24 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 25 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 26 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 27 C -0.10 -1.42 9.67 -39.54 -0.38 -1.80 16 28 C 0.07 1.13 7.31 -39.29 -0.29 0.85 16 29 F -0.13 -2.25 17.11 2.25 0.04 -2.21 16 30 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 31 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.14 1.10 6.30 -52.48 -0.33 0.77 16 34 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.10 0.98 8.08 -51.93 -0.42 0.56 16 36 H 0.10 0.74 8.08 -51.94 -0.42 0.32 16 37 H 0.39 4.00 8.60 -40.82 -0.35 3.65 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.38 10.10 7.80 -40.82 -0.32 9.78 16 47 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 48 H 0.14 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 404.64 15.07 6.10 6.10 Total: -1.00 -35.93 404.64 -7.76 -43.69 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -7.59 Total: 10.49 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -1.41 Total: -5.56 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.25 Total: -55.79 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.12 Total: -14.87 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -5.02 Total: 18.15 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.93 -7.76 -43.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134909279.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.134 kcal (2) G-P(sol) polarization free energy of solvation -35.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds