Wall clock time and date at job start Tue Mar 31 2020 22:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35962 * 116.99795 * 2 1 4 4 C 1.38656 * 120.06293 * 0.02562 * 3 2 1 5 5 C 1.38179 * 119.96939 * 179.70799 * 4 3 2 6 6 C 1.38260 * 120.09383 * 0.54958 * 5 4 3 7 7 C 1.50702 * 119.93488 * 179.72843 * 6 5 4 8 8 C 1.50703 * 109.46823 * 269.72400 * 7 6 5 9 9 O 1.21277 * 120.00063 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99847 * 180.02562 * 8 7 6 11 11 C 1.46504 * 120.00111 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.46891 * 325.00262 * 11 10 8 13 13 C 1.53006 * 109.46883 * 84.99828 * 11 10 8 14 14 C 1.52997 * 109.47417 * 204.99914 * 11 10 8 15 15 C 1.53003 * 109.46992 * 65.00416 * 14 11 10 16 16 H 1.09002 * 109.46996 * 304.99872 * 15 14 11 17 17 C 1.52995 * 109.46877 * 184.99985 * 15 14 11 18 18 N 1.46501 * 109.47140 * 64.99727 * 15 14 11 19 19 C 1.36936 * 119.99877 * 204.99913 * 18 15 14 20 20 H 1.08006 * 119.99970 * 0.02562 * 19 18 15 21 21 C 1.38808 * 120.00184 * 180.02562 * 19 18 15 22 22 N 1.31625 * 119.99970 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00347 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47410 * 89.99924 * 23 21 19 25 25 H 1.48501 * 109.47167 * 210.00353 * 23 21 19 26 26 H 1.48507 * 109.46825 * 329.99874 * 23 21 19 27 27 C 1.38255 * 120.12736 * 359.44836 * 6 5 4 28 28 C 1.38340 * 120.03006 * 0.27774 * 27 6 5 29 29 F 1.35093 * 120.04608 * 179.97438 * 28 27 6 30 30 H 1.08993 * 109.47372 * 300.00366 * 1 2 3 31 31 H 1.08995 * 109.46866 * 60.00582 * 1 2 3 32 32 H 1.09004 * 109.46925 * 180.02562 * 1 2 3 33 33 H 1.08003 * 120.01450 * 359.97438 * 4 3 2 34 34 H 1.07997 * 119.95443 * 180.29486 * 5 4 3 35 35 H 1.08999 * 109.47106 * 149.73160 * 7 6 5 36 36 H 1.08988 * 109.47426 * 29.72568 * 7 6 5 37 37 H 0.97003 * 120.00265 * 0.02562 * 10 8 7 38 38 H 1.09000 * 109.47050 * 180.02562 * 13 11 10 39 39 H 1.09001 * 109.46801 * 300.00349 * 13 11 10 40 40 H 1.09001 * 109.46998 * 59.99945 * 13 11 10 41 41 H 1.08998 * 109.47097 * 184.99825 * 14 11 10 42 42 H 1.09002 * 109.47223 * 305.00006 * 14 11 10 43 43 H 1.08999 * 109.47475 * 299.99318 * 17 15 14 44 44 H 1.09004 * 109.47493 * 60.00072 * 17 15 14 45 45 H 1.09001 * 109.47176 * 179.97438 * 17 15 14 46 46 H 0.96995 * 120.00007 * 25.00642 * 18 15 14 47 47 H 0.96996 * 120.00124 * 180.02562 * 22 21 19 48 48 H 1.07998 * 119.98490 * 180.25001 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2922 2.3751 0.0005 5 6 1.9215 3.6053 0.0066 6 6 3.3022 3.6778 0.0007 7 6 3.9848 5.0213 0.0012 8 6 4.2121 5.4698 -1.4195 9 8 3.8554 4.7673 -2.3415 10 7 4.8126 6.6510 -1.6653 11 6 5.0342 7.0867 -3.0464 12 1 5.2548 6.2202 -3.6698 13 6 3.7765 7.7840 -3.5691 14 6 6.2132 8.0607 -3.0911 15 6 7.4947 7.3289 -2.6872 16 1 7.3542 6.8610 -1.7128 17 6 8.6504 8.3287 -2.6109 18 7 7.8041 6.2999 -3.6830 19 6 8.5519 5.2084 -3.3300 20 1 8.9133 5.1059 -2.3174 21 6 8.8455 4.2336 -4.2736 22 7 8.4055 4.3586 -5.5078 23 14 9.8649 2.7443 -3.7920 24 1 8.9662 1.6617 -3.3173 25 1 10.6337 2.2686 -4.9701 26 1 10.8056 3.1188 -2.7055 27 6 4.0579 2.5200 0.0002 28 6 3.4333 1.2856 -0.0002 29 9 4.1714 0.1541 -0.0012 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 0.2136 2.3200 0.0005 34 1 1.3340 4.5115 0.0119 35 1 4.9429 4.9419 0.5148 36 1 3.3560 5.7481 0.5154 37 1 5.0989 7.2123 -0.9279 38 1 3.9411 8.1077 -4.5968 39 1 2.9365 7.0900 -3.5373 40 1 3.5558 8.6504 -2.9457 41 1 6.3222 8.4530 -4.1022 42 1 6.0312 8.8835 -2.3997 43 1 8.7910 8.7965 -3.5853 44 1 8.4202 9.0943 -1.8700 45 1 9.5633 7.8075 -2.3227 46 1 7.4793 6.3917 -4.5923 47 1 8.6103 3.6773 -6.1671 48 1 5.1362 2.5793 -0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134909279.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:33 Heat of formation + Delta-G solvation = -117.571452 kcal Electronic energy + Delta-G solvation = -29678.459966 eV Core-core repulsion = 25454.250600 eV Total energy + Delta-G solvation = -4224.209366 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.89798 -41.27666 -40.59231 -38.78974 -38.04189 -35.96966 -34.01178 -33.35216 -31.81489 -31.73058 -30.40047 -29.03170 -27.58923 -27.35402 -25.65092 -23.83655 -23.38311 -22.16262 -21.36676 -21.10719 -19.36860 -19.25632 -18.03636 -17.99819 -17.87811 -17.17189 -17.07345 -16.59903 -16.09531 -15.96943 -15.84549 -15.66572 -15.43749 -15.25046 -15.15826 -14.70542 -14.43911 -14.28779 -14.01786 -13.57596 -13.40526 -13.25174 -13.17570 -13.10975 -12.93681 -12.80042 -12.70003 -12.60977 -12.53000 -12.20694 -12.17490 -12.10091 -12.01931 -11.78089 -11.53061 -11.37613 -10.91714 -10.74486 -9.96016 -9.86831 -9.16086 -8.93470 -7.92258 -5.16624 0.10274 0.16265 1.40502 1.44256 1.49788 1.84960 2.16148 2.28716 2.55535 2.70278 3.19186 3.43102 3.59017 3.71121 3.86555 3.97093 4.02978 4.15232 4.20429 4.24337 4.35226 4.36885 4.44686 4.47841 4.50079 4.60102 4.66468 4.70759 4.74482 4.83663 4.86871 4.88639 4.99486 5.03919 5.08229 5.11896 5.13596 5.29465 5.39909 5.44780 5.47726 5.54356 5.63439 5.66636 5.76995 6.26826 6.31503 6.78761 7.37257 7.52434 8.18976 8.37254 9.31800 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009784 B = 0.003508 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2861.065710 B = 7979.025574 C = 9975.214151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.338 6.338 3 C 0.082 3.918 4 C -0.175 4.175 5 C -0.070 4.070 6 C -0.079 4.079 7 C -0.090 4.090 8 C 0.505 3.495 9 O -0.586 6.586 10 N -0.705 5.705 11 C 0.147 3.853 12 H 0.040 0.960 13 C -0.149 4.149 14 C -0.117 4.117 15 C 0.163 3.837 16 H 0.047 0.953 17 C -0.157 4.157 18 N -0.732 5.732 19 C -0.221 4.221 20 H 0.072 0.928 21 C -0.078 4.078 22 N -0.970 5.970 23 Si 0.956 3.044 24 H -0.300 1.300 25 H -0.296 1.296 26 H -0.265 1.265 27 C -0.117 4.117 28 C 0.030 3.970 29 F -0.153 7.153 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.118 0.882 33 H 0.171 0.829 34 H 0.166 0.834 35 H 0.120 0.880 36 H 0.151 0.849 37 H 0.414 0.586 38 H 0.062 0.938 39 H 0.038 0.962 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.109 0.891 43 H 0.039 0.961 44 H 0.078 0.922 45 H 0.028 0.972 46 H 0.368 0.632 47 H 0.246 0.754 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.803 6.770 17.373 26.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.253 6.253 3 C 0.036 3.964 4 C -0.194 4.194 5 C -0.088 4.088 6 C -0.080 4.080 7 C -0.129 4.129 8 C 0.293 3.707 9 O -0.466 6.466 10 N -0.358 5.358 11 C 0.042 3.958 12 H 0.059 0.941 13 C -0.208 4.208 14 C -0.156 4.156 15 C 0.055 3.945 16 H 0.065 0.935 17 C -0.217 4.217 18 N -0.372 5.372 19 C -0.353 4.353 20 H 0.090 0.910 21 C -0.270 4.270 22 N -0.621 5.621 23 Si 0.786 3.214 24 H -0.228 1.228 25 H -0.223 1.223 26 H -0.189 1.189 27 C -0.136 4.136 28 C 0.010 3.990 29 F -0.132 7.132 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.137 0.863 33 H 0.189 0.811 34 H 0.183 0.817 35 H 0.138 0.862 36 H 0.169 0.831 37 H 0.252 0.748 38 H 0.081 0.919 39 H 0.057 0.943 40 H 0.103 0.897 41 H 0.089 0.911 42 H 0.127 0.873 43 H 0.058 0.942 44 H 0.097 0.903 45 H 0.047 0.953 46 H 0.200 0.800 47 H 0.055 0.945 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -18.834 5.945 16.843 25.956 hybrid contribution 1.097 -1.458 -0.603 1.922 sum -17.737 4.486 16.240 24.463 Atomic orbital electron populations 1.23450 0.75545 1.05905 1.02872 1.86102 1.24337 1.26021 1.88804 1.19164 0.90315 0.86821 1.00069 1.21441 1.01627 0.90412 1.05891 1.21262 0.93279 0.98591 0.95628 1.19310 0.94086 0.93575 1.00998 1.20709 1.04549 0.94644 0.92988 1.21139 0.76901 0.80692 0.91997 1.90744 1.52435 1.55142 1.48267 1.45837 1.60395 1.20754 1.08771 1.20755 0.95079 0.96890 0.83117 0.94120 1.22062 0.96450 1.00529 1.01716 1.22070 0.92458 0.97655 1.03395 1.20547 0.92976 0.88588 0.92359 0.93468 1.22316 0.99166 0.99216 1.00957 1.42620 1.62577 1.22105 1.09858 1.19508 1.22798 0.98096 0.94923 0.91025 1.25381 1.03749 1.01794 0.96048 1.69792 1.52693 1.36385 1.03272 0.85386 0.78599 0.80430 0.76955 1.22841 1.22305 1.18915 1.21041 1.01157 0.90593 1.00807 1.17351 0.87161 0.82793 1.11675 1.91426 1.77094 1.49991 1.94732 0.90399 0.91508 0.86347 0.81127 0.81687 0.86196 0.83120 0.74844 0.91868 0.94326 0.89667 0.91113 0.87276 0.94173 0.90315 0.95285 0.80005 0.94525 0.84987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -8.76 10.36 -93.12 -0.96 -9.73 16 3 C 0.08 2.27 6.69 22.53 0.15 2.42 16 4 C -0.18 -3.56 9.04 22.36 0.20 -3.36 16 5 C -0.07 -1.38 9.69 22.26 0.22 -1.17 16 6 C -0.08 -1.92 4.37 -19.85 -0.09 -2.01 16 7 C -0.09 -1.70 5.83 29.10 0.17 -1.53 16 8 C 0.51 14.83 7.79 87.66 0.68 15.51 16 9 O -0.59 -24.61 15.70 -3.02 -0.05 -24.65 16 10 N -0.71 -17.46 4.45 -442.52 -1.97 -19.43 16 11 C 0.15 4.45 2.52 44.99 0.11 4.56 16 12 H 0.04 1.80 7.05 -2.39 -0.02 1.78 16 13 C -0.15 -3.70 9.48 71.98 0.68 -3.02 16 14 C -0.12 -3.16 4.29 30.59 0.13 -3.03 16 15 C 0.16 5.76 2.84 44.99 0.13 5.89 16 16 H 0.05 1.66 7.56 -2.39 -0.02 1.64 16 17 C -0.16 -4.97 9.49 71.98 0.68 -4.29 16 18 N -0.73 -36.19 4.49 -322.94 -1.45 -37.64 16 19 C -0.22 -12.43 9.93 84.03 0.83 -11.60 16 20 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 21 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 22 N -0.97 -62.32 13.06 21.65 0.28 -62.04 16 23 Si 0.96 49.11 29.55 68.60 2.03 51.13 16 24 H -0.30 -15.79 7.11 99.48 0.71 -15.09 16 25 H -0.30 -15.30 7.11 99.48 0.71 -14.59 16 26 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 27 C -0.12 -3.57 9.67 22.30 0.22 -3.36 16 28 C 0.03 0.98 7.31 22.46 0.16 1.15 16 29 F -0.15 -5.69 17.11 44.97 0.77 -4.92 16 30 H 0.08 0.72 7.66 -2.39 -0.02 0.70 16 31 H 0.07 0.79 7.66 -2.39 -0.02 0.77 16 32 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.17 2.14 6.30 -2.91 -0.02 2.12 16 34 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 35 H 0.12 1.94 8.08 -2.39 -0.02 1.92 16 36 H 0.15 1.37 8.08 -2.39 -0.02 1.35 16 37 H 0.41 6.67 8.60 -92.71 -0.80 5.87 16 38 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.37 20.14 7.80 -92.71 -0.72 19.41 16 47 H 0.25 15.54 8.31 -92.71 -0.77 14.77 16 48 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -85.97 404.64 3.97 -82.00 By element: Atomic # 1 Polarization: 32.51 SS G_CDS: -0.54 Total: 31.97 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: 5.87 Total: -6.70 kcal Atomic # 7 Polarization: -115.97 SS G_CDS: -3.14 Total: -119.10 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -1.01 Total: -34.38 kcal Atomic # 9 Polarization: -5.69 SS G_CDS: 0.77 Total: -4.92 kcal Atomic # 14 Polarization: 49.11 SS G_CDS: 2.03 Total: 51.13 kcal Total: -85.97 3.97 -82.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134909279.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.572 kcal (2) G-P(sol) polarization free energy of solvation -85.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds