Wall clock time and date at job start Tue Mar 31 2020 22:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35955 * 116.99888 * 2 1 4 4 C 1.38659 * 120.06154 * 0.02562 * 3 2 1 5 5 C 1.38186 * 119.96613 * 179.70671 * 4 3 2 6 6 C 1.38259 * 120.09279 * 0.54643 * 5 4 3 7 7 C 1.50706 * 119.93513 * 179.72881 * 6 5 4 8 8 C 1.50699 * 109.46817 * 269.72544 * 7 6 5 9 9 O 1.21282 * 120.00041 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00033 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00165 * 179.97438 * 10 8 7 12 12 H 1.09005 * 109.47029 * 34.99481 * 11 10 8 13 13 C 1.52995 * 109.47133 * 275.00058 * 11 10 8 14 14 C 1.52998 * 109.47169 * 154.99751 * 11 10 8 15 15 C 1.53006 * 109.47223 * 294.99791 * 14 11 10 16 16 H 1.09002 * 109.46714 * 54.99845 * 15 14 11 17 17 C 1.52991 * 109.47212 * 174.99835 * 15 14 11 18 18 N 1.46497 * 109.47097 * 295.00540 * 15 14 11 19 19 C 1.36939 * 120.00177 * 155.00417 * 18 15 14 20 20 H 1.08004 * 119.99997 * 359.97438 * 19 18 15 21 21 C 1.38812 * 120.00284 * 179.97438 * 19 18 15 22 22 N 1.31618 * 119.99723 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99944 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47353 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.46983 * 120.00058 * 23 21 19 26 26 H 1.48509 * 109.46874 * 239.99875 * 23 21 19 27 27 C 1.38253 * 120.12803 * 359.45234 * 6 5 4 28 28 C 1.38334 * 120.03229 * 0.27460 * 27 6 5 29 29 F 1.35096 * 120.05197 * 179.97438 * 28 27 6 30 30 H 1.08999 * 109.46762 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47114 * 299.99756 * 1 2 3 32 32 H 1.09003 * 109.46954 * 60.00277 * 1 2 3 33 33 H 1.07997 * 120.01457 * 359.97438 * 4 3 2 34 34 H 1.07994 * 119.95400 * 180.29550 * 5 4 3 35 35 H 1.09000 * 109.47318 * 29.71923 * 7 6 5 36 36 H 1.09000 * 109.47161 * 149.72554 * 7 6 5 37 37 H 0.96996 * 119.99850 * 359.97438 * 10 8 7 38 38 H 1.09001 * 109.47331 * 180.02562 * 13 11 10 39 39 H 1.09005 * 109.46692 * 299.99629 * 13 11 10 40 40 H 1.09002 * 109.47323 * 59.99756 * 13 11 10 41 41 H 1.08998 * 109.47310 * 55.00043 * 14 11 10 42 42 H 1.09000 * 109.47200 * 175.00190 * 14 11 10 43 43 H 1.08998 * 109.47451 * 300.00700 * 17 15 14 44 44 H 1.09002 * 109.47273 * 60.00352 * 17 15 14 45 45 H 1.09005 * 109.47126 * 180.02562 * 17 15 14 46 46 H 0.97000 * 120.00205 * 334.99097 * 18 15 14 47 47 H 0.97003 * 119.99964 * 180.02562 * 22 21 19 48 48 H 1.08001 * 119.98560 * 180.25452 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3751 0.0005 5 6 1.9216 3.6053 0.0067 6 6 3.3023 3.6776 0.0009 7 6 3.9850 5.0212 0.0014 8 6 4.2124 5.4696 -1.4193 9 8 3.8549 4.7675 -2.3414 10 7 4.8131 6.6508 -1.6652 11 6 5.0347 7.0865 -3.0462 12 1 4.2045 6.7542 -3.6696 13 6 6.3389 6.4811 -3.5689 14 6 5.1270 8.6130 -3.0909 15 6 3.7806 9.2174 -2.6869 16 1 3.4854 8.8281 -1.7125 17 6 3.9076 10.7402 -2.6106 18 7 2.7669 8.8611 -3.6826 19 6 1.4444 8.8223 -3.3297 20 1 1.1486 9.0541 -2.3171 21 6 0.4838 8.4852 -4.2734 22 7 0.8441 8.2033 -5.5075 23 14 -1.3203 8.4316 -3.7917 24 1 -1.4602 8.7863 -2.3565 25 1 -2.0823 9.4017 -4.6184 26 1 -1.8524 7.0636 -4.0172 27 6 4.0579 2.5199 0.0003 28 6 3.4333 1.2855 -0.0001 29 9 4.1713 0.1539 -0.0012 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 0.2137 2.3200 0.0005 34 1 1.3342 4.5115 0.0119 35 1 3.3561 5.7481 0.5155 36 1 4.9430 4.9418 0.5151 37 1 5.0986 7.2125 -0.9277 38 1 6.5041 6.8056 -4.5963 39 1 7.1691 6.8134 -2.9455 40 1 6.2732 5.3936 -3.5371 41 1 5.8990 8.9507 -2.3995 42 1 5.3798 8.9323 -4.1019 43 1 4.6619 11.0053 -1.8697 44 1 4.2028 11.1295 -3.5849 45 1 2.9485 11.1707 -2.3223 46 1 3.0325 8.6528 -4.5920 47 1 0.1728 7.9680 -6.1670 48 1 5.1363 2.5791 -0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134909280.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:38 Heat of formation + Delta-G solvation = -93.667373 kcal Electronic energy + Delta-G solvation = -29631.501036 eV Core-core repulsion = 25408.328229 eV Total energy + Delta-G solvation = -4223.172807 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.78897 -40.28032 -39.47500 -37.75839 -36.66652 -34.40297 -32.48101 -32.01801 -30.80426 -30.54534 -28.60343 -28.22453 -26.56811 -26.25517 -23.61789 -22.87429 -22.31058 -20.97786 -20.14673 -19.68961 -18.42182 -17.31843 -17.04711 -16.88570 -16.75680 -16.20795 -15.76947 -15.11912 -14.97801 -14.92001 -14.72722 -14.34650 -14.13314 -13.91730 -13.67824 -13.63143 -13.14908 -12.94736 -12.69250 -12.40514 -12.31837 -12.17608 -12.03415 -11.79929 -11.72245 -11.66524 -11.53429 -11.22693 -11.17485 -11.01802 -10.84189 -10.60807 -10.40225 -10.20222 -9.87589 -9.61936 -9.50174 -8.97757 -8.87749 -8.65504 -8.18250 -6.90950 -5.72411 -3.00197 1.09059 1.13860 2.98620 3.00117 3.30834 3.43964 3.48069 3.51577 3.71929 4.14301 4.51156 4.61208 4.61929 4.80740 4.95093 5.02997 5.06917 5.13421 5.19133 5.24699 5.30938 5.35749 5.44711 5.50281 5.52622 5.62901 5.71292 5.80182 5.91175 5.96903 5.98668 6.02858 6.08089 6.14911 6.30438 6.38106 6.41135 6.45181 6.53429 6.58381 6.74936 6.83758 6.96120 7.07989 7.14224 7.72421 7.84879 8.45890 8.61383 9.57161 10.15282 10.49225 11.50476 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009756 B = 0.003434 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2869.355072 B = 8152.126682 C =10209.611591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.313 6.313 3 C 0.092 3.908 4 C -0.178 4.178 5 C -0.069 4.069 6 C -0.069 4.069 7 C -0.100 4.100 8 C 0.513 3.487 9 O -0.524 6.524 10 N -0.718 5.718 11 C 0.144 3.856 12 H 0.105 0.895 13 C -0.161 4.161 14 C -0.131 4.131 15 C 0.172 3.828 16 H 0.046 0.954 17 C -0.166 4.166 18 N -0.720 5.720 19 C -0.233 4.233 20 H 0.067 0.933 21 C -0.012 4.012 22 N -0.930 5.930 23 Si 0.901 3.099 24 H -0.282 1.282 25 H -0.293 1.293 26 H -0.292 1.292 27 C -0.102 4.102 28 C 0.067 3.933 29 F -0.136 7.136 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.393 0.607 38 H 0.063 0.937 39 H 0.049 0.951 40 H 0.055 0.945 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.034 0.966 44 H 0.045 0.955 45 H 0.051 0.949 46 H 0.383 0.617 47 H 0.253 0.747 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.845 -8.834 14.762 18.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.226 6.226 3 C 0.046 3.954 4 C -0.197 4.197 5 C -0.087 4.087 6 C -0.069 4.069 7 C -0.140 4.140 8 C 0.298 3.702 9 O -0.399 6.399 10 N -0.370 5.370 11 C 0.040 3.960 12 H 0.123 0.877 13 C -0.219 4.219 14 C -0.169 4.169 15 C 0.062 3.938 16 H 0.064 0.936 17 C -0.226 4.226 18 N -0.362 5.362 19 C -0.365 4.365 20 H 0.085 0.915 21 C -0.208 4.208 22 N -0.579 5.579 23 Si 0.733 3.267 24 H -0.207 1.207 25 H -0.220 1.220 26 H -0.220 1.220 27 C -0.121 4.121 28 C 0.047 3.953 29 F -0.114 7.114 30 H 0.119 0.881 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.156 0.844 34 H 0.152 0.848 35 H 0.124 0.876 36 H 0.119 0.881 37 H 0.227 0.773 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.053 0.947 44 H 0.064 0.936 45 H 0.071 0.929 46 H 0.216 0.784 47 H 0.063 0.937 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.517 -9.595 14.155 18.680 hybrid contribution -1.015 0.252 0.139 1.055 sum 6.502 -9.343 14.294 18.272 Atomic orbital electron populations 1.23114 0.77969 1.04107 1.01707 1.86107 1.21707 1.25943 1.88871 1.18977 0.90796 0.85569 1.00084 1.21101 1.00320 0.91360 1.06875 1.20938 0.93878 0.97605 0.96309 1.19009 0.93247 0.93394 1.01288 1.20643 1.02520 0.95016 0.95808 1.20325 0.77566 0.81574 0.90754 1.90762 1.49301 1.53870 1.45988 1.45964 1.61428 1.20625 1.08936 1.21005 0.98376 0.93885 0.82733 0.87728 1.22181 0.97324 1.01365 1.01031 1.22167 0.98663 0.93769 1.02350 1.20212 0.87947 0.91815 0.93802 0.93647 1.22463 1.00276 0.99891 0.99963 1.42405 1.02261 1.82236 1.09306 1.19186 0.83305 1.38805 0.95183 0.91493 1.24688 0.97704 1.02602 0.95769 1.69655 1.32374 1.53524 1.02317 0.86208 0.86013 0.77173 0.77344 1.20713 1.21980 1.21971 1.20771 1.00676 0.89754 1.00895 1.16832 0.85877 0.82822 1.09750 1.91477 1.76445 1.49089 1.94432 0.88085 0.92462 0.92214 0.84436 0.84751 0.87619 0.88093 0.77328 0.91847 0.93214 0.92575 0.92103 0.90733 0.94736 0.93557 0.92948 0.78359 0.93654 0.84304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -4.03 10.36 -19.60 -0.20 -4.24 16 3 C 0.09 1.25 6.69 -39.18 -0.26 0.99 16 4 C -0.18 -2.21 9.04 -39.44 -0.36 -2.57 16 5 C -0.07 -0.89 9.69 -39.59 -0.38 -1.28 16 6 C -0.07 -0.87 4.37 -104.61 -0.46 -1.33 16 7 C -0.10 -1.08 5.83 -29.03 -0.17 -1.25 16 8 C 0.51 7.81 7.79 -10.99 -0.09 7.73 16 9 O -0.52 -10.71 15.70 5.56 0.09 -10.63 16 10 N -0.72 -9.71 4.45 -53.81 -0.24 -9.95 16 11 C 0.14 2.26 2.52 -67.93 -0.17 2.09 16 12 H 0.10 2.21 7.05 -51.93 -0.37 1.84 16 13 C -0.16 -2.18 9.48 37.16 0.35 -1.83 16 14 C -0.13 -1.93 4.29 -26.73 -0.11 -2.04 16 15 C 0.17 3.15 2.84 -67.93 -0.19 2.96 16 16 H 0.05 0.84 7.56 -51.93 -0.39 0.45 16 17 C -0.17 -2.82 9.49 37.15 0.35 -2.46 16 18 N -0.72 -17.34 4.49 -53.43 -0.24 -17.58 16 19 C -0.23 -6.35 9.93 -15.06 -0.15 -6.50 16 20 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 21 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -28.26 13.06 55.49 0.72 -27.53 16 23 Si 0.90 22.51 29.55 -169.99 -5.02 17.49 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 27 C -0.10 -1.30 9.67 -39.54 -0.38 -1.69 16 28 C 0.07 0.95 7.31 -39.30 -0.29 0.66 16 29 F -0.14 -2.01 17.11 2.25 0.04 -1.97 16 30 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 32 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 33 H 0.14 1.39 6.30 -52.49 -0.33 1.06 16 34 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 35 H 0.11 0.95 8.08 -51.93 -0.42 0.53 16 36 H 0.10 0.76 8.08 -51.93 -0.42 0.34 16 37 H 0.39 3.99 8.60 -40.82 -0.35 3.64 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 46 H 0.38 9.99 7.80 -40.82 -0.32 9.67 16 47 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 48 H 0.14 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 404.64 15.07 6.10 6.10 Total: -1.00 -35.04 404.64 -7.76 -42.80 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -7.59 Total: 11.25 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -1.41 Total: -5.74 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: 0.25 Total: -55.06 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.12 Total: -14.86 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.04 -7.76 -42.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134909280.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.868 kcal (2) G-P(sol) polarization free energy of solvation -35.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds