Wall clock time and date at job start Tue Mar 31 2020 22:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35955 * 116.99888 * 2 1 4 4 C 1.38659 * 120.06154 * 0.02562 * 3 2 1 5 5 C 1.38186 * 119.96613 * 179.70671 * 4 3 2 6 6 C 1.38259 * 120.09279 * 0.54643 * 5 4 3 7 7 C 1.50706 * 119.93513 * 179.72881 * 6 5 4 8 8 C 1.50699 * 109.46817 * 269.72544 * 7 6 5 9 9 O 1.21282 * 120.00041 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00033 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00165 * 179.97438 * 10 8 7 12 12 H 1.09005 * 109.47029 * 34.99481 * 11 10 8 13 13 C 1.52995 * 109.47133 * 275.00058 * 11 10 8 14 14 C 1.52998 * 109.47169 * 154.99751 * 11 10 8 15 15 C 1.53006 * 109.47223 * 294.99791 * 14 11 10 16 16 H 1.09002 * 109.46714 * 54.99845 * 15 14 11 17 17 C 1.52991 * 109.47212 * 174.99835 * 15 14 11 18 18 N 1.46497 * 109.47097 * 295.00540 * 15 14 11 19 19 C 1.36939 * 120.00177 * 155.00417 * 18 15 14 20 20 H 1.08004 * 119.99997 * 359.97438 * 19 18 15 21 21 C 1.38812 * 120.00284 * 179.97438 * 19 18 15 22 22 N 1.31618 * 119.99723 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99944 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47353 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.46983 * 120.00058 * 23 21 19 26 26 H 1.48509 * 109.46874 * 239.99875 * 23 21 19 27 27 C 1.38253 * 120.12803 * 359.45234 * 6 5 4 28 28 C 1.38334 * 120.03229 * 0.27460 * 27 6 5 29 29 F 1.35096 * 120.05197 * 179.97438 * 28 27 6 30 30 H 1.08999 * 109.46762 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47114 * 299.99756 * 1 2 3 32 32 H 1.09003 * 109.46954 * 60.00277 * 1 2 3 33 33 H 1.07997 * 120.01457 * 359.97438 * 4 3 2 34 34 H 1.07994 * 119.95400 * 180.29550 * 5 4 3 35 35 H 1.09000 * 109.47318 * 29.71923 * 7 6 5 36 36 H 1.09000 * 109.47161 * 149.72554 * 7 6 5 37 37 H 0.96996 * 119.99850 * 359.97438 * 10 8 7 38 38 H 1.09001 * 109.47331 * 180.02562 * 13 11 10 39 39 H 1.09005 * 109.46692 * 299.99629 * 13 11 10 40 40 H 1.09002 * 109.47323 * 59.99756 * 13 11 10 41 41 H 1.08998 * 109.47310 * 55.00043 * 14 11 10 42 42 H 1.09000 * 109.47200 * 175.00190 * 14 11 10 43 43 H 1.08998 * 109.47451 * 300.00700 * 17 15 14 44 44 H 1.09002 * 109.47273 * 60.00352 * 17 15 14 45 45 H 1.09005 * 109.47126 * 180.02562 * 17 15 14 46 46 H 0.97000 * 120.00205 * 334.99097 * 18 15 14 47 47 H 0.97003 * 119.99964 * 180.02562 * 22 21 19 48 48 H 1.08001 * 119.98560 * 180.25452 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3751 0.0005 5 6 1.9216 3.6053 0.0067 6 6 3.3023 3.6776 0.0009 7 6 3.9850 5.0212 0.0014 8 6 4.2124 5.4696 -1.4193 9 8 3.8549 4.7675 -2.3414 10 7 4.8131 6.6508 -1.6652 11 6 5.0347 7.0865 -3.0462 12 1 4.2045 6.7542 -3.6696 13 6 6.3389 6.4811 -3.5689 14 6 5.1270 8.6130 -3.0909 15 6 3.7806 9.2174 -2.6869 16 1 3.4854 8.8281 -1.7125 17 6 3.9076 10.7402 -2.6106 18 7 2.7669 8.8611 -3.6826 19 6 1.4444 8.8223 -3.3297 20 1 1.1486 9.0541 -2.3171 21 6 0.4838 8.4852 -4.2734 22 7 0.8441 8.2033 -5.5075 23 14 -1.3203 8.4316 -3.7917 24 1 -1.4602 8.7863 -2.3565 25 1 -2.0823 9.4017 -4.6184 26 1 -1.8524 7.0636 -4.0172 27 6 4.0579 2.5199 0.0003 28 6 3.4333 1.2855 -0.0001 29 9 4.1713 0.1539 -0.0012 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 0.2137 2.3200 0.0005 34 1 1.3342 4.5115 0.0119 35 1 3.3561 5.7481 0.5155 36 1 4.9430 4.9418 0.5151 37 1 5.0986 7.2125 -0.9277 38 1 6.5041 6.8056 -4.5963 39 1 7.1691 6.8134 -2.9455 40 1 6.2732 5.3936 -3.5371 41 1 5.8990 8.9507 -2.3995 42 1 5.3798 8.9323 -4.1019 43 1 4.6619 11.0053 -1.8697 44 1 4.2028 11.1295 -3.5849 45 1 2.9485 11.1707 -2.3223 46 1 3.0325 8.6528 -4.5920 47 1 0.1728 7.9680 -6.1670 48 1 5.1363 2.5791 -0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134909280.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:37 Heat of formation + Delta-G solvation = -117.053144 kcal Electronic energy + Delta-G solvation = -29632.515120 eV Core-core repulsion = 25408.328229 eV Total energy + Delta-G solvation = -4224.186890 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.87131 -41.28051 -40.59502 -38.79196 -38.03746 -35.96123 -33.99624 -33.35455 -31.82735 -31.72365 -30.38729 -29.05051 -27.59879 -27.36419 -25.63203 -23.84016 -23.38665 -22.16358 -21.36315 -21.10285 -19.37025 -19.23577 -18.01672 -17.99681 -17.89559 -17.16828 -17.04979 -16.55161 -16.08970 -16.05089 -15.85005 -15.63958 -15.45909 -15.22235 -15.03456 -14.78337 -14.43440 -14.30721 -14.01978 -13.57848 -13.38216 -13.25607 -13.15961 -13.15041 -12.92826 -12.79101 -12.69638 -12.60597 -12.54187 -12.19249 -12.11789 -12.11265 -12.04345 -11.77734 -11.51527 -11.36883 -10.90224 -10.74567 -9.96214 -9.87007 -9.16839 -8.91665 -7.89199 -5.14311 0.09784 0.15708 1.44211 1.45348 1.54239 1.85347 2.14630 2.27692 2.58422 2.69664 3.16461 3.46096 3.58328 3.70967 3.86381 3.96547 4.03603 4.13010 4.20455 4.24275 4.32331 4.33255 4.45405 4.47382 4.49010 4.60078 4.64707 4.70352 4.73807 4.83407 4.86093 4.87913 4.99756 5.01564 5.08438 5.11714 5.14301 5.28610 5.39849 5.45305 5.48319 5.56395 5.61846 5.67335 5.76872 6.23137 6.33849 6.78745 7.39454 7.52422 8.20653 8.39652 9.35107 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009756 B = 0.003434 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2869.355072 B = 8152.126682 C =10209.611591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.081 3.919 4 C -0.182 4.182 5 C -0.082 4.082 6 C -0.078 4.078 7 C -0.089 4.089 8 C 0.505 3.495 9 O -0.586 6.586 10 N -0.705 5.705 11 C 0.148 3.852 12 H 0.043 0.957 13 C -0.151 4.151 14 C -0.118 4.118 15 C 0.164 3.836 16 H 0.049 0.951 17 C -0.157 4.157 18 N -0.733 5.733 19 C -0.220 4.220 20 H 0.074 0.926 21 C -0.080 4.080 22 N -0.971 5.971 23 Si 0.959 3.041 24 H -0.261 1.261 25 H -0.296 1.296 26 H -0.302 1.302 27 C -0.103 4.103 28 C 0.040 3.960 29 F -0.146 7.146 30 H 0.123 0.877 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.158 0.842 34 H 0.141 0.859 35 H 0.130 0.870 36 H 0.142 0.858 37 H 0.415 0.585 38 H 0.063 0.937 39 H 0.083 0.917 40 H 0.035 0.965 41 H 0.108 0.892 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.038 0.962 45 H 0.029 0.971 46 H 0.368 0.632 47 H 0.245 0.755 48 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.054 -7.469 17.536 21.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.035 3.965 4 C -0.200 4.200 5 C -0.100 4.100 6 C -0.079 4.079 7 C -0.129 4.129 8 C 0.293 3.707 9 O -0.466 6.466 10 N -0.358 5.358 11 C 0.043 3.957 12 H 0.061 0.939 13 C -0.209 4.209 14 C -0.156 4.156 15 C 0.056 3.944 16 H 0.067 0.933 17 C -0.217 4.217 18 N -0.373 5.373 19 C -0.353 4.353 20 H 0.092 0.908 21 C -0.272 4.272 22 N -0.623 5.623 23 Si 0.790 3.210 24 H -0.186 1.186 25 H -0.224 1.224 26 H -0.230 1.230 27 C -0.121 4.121 28 C 0.020 3.980 29 F -0.124 7.124 30 H 0.141 0.859 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.175 0.825 34 H 0.159 0.841 35 H 0.148 0.852 36 H 0.160 0.840 37 H 0.252 0.748 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.054 0.946 41 H 0.126 0.874 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.057 0.943 45 H 0.049 0.951 46 H 0.199 0.801 47 H 0.054 0.946 48 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 8.766 -8.173 17.022 20.818 hybrid contribution -1.346 -0.159 -0.675 1.514 sum 7.420 -8.332 16.347 19.792 Atomic orbital electron populations 1.23417 0.75878 1.05916 1.02506 1.86082 1.23967 1.25859 1.88818 1.19174 0.90956 0.86258 1.00130 1.21343 1.01382 0.90913 1.06392 1.21213 0.94461 0.98051 0.96282 1.19279 0.93354 0.94319 1.00965 1.20703 1.04960 0.94221 0.92980 1.21141 0.76364 0.81207 0.92002 1.90747 1.51879 1.55696 1.48268 1.45835 1.60702 1.20468 1.08756 1.20739 0.97190 0.94667 0.83141 0.93905 1.22075 0.97166 0.99919 1.01768 1.22071 0.97682 0.92528 1.03338 1.20530 0.88312 0.93068 0.92445 0.93256 1.22320 1.00483 0.98001 1.00890 1.42647 1.02526 1.82252 1.09828 1.19574 0.84811 1.35835 0.95048 0.90797 1.25432 1.01614 1.04130 0.96003 1.69818 1.33027 1.56100 1.03389 0.85255 0.81514 0.76275 0.77949 1.18561 1.22395 1.23015 1.21016 1.01707 0.89317 1.00094 1.17202 0.86453 0.83123 1.11232 1.91440 1.76674 1.49653 1.94673 0.85899 0.90817 0.92175 0.82475 0.84074 0.85221 0.84027 0.74835 0.91813 0.89801 0.94559 0.87406 0.91196 0.90402 0.94287 0.95132 0.80075 0.94583 0.82507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -8.62 10.36 -93.04 -0.96 -9.59 16 3 C 0.08 2.23 6.69 22.53 0.15 2.38 16 4 C -0.18 -4.46 9.04 22.36 0.20 -4.26 16 5 C -0.08 -2.06 9.69 22.26 0.22 -1.84 16 6 C -0.08 -1.90 4.37 -19.85 -0.09 -1.98 16 7 C -0.09 -1.68 5.83 29.10 0.17 -1.51 16 8 C 0.51 14.77 7.79 87.66 0.68 15.45 16 9 O -0.59 -24.53 15.70 -3.04 -0.05 -24.58 16 10 N -0.71 -17.42 4.45 -442.53 -1.97 -19.39 16 11 C 0.15 4.48 2.52 44.99 0.11 4.60 16 12 H 0.04 1.87 7.05 -2.38 -0.02 1.86 16 13 C -0.15 -3.87 9.48 71.98 0.68 -3.19 16 14 C -0.12 -3.15 4.29 30.60 0.13 -3.02 16 15 C 0.16 5.67 2.84 44.99 0.13 5.80 16 16 H 0.05 1.67 7.56 -2.39 -0.02 1.65 16 17 C -0.16 -4.88 9.49 71.98 0.68 -4.20 16 18 N -0.73 -35.41 4.49 -322.94 -1.45 -36.86 16 19 C -0.22 -12.01 9.93 84.03 0.83 -11.17 16 20 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 21 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 22 N -0.97 -61.07 13.06 21.65 0.28 -60.78 16 23 Si 0.96 46.90 29.55 68.60 2.03 48.93 16 24 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 25 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 26 H -0.30 -15.11 7.11 99.48 0.71 -14.40 16 27 C -0.10 -2.56 9.67 22.30 0.22 -2.34 16 28 C 0.04 1.13 7.31 22.45 0.16 1.30 16 29 F -0.15 -4.41 17.11 44.97 0.77 -3.64 16 30 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 0.93 7.66 -2.39 -0.02 0.91 16 32 H 0.06 0.95 7.66 -2.39 -0.02 0.93 16 33 H 0.16 3.03 6.30 -2.91 -0.02 3.02 16 34 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 35 H 0.13 1.84 8.08 -2.39 -0.02 1.82 16 36 H 0.14 1.51 8.08 -2.39 -0.02 1.49 16 37 H 0.41 6.64 8.60 -92.71 -0.80 5.84 16 38 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 40 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 46 H 0.37 19.79 7.80 -92.71 -0.72 19.07 16 47 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 48 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -81.34 404.64 3.97 -77.37 By element: Atomic # 1 Polarization: 35.88 SS G_CDS: -0.54 Total: 35.34 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: 5.87 Total: -6.80 kcal Atomic # 7 Polarization: -113.90 SS G_CDS: -3.14 Total: -117.03 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -1.01 Total: -34.17 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.77 Total: -3.64 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -81.34 3.97 -77.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134909280.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.685 kcal (2) G-P(sol) polarization free energy of solvation -81.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds