Wall clock time and date at job start Tue Mar 31 2020 22:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 113.99972 * 2 1 4 4 C 1.50702 * 109.46868 * 180.02562 * 3 2 1 5 5 C 1.37854 * 119.94333 * 359.72221 * 4 3 2 6 6 C 1.39630 * 119.88137 * 179.77228 * 5 4 3 7 7 C 1.47730 * 120.11745 * 180.27465 * 6 5 4 8 8 O 1.21574 * 120.00114 * 355.01567 * 7 6 5 9 9 N 1.34776 * 120.00106 * 175.01244 * 7 6 5 10 10 C 1.46496 * 120.00298 * 185.31824 * 9 7 6 11 11 H 1.09004 * 109.47362 * 327.13898 * 10 9 7 12 12 C 1.52998 * 109.46996 * 87.14068 * 10 9 7 13 13 C 1.53004 * 109.47180 * 207.14021 * 10 9 7 14 14 C 1.52996 * 109.47152 * 65.33276 * 13 10 9 15 15 H 1.08999 * 109.47315 * 305.87761 * 14 13 10 16 16 C 1.53001 * 109.47318 * 65.87411 * 14 13 10 17 17 N 1.46497 * 109.47375 * 185.87713 * 14 13 10 18 18 C 1.36933 * 120.00210 * 157.61562 * 17 14 13 19 19 H 1.08005 * 120.00223 * 4.93319 * 18 17 14 20 20 C 1.38818 * 119.99914 * 184.93448 * 18 17 14 21 21 N 1.31621 * 119.99611 * 184.40209 * 20 18 17 22 22 Si 1.86792 * 120.00052 * 4.39651 * 20 18 17 23 23 H 1.48501 * 109.47264 * 93.54073 * 22 20 18 24 24 H 1.48504 * 109.47147 * 213.53911 * 22 20 18 25 25 H 1.48502 * 109.47174 * 333.53748 * 22 20 18 26 26 C 1.39664 * 119.76208 * 0.52455 * 6 5 4 27 27 C 1.37807 * 119.88290 * 359.72616 * 26 6 5 28 28 C 1.38639 * 119.93911 * 179.97438 * 4 3 2 29 29 F 1.35099 * 119.88058 * 359.97438 * 28 4 3 30 30 H 1.09001 * 109.47068 * 59.99857 * 1 2 3 31 31 H 1.08999 * 109.47523 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47137 * 300.00348 * 1 2 3 33 33 H 1.09003 * 109.47010 * 299.99878 * 3 2 1 34 34 H 1.08991 * 109.47721 * 60.00006 * 3 2 1 35 35 H 1.08008 * 120.05779 * 359.97438 * 5 4 3 36 36 H 0.96999 * 119.99704 * 5.31823 * 9 7 6 37 37 H 1.08998 * 109.47385 * 60.00425 * 12 10 9 38 38 H 1.09004 * 109.46994 * 180.02562 * 12 10 9 39 39 H 1.08996 * 109.47124 * 299.99582 * 12 10 9 40 40 H 1.09001 * 109.46985 * 185.32985 * 13 10 9 41 41 H 1.09004 * 109.46886 * 305.33050 * 13 10 9 42 42 H 1.09004 * 109.46922 * 60.00342 * 16 14 13 43 43 H 1.09002 * 109.47310 * 179.97438 * 16 14 13 44 44 H 1.08993 * 109.47667 * 300.00245 * 16 14 13 45 45 H 0.97003 * 120.00101 * 337.62188 * 17 14 13 46 46 H 0.97002 * 119.99603 * 179.97438 * 21 20 18 47 47 H 1.08010 * 120.05703 * 179.70484 * 26 6 5 48 48 H 1.08003 * 119.94306 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.1041 -0.0588 0.0047 6 6 5.4962 -0.1676 -0.0007 7 6 6.1356 -1.4994 -0.0012 8 8 5.4535 -2.5012 0.0946 9 7 7.4750 -1.6037 -0.1079 10 6 8.0999 -2.9235 -0.2257 11 1 7.5187 -3.6525 0.3392 12 6 8.1443 -3.3371 -1.6980 13 6 9.5239 -2.8651 0.3308 14 6 9.4730 -2.5820 1.8335 15 1 8.8857 -1.6818 2.0140 16 6 8.8255 -3.7663 2.5540 17 7 10.8337 -2.3870 2.3401 18 6 11.0389 -1.6898 3.5006 19 1 10.1951 -1.3524 4.0844 20 6 12.3314 -1.4166 3.9269 21 7 12.5309 -0.8231 5.0847 22 14 13.7876 -1.8913 2.8576 23 1 14.1716 -0.7384 2.0040 24 1 14.9338 -2.2706 3.7222 25 1 13.4149 -3.0424 1.9965 26 6 6.2818 0.9871 -0.0004 27 6 5.6802 2.2269 -0.0005 28 6 4.2972 2.3293 -0.0013 29 9 3.7124 3.5472 -0.0019 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 1.6887 1.8464 0.8899 35 1 3.4919 -0.9486 0.0097 36 1 8.0253 -0.8050 -0.1066 37 1 8.7255 -2.6083 -2.2628 38 1 8.6088 -4.3193 -1.7856 39 1 7.1298 -3.3788 -2.0944 40 1 10.0211 -3.8195 0.1576 41 1 10.0774 -2.0708 -0.1701 42 1 9.4129 -4.6666 2.3736 43 1 8.7896 -3.5648 3.6246 44 1 7.8131 -3.9115 2.1772 45 1 11.5894 -2.7517 1.8534 46 1 13.4341 -0.6325 5.3827 47 1 7.3591 0.9084 0.0002 48 1 6.2869 3.1205 0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135460751.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:53 Heat of formation + Delta-G solvation = -94.192026 kcal Electronic energy + Delta-G solvation = -29169.830755 eV Core-core repulsion = 24946.635197 eV Total energy + Delta-G solvation = -4223.195558 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.31270 -40.43884 -39.02201 -37.84031 -36.95602 -34.80726 -32.90528 -32.08675 -31.38469 -30.36731 -29.06235 -27.65721 -26.40103 -25.90083 -24.33487 -23.44875 -22.40919 -21.30551 -20.41291 -19.82281 -18.25492 -17.78239 -17.50483 -17.01412 -16.53118 -16.28648 -15.81895 -15.75365 -15.51855 -15.16572 -14.63913 -14.51482 -14.33817 -14.11426 -13.71266 -13.48187 -13.36524 -13.31053 -13.20002 -12.74666 -12.61786 -12.56718 -12.17381 -12.15059 -11.99793 -11.71709 -11.67305 -11.36577 -11.29484 -10.97633 -10.67999 -10.54176 -10.28219 -10.20558 -9.96554 -9.94043 -9.60156 -9.28515 -9.10285 -8.93153 -8.88236 -7.26331 -5.77809 -3.13081 0.41339 0.89212 2.60184 3.11618 3.21052 3.34875 3.37990 3.44125 3.53348 3.84023 4.23256 4.48858 4.55186 4.57658 4.77416 4.78818 4.81874 4.88507 5.01314 5.05017 5.06560 5.15329 5.29351 5.31381 5.40097 5.47839 5.55175 5.62039 5.64497 5.70810 5.75371 5.84710 5.87932 5.96989 5.99046 6.11688 6.18500 6.25147 6.40756 6.45151 6.54182 6.60847 6.70818 6.85460 7.05445 7.50908 8.00840 8.20241 8.41744 9.21293 9.93574 10.14179 11.40619 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013359 B = 0.002570 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.494606 B =10891.899242 C =11868.824824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.107 3.893 4 C -0.136 4.136 5 C -0.010 4.010 6 C -0.142 4.142 7 C 0.562 3.438 8 O -0.535 6.535 9 N -0.714 5.714 10 C 0.141 3.859 11 H 0.098 0.902 12 C -0.162 4.162 13 C -0.137 4.137 14 C 0.178 3.822 15 H 0.053 0.947 16 C -0.167 4.167 17 N -0.751 5.751 18 C -0.240 4.240 19 H 0.088 0.912 20 C 0.003 3.997 21 N -0.934 5.934 22 Si 0.888 3.112 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.278 1.278 26 C -0.054 4.054 27 C -0.156 4.156 28 C 0.125 3.875 29 F -0.134 7.134 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.044 0.956 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.156 0.844 36 H 0.401 0.599 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.045 0.955 43 H 0.055 0.945 44 H 0.042 0.958 45 H 0.361 0.639 46 H 0.259 0.741 47 H 0.141 0.859 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.318 4.290 -16.136 26.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C 0.031 3.969 4 C -0.137 4.137 5 C -0.029 4.029 6 C -0.145 4.145 7 C 0.349 3.651 8 O -0.413 6.413 9 N -0.366 5.366 10 C 0.037 3.963 11 H 0.115 0.885 12 C -0.220 4.220 13 C -0.176 4.176 14 C 0.069 3.931 15 H 0.071 0.929 16 C -0.227 4.227 17 N -0.395 5.395 18 C -0.370 4.370 19 H 0.106 0.894 20 C -0.193 4.193 21 N -0.582 5.582 22 Si 0.719 3.281 23 H -0.213 1.213 24 H -0.219 1.219 25 H -0.205 1.205 26 C -0.073 4.073 27 C -0.175 4.175 28 C 0.105 3.895 29 F -0.113 7.113 30 H 0.061 0.939 31 H 0.109 0.891 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.174 0.826 36 H 0.236 0.764 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.194 0.806 46 H 0.069 0.931 47 H 0.159 0.841 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -20.718 3.576 -15.866 26.339 hybrid contribution 1.226 0.622 -0.518 1.469 sum -19.493 4.199 -16.384 25.808 Atomic orbital electron populations 1.22781 0.80257 1.03261 1.00138 1.87881 1.20207 1.26663 1.95502 1.21074 0.88944 0.85555 1.01327 1.19610 0.95111 0.92532 1.06480 1.20995 0.93070 0.97522 0.91309 1.20101 0.94296 0.93471 1.06667 1.18059 0.82361 0.88368 0.76352 1.90779 1.63177 1.37827 1.49517 1.46005 1.06448 1.10063 1.74069 1.21093 0.94274 0.84672 0.96270 0.88457 1.22182 1.02089 1.01644 0.96081 1.22237 0.94594 1.02900 0.97847 1.20163 0.87301 0.96187 0.89494 0.92904 1.22446 0.98790 0.99615 1.01835 1.42877 1.02004 1.66285 1.28313 1.19051 0.93706 1.26646 0.97595 0.89391 1.24710 0.96981 1.00562 0.97051 1.69717 1.20615 1.47689 1.20165 0.86501 0.83540 0.78012 0.80094 1.21255 1.21879 1.20490 1.21274 1.00440 0.90870 0.94728 1.21037 0.92374 0.99501 1.04579 1.17623 0.91178 0.79312 1.01356 1.91507 1.84606 1.41659 1.93516 0.93873 0.89136 0.93786 0.91509 0.91400 0.82639 0.76353 0.92502 0.91512 0.92420 0.90536 0.91251 0.93606 0.92563 0.93907 0.80550 0.93112 0.84146 0.83654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.38 -3.76 9.17 -35.23 -0.32 -4.09 16 3 C 0.11 0.94 5.90 36.01 0.21 1.15 16 4 C -0.14 -1.42 5.88 -104.61 -0.62 -2.04 16 5 C -0.01 -0.12 8.92 -39.20 -0.35 -0.47 16 6 C -0.14 -1.68 5.87 -104.97 -0.62 -2.30 16 7 C 0.56 7.72 7.74 -12.38 -0.10 7.62 16 8 O -0.54 -9.04 15.95 5.30 0.08 -8.96 16 9 N -0.71 -8.69 4.38 -54.79 -0.24 -8.93 16 10 C 0.14 1.79 2.53 -67.93 -0.17 1.62 16 11 H 0.10 1.41 5.66 -51.93 -0.29 1.11 16 12 C -0.16 -1.74 9.50 37.16 0.35 -1.39 16 13 C -0.14 -1.92 4.40 -26.73 -0.12 -2.04 16 14 C 0.18 3.25 2.91 -67.93 -0.20 3.06 16 15 H 0.05 1.01 7.57 -51.93 -0.39 0.62 16 16 C -0.17 -3.01 9.24 37.16 0.34 -2.67 16 17 N -0.75 -17.14 4.93 -53.43 -0.26 -17.40 16 18 C -0.24 -6.63 10.39 -15.06 -0.16 -6.79 16 19 H 0.09 2.64 8.06 -52.48 -0.42 2.21 16 20 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 21 N -0.93 -29.09 13.97 55.49 0.78 -28.32 16 22 Si 0.89 21.78 27.98 -169.99 -4.76 17.02 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 25 H -0.28 -6.36 6.19 56.52 0.35 -6.01 16 26 C -0.05 -0.53 9.53 -39.21 -0.37 -0.90 16 27 C -0.16 -1.43 10.01 -39.58 -0.40 -1.83 16 28 C 0.12 1.25 7.25 -39.27 -0.28 0.96 16 29 F -0.13 -1.32 16.79 2.25 0.04 -1.29 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.16 2.01 6.59 -52.48 -0.35 1.66 16 36 H 0.40 4.18 6.67 -40.82 -0.27 3.90 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 44 H 0.04 0.70 6.49 -51.93 -0.34 0.36 16 45 H 0.36 8.10 5.52 -40.82 -0.23 7.88 16 46 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 47 H 0.14 1.10 6.42 -52.48 -0.34 0.77 16 48 H 0.15 1.04 8.06 -52.48 -0.42 0.62 16 LS Contribution 397.22 15.07 5.99 5.99 Total: -1.00 -33.61 397.22 -7.46 -41.07 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -7.31 Total: 9.62 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -1.45 Total: -4.71 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: 0.27 Total: -54.65 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -0.24 Total: -13.05 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.76 Total: 17.02 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.61 -7.46 -41.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135460751.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.127 kcal (2) G-P(sol) polarization free energy of solvation -33.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds