Wall clock time and date at job start Tue Mar 31 2020 22:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 113.99972 * 2 1 4 4 C 1.50702 * 109.46868 * 180.02562 * 3 2 1 5 5 C 1.37854 * 119.94333 * 359.72221 * 4 3 2 6 6 C 1.39630 * 119.88137 * 179.77228 * 5 4 3 7 7 C 1.47730 * 120.11745 * 180.27465 * 6 5 4 8 8 O 1.21574 * 120.00114 * 355.01567 * 7 6 5 9 9 N 1.34776 * 120.00106 * 175.01244 * 7 6 5 10 10 C 1.46496 * 120.00298 * 185.31824 * 9 7 6 11 11 H 1.09004 * 109.47362 * 327.13898 * 10 9 7 12 12 C 1.52998 * 109.46996 * 87.14068 * 10 9 7 13 13 C 1.53004 * 109.47180 * 207.14021 * 10 9 7 14 14 C 1.52996 * 109.47152 * 65.33276 * 13 10 9 15 15 H 1.08999 * 109.47315 * 305.87761 * 14 13 10 16 16 C 1.53001 * 109.47318 * 65.87411 * 14 13 10 17 17 N 1.46497 * 109.47375 * 185.87713 * 14 13 10 18 18 C 1.36933 * 120.00210 * 157.61562 * 17 14 13 19 19 H 1.08005 * 120.00223 * 4.93319 * 18 17 14 20 20 C 1.38818 * 119.99914 * 184.93448 * 18 17 14 21 21 N 1.31621 * 119.99611 * 184.40209 * 20 18 17 22 22 Si 1.86792 * 120.00052 * 4.39651 * 20 18 17 23 23 H 1.48501 * 109.47264 * 93.54073 * 22 20 18 24 24 H 1.48504 * 109.47147 * 213.53911 * 22 20 18 25 25 H 1.48502 * 109.47174 * 333.53748 * 22 20 18 26 26 C 1.39664 * 119.76208 * 0.52455 * 6 5 4 27 27 C 1.37807 * 119.88290 * 359.72616 * 26 6 5 28 28 C 1.38639 * 119.93911 * 179.97438 * 4 3 2 29 29 F 1.35099 * 119.88058 * 359.97438 * 28 4 3 30 30 H 1.09001 * 109.47068 * 59.99857 * 1 2 3 31 31 H 1.08999 * 109.47523 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47137 * 300.00348 * 1 2 3 33 33 H 1.09003 * 109.47010 * 299.99878 * 3 2 1 34 34 H 1.08991 * 109.47721 * 60.00006 * 3 2 1 35 35 H 1.08008 * 120.05779 * 359.97438 * 5 4 3 36 36 H 0.96999 * 119.99704 * 5.31823 * 9 7 6 37 37 H 1.08998 * 109.47385 * 60.00425 * 12 10 9 38 38 H 1.09004 * 109.46994 * 180.02562 * 12 10 9 39 39 H 1.08996 * 109.47124 * 299.99582 * 12 10 9 40 40 H 1.09001 * 109.46985 * 185.32985 * 13 10 9 41 41 H 1.09004 * 109.46886 * 305.33050 * 13 10 9 42 42 H 1.09004 * 109.46922 * 60.00342 * 16 14 13 43 43 H 1.09002 * 109.47310 * 179.97438 * 16 14 13 44 44 H 1.08993 * 109.47667 * 300.00245 * 16 14 13 45 45 H 0.97003 * 120.00101 * 337.62188 * 17 14 13 46 46 H 0.97002 * 119.99603 * 179.97438 * 21 20 18 47 47 H 1.08010 * 120.05703 * 179.70484 * 26 6 5 48 48 H 1.08003 * 119.94306 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.1041 -0.0588 0.0047 6 6 5.4962 -0.1676 -0.0007 7 6 6.1356 -1.4994 -0.0012 8 8 5.4535 -2.5012 0.0946 9 7 7.4750 -1.6037 -0.1079 10 6 8.0999 -2.9235 -0.2257 11 1 7.5187 -3.6525 0.3392 12 6 8.1443 -3.3371 -1.6980 13 6 9.5239 -2.8651 0.3308 14 6 9.4730 -2.5820 1.8335 15 1 8.8857 -1.6818 2.0140 16 6 8.8255 -3.7663 2.5540 17 7 10.8337 -2.3870 2.3401 18 6 11.0389 -1.6898 3.5006 19 1 10.1951 -1.3524 4.0844 20 6 12.3314 -1.4166 3.9269 21 7 12.5309 -0.8231 5.0847 22 14 13.7876 -1.8913 2.8576 23 1 14.1716 -0.7384 2.0040 24 1 14.9338 -2.2706 3.7222 25 1 13.4149 -3.0424 1.9965 26 6 6.2818 0.9871 -0.0004 27 6 5.6802 2.2269 -0.0005 28 6 4.2972 2.3293 -0.0013 29 9 3.7124 3.5472 -0.0019 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 1.6887 1.8464 0.8899 35 1 3.4919 -0.9486 0.0097 36 1 8.0253 -0.8050 -0.1066 37 1 8.7255 -2.6083 -2.2628 38 1 8.6088 -4.3193 -1.7856 39 1 7.1298 -3.3788 -2.0944 40 1 10.0211 -3.8195 0.1576 41 1 10.0774 -2.0708 -0.1701 42 1 9.4129 -4.6666 2.3736 43 1 8.7896 -3.5648 3.6246 44 1 7.8131 -3.9115 2.1772 45 1 11.5894 -2.7517 1.8534 46 1 13.4341 -0.6325 5.3827 47 1 7.3591 0.9084 0.0002 48 1 6.2869 3.1205 0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135460751.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:52 Heat of formation + Delta-G solvation = -116.007224 kcal Electronic energy + Delta-G solvation = -29170.776733 eV Core-core repulsion = 24946.635197 eV Total energy + Delta-G solvation = -4224.141536 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.09392 -41.41373 -39.89640 -38.64929 -38.22479 -36.29071 -34.20278 -33.46865 -32.45653 -31.48769 -30.60682 -28.27634 -27.64860 -26.56332 -25.62863 -24.97517 -23.18876 -22.50279 -21.55631 -21.19700 -19.71494 -18.97485 -18.52478 -17.88697 -17.22439 -17.18085 -16.80635 -16.57476 -16.45891 -16.26632 -16.15126 -15.81078 -15.37992 -15.22084 -15.06572 -14.62664 -14.46253 -14.21644 -14.13870 -14.00698 -13.87161 -13.52048 -13.42561 -13.29804 -12.97718 -12.94851 -12.80187 -12.70045 -12.28201 -12.20729 -12.10478 -12.04100 -11.81106 -11.57235 -11.50704 -11.06310 -10.93763 -10.90900 -10.16029 -10.04304 -9.73870 -9.28054 -7.98676 -5.32025 -0.44119 0.09426 1.40760 1.45392 1.52725 1.65910 2.13299 2.52327 2.59352 2.62376 3.05121 3.32055 3.44455 3.50638 3.66764 3.75288 4.00139 4.03467 4.10889 4.16768 4.23251 4.30380 4.33745 4.46599 4.50469 4.55715 4.58708 4.61455 4.66333 4.81697 4.84561 4.85517 4.92911 4.96158 4.96946 5.05373 5.07437 5.12782 5.16303 5.34042 5.40092 5.47312 5.60304 5.67002 5.82225 6.11645 6.25648 6.51931 7.12994 7.18033 7.89125 8.09998 9.23146 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013359 B = 0.002570 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.494606 B =10891.899242 C =11868.824824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.105 3.895 4 C -0.140 4.140 5 C -0.024 4.024 6 C -0.156 4.156 7 C 0.560 3.440 8 O -0.575 6.575 9 N -0.707 5.707 10 C 0.144 3.856 11 H 0.079 0.921 12 C -0.154 4.154 13 C -0.123 4.123 14 C 0.172 3.828 15 H 0.042 0.958 16 C -0.160 4.160 17 N -0.750 5.750 18 C -0.224 4.224 19 H 0.049 0.951 20 C -0.068 4.068 21 N -0.987 5.987 22 Si 0.961 3.039 23 H -0.278 1.278 24 H -0.302 1.302 25 H -0.247 1.247 26 C -0.051 4.051 27 C -0.151 4.151 28 C 0.124 3.876 29 F -0.132 7.132 30 H 0.057 0.943 31 H 0.095 0.905 32 H 0.053 0.947 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.138 0.862 36 H 0.410 0.590 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.047 0.953 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.055 0.945 43 H 0.023 0.977 44 H 0.058 0.942 45 H 0.368 0.632 46 H 0.256 0.744 47 H 0.161 0.839 48 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.640 4.535 -18.770 27.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C 0.029 3.971 4 C -0.141 4.141 5 C -0.043 4.043 6 C -0.159 4.159 7 C 0.348 3.652 8 O -0.456 6.456 9 N -0.359 5.359 10 C 0.040 3.960 11 H 0.097 0.903 12 C -0.212 4.212 13 C -0.161 4.161 14 C 0.064 3.936 15 H 0.060 0.940 16 C -0.219 4.219 17 N -0.395 5.395 18 C -0.356 4.356 19 H 0.067 0.933 20 C -0.259 4.259 21 N -0.638 5.638 22 Si 0.789 3.211 23 H -0.204 1.204 24 H -0.230 1.230 25 H -0.171 1.171 26 C -0.069 4.069 27 C -0.169 4.169 28 C 0.104 3.896 29 F -0.110 7.110 30 H 0.075 0.925 31 H 0.114 0.886 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.156 0.844 36 H 0.248 0.752 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.066 0.934 40 H 0.110 0.890 41 H 0.102 0.898 42 H 0.074 0.926 43 H 0.042 0.958 44 H 0.077 0.923 45 H 0.202 0.798 46 H 0.065 0.935 47 H 0.178 0.822 48 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -20.069 3.812 -18.551 27.594 hybrid contribution 0.859 0.578 0.361 1.096 sum -19.210 4.389 -18.191 26.818 Atomic orbital electron populations 1.22967 0.78686 1.04064 1.01308 1.87855 1.22052 1.27385 1.95714 1.21181 0.87953 0.85499 1.02440 1.19783 0.96245 0.92153 1.05926 1.20885 0.93143 0.97599 0.92631 1.20039 0.94451 0.93266 1.08171 1.18356 0.82604 0.88649 0.75596 1.90753 1.64052 1.39218 1.51547 1.45971 1.06116 1.10482 1.73283 1.21031 0.93003 0.84457 0.97520 0.90344 1.22105 1.01959 1.02878 0.94241 1.22093 0.95694 1.04228 0.94109 1.20359 0.84905 0.95758 0.92542 0.94030 1.22342 1.00021 0.99850 0.99718 1.42838 1.04054 1.65637 1.26926 1.18953 0.92501 1.25692 0.98418 0.93299 1.25568 1.00356 1.01467 0.98550 1.69915 1.21112 1.50136 1.22628 0.85315 0.78695 0.78846 0.78276 1.20425 1.22957 1.17147 1.21462 1.01263 0.90273 0.93929 1.21330 0.92263 1.00148 1.03191 1.17712 0.91567 0.79183 1.01110 1.91515 1.84655 1.41409 1.93458 0.92469 0.88629 0.92800 0.89997 0.90455 0.84448 0.75187 0.90934 0.90088 0.93424 0.89011 0.89793 0.92640 0.95766 0.92329 0.79824 0.93500 0.82163 0.81160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -8.10 9.17 -148.98 -1.37 -9.47 16 3 C 0.11 1.79 5.90 71.24 0.42 2.21 16 4 C -0.14 -2.87 5.88 -19.86 -0.12 -2.99 16 5 C -0.02 -0.57 8.92 22.51 0.20 -0.37 16 6 C -0.16 -3.67 5.87 -20.09 -0.12 -3.79 16 7 C 0.56 15.39 7.74 86.75 0.67 16.06 16 8 O -0.57 -19.97 15.95 -3.95 -0.06 -20.03 16 9 N -0.71 -16.28 4.38 -445.51 -1.95 -18.23 16 10 C 0.14 3.37 2.53 44.99 0.11 3.49 16 11 H 0.08 2.18 5.66 -2.39 -0.01 2.17 16 12 C -0.15 -2.88 9.50 71.98 0.68 -2.20 16 13 C -0.12 -3.07 4.40 30.59 0.13 -2.94 16 14 C 0.17 6.08 2.91 44.99 0.13 6.21 16 15 H 0.04 1.57 7.57 -2.39 -0.02 1.55 16 16 C -0.16 -5.67 9.24 71.98 0.66 -5.01 16 17 N -0.75 -33.06 4.93 -322.95 -1.59 -34.65 16 18 C -0.22 -12.50 10.39 84.04 0.87 -11.62 16 19 H 0.05 3.05 8.06 -2.91 -0.02 3.03 16 20 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 21 N -0.99 -62.95 13.97 21.65 0.30 -62.64 16 22 Si 0.96 44.20 27.98 68.60 1.92 46.12 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 25 H -0.25 -9.94 6.19 99.48 0.62 -9.33 16 26 C -0.05 -0.91 9.53 22.51 0.21 -0.70 16 27 C -0.15 -2.46 10.01 22.27 0.22 -2.24 16 28 C 0.12 2.30 7.25 22.47 0.16 2.46 16 29 F -0.13 -2.37 16.79 44.97 0.76 -1.61 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 35 H 0.14 3.81 6.59 -2.91 -0.02 3.79 16 36 H 0.41 7.72 6.67 -92.71 -0.62 7.10 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 39 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.06 1.89 6.49 -2.39 -0.02 1.87 16 45 H 0.37 15.29 5.52 -92.71 -0.51 14.78 16 46 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 47 H 0.16 2.14 6.42 -2.91 -0.02 2.12 16 48 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -74.85 397.22 3.74 -71.11 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: -0.24 Total: 32.79 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: 5.97 Total: -3.37 kcal Atomic # 7 Polarization: -112.29 SS G_CDS: -3.24 Total: -115.53 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -1.43 Total: -29.50 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.76 Total: -1.61 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.92 Total: 46.12 kcal Total: -74.85 3.74 -71.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135460751.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.897 kcal (2) G-P(sol) polarization free energy of solvation -74.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds