Wall clock time and date at job start Tue Mar 31 2020 22:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 114.00195 * 2 1 4 4 C 1.50695 * 109.47171 * 180.02562 * 3 2 1 5 5 C 1.37861 * 119.94246 * 0.27661 * 4 3 2 6 6 C 1.39630 * 119.88066 * 180.27800 * 5 4 3 7 7 C 1.47718 * 120.12034 * 179.72353 * 6 5 4 8 8 O 1.21573 * 119.99817 * 359.72241 * 7 6 5 9 9 N 1.34773 * 120.00219 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00431 * 179.72299 * 9 7 6 11 11 H 1.09008 * 109.46846 * 325.00097 * 10 9 7 12 12 C 1.52996 * 109.47098 * 85.00044 * 10 9 7 13 13 C 1.52998 * 109.47391 * 205.00423 * 10 9 7 14 14 C 1.53004 * 109.47475 * 64.99845 * 13 10 9 15 15 H 1.09000 * 109.46769 * 305.00527 * 14 13 10 16 16 C 1.52993 * 109.47475 * 185.00092 * 14 13 10 17 17 N 1.46495 * 109.46952 * 64.99640 * 14 13 10 18 18 C 1.36940 * 120.00141 * 204.99799 * 17 14 13 19 19 H 1.07995 * 119.99974 * 0.02562 * 18 17 14 20 20 C 1.38815 * 120.00287 * 180.02562 * 18 17 14 21 21 N 1.31622 * 119.99912 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00056 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47446 * 90.00228 * 22 20 18 24 24 H 1.48507 * 109.47016 * 210.00040 * 22 20 18 25 25 H 1.48503 * 109.47212 * 329.99797 * 22 20 18 26 26 C 1.39671 * 119.75963 * 359.44549 * 6 5 4 27 27 C 1.37817 * 119.88584 * 0.27752 * 26 6 5 28 28 C 1.38639 * 119.94002 * 180.02562 * 4 3 2 29 29 F 1.35099 * 119.87757 * 0.02562 * 28 4 3 30 30 H 1.08995 * 109.46853 * 59.99691 * 1 2 3 31 31 H 1.08996 * 109.46897 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46898 * 299.99891 * 1 2 3 33 33 H 1.09002 * 109.46874 * 59.99936 * 3 2 1 34 34 H 1.09004 * 109.47180 * 300.00154 * 3 2 1 35 35 H 1.07995 * 120.05663 * 0.02562 * 5 4 3 36 36 H 0.97000 * 120.00112 * 359.72737 * 9 7 6 37 37 H 1.09004 * 109.47132 * 299.99933 * 12 10 9 38 38 H 1.08994 * 109.47099 * 60.00402 * 12 10 9 39 39 H 1.09003 * 109.47061 * 180.02562 * 12 10 9 40 40 H 1.09000 * 109.47070 * 184.99798 * 13 10 9 41 41 H 1.09001 * 109.47293 * 304.99957 * 13 10 9 42 42 H 1.09005 * 109.46828 * 300.00273 * 16 14 13 43 43 H 1.09001 * 109.47007 * 59.99797 * 16 14 13 44 44 H 1.08993 * 109.47747 * 179.97438 * 16 14 13 45 45 H 0.97008 * 120.00370 * 25.00654 * 17 14 13 46 46 H 0.96997 * 120.00469 * 179.97438 * 21 20 18 47 47 H 1.08007 * 120.05927 * 180.29652 * 26 6 5 48 48 H 1.07998 * 119.94257 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.1042 -0.0588 -0.0069 6 6 5.4962 -0.1676 -0.0016 7 6 6.1357 -1.4992 -0.0021 8 8 5.4497 -2.5029 -0.0020 9 7 7.4795 -1.6015 0.0025 10 6 8.1137 -2.9221 0.0082 11 1 7.5102 -3.6124 0.5977 12 6 8.2258 -3.4402 -1.4270 13 6 9.5110 -2.8143 0.6221 14 6 9.3918 -2.4162 2.0946 15 1 8.8089 -1.4988 2.1769 16 6 10.7884 -2.1869 2.6756 17 7 8.7237 -3.4875 2.8375 18 6 8.0517 -3.2014 3.9959 19 1 8.0139 -2.1859 4.3616 20 6 7.4190 -4.2166 4.7002 21 7 7.4654 -5.4543 4.2548 22 14 6.5017 -3.8262 6.2799 23 1 5.0874 -3.5024 5.9640 24 1 6.5500 -5.0033 7.1841 25 1 7.1387 -2.6627 6.9476 26 6 6.2819 0.9872 -0.0017 27 6 5.6802 2.2271 -0.0013 28 6 4.2972 2.3294 -0.0002 29 9 3.7124 3.5472 0.0013 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.4920 -0.9485 -0.0117 36 1 8.0269 -0.8007 0.0022 37 1 7.2303 -3.5171 -1.8643 38 1 8.8292 -2.7499 -2.0163 39 1 8.6972 -4.4230 -1.4227 40 1 10.0166 -3.7769 0.5458 41 1 10.0857 -2.0584 0.0868 42 1 11.3713 -3.1043 2.5932 43 1 11.2855 -1.3897 2.1228 44 1 10.7036 -1.9028 3.7245 45 1 8.7573 -4.3996 2.5090 46 1 7.0236 -6.1639 4.7471 47 1 7.3591 0.9086 -0.0025 48 1 6.2869 3.1206 -0.0018 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135460753.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:01 Heat of formation + Delta-G solvation = -97.027875 kcal Electronic energy + Delta-G solvation = -29692.373126 eV Core-core repulsion = 25469.054597 eV Total energy + Delta-G solvation = -4223.318530 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.22415 -40.20524 -38.80489 -37.67831 -36.68978 -34.46053 -32.71967 -31.99727 -31.23230 -30.07247 -28.55612 -27.52492 -26.30505 -25.76464 -24.06287 -23.52271 -22.27990 -21.16712 -20.16114 -19.69858 -18.09063 -17.58029 -17.12421 -16.89454 -16.41173 -16.06993 -15.65654 -15.63609 -15.34773 -14.82253 -14.62445 -14.34527 -13.98969 -13.89570 -13.60658 -13.36901 -13.24980 -13.19544 -12.96257 -12.71267 -12.45477 -12.18317 -12.04543 -11.90583 -11.70683 -11.58507 -11.52818 -11.22407 -11.00543 -10.78096 -10.58424 -10.39088 -10.18867 -10.14458 -9.86313 -9.63169 -9.56943 -9.16053 -8.89805 -8.83123 -8.64407 -6.87340 -5.68259 -2.96080 0.56251 1.00853 2.82034 3.34256 3.38366 3.49492 3.54245 3.55607 3.77448 3.94240 4.34887 4.58030 4.66763 4.76485 4.88885 4.90582 5.00762 5.12968 5.14242 5.17639 5.18817 5.42183 5.45587 5.50957 5.54292 5.66084 5.71508 5.72830 5.82801 5.91833 5.97402 6.03161 6.05993 6.14441 6.16019 6.31593 6.39225 6.46679 6.57094 6.60297 6.74391 6.83663 6.85386 6.95538 7.10152 7.77135 7.79689 8.50074 8.53716 9.61581 10.18740 10.52824 11.54527 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009068 B = 0.003485 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3087.066524 B = 8031.440158 C = 9258.940816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.107 3.893 4 C -0.134 4.134 5 C -0.010 4.010 6 C -0.134 4.134 7 C 0.558 3.442 8 O -0.523 6.523 9 N -0.711 5.711 10 C 0.144 3.856 11 H 0.107 0.893 12 C -0.161 4.161 13 C -0.131 4.131 14 C 0.171 3.829 15 H 0.045 0.955 16 C -0.165 4.165 17 N -0.720 5.720 18 C -0.234 4.234 19 H 0.067 0.933 20 C -0.011 4.011 21 N -0.931 5.931 22 Si 0.901 3.099 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.283 1.283 26 C -0.059 4.059 27 C -0.158 4.158 28 C 0.120 3.880 29 F -0.136 7.136 30 H 0.042 0.958 31 H 0.091 0.909 32 H 0.043 0.957 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.157 0.843 36 H 0.392 0.608 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.046 0.954 43 H 0.033 0.967 44 H 0.052 0.948 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.138 0.862 48 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.723 16.423 -14.107 22.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.301 6.301 3 C 0.031 3.969 4 C -0.135 4.135 5 C -0.029 4.029 6 C -0.137 4.137 7 C 0.344 3.656 8 O -0.400 6.400 9 N -0.362 5.362 10 C 0.040 3.960 11 H 0.125 0.875 12 C -0.219 4.219 13 C -0.170 4.170 14 C 0.061 3.939 15 H 0.063 0.937 16 C -0.226 4.226 17 N -0.362 5.362 18 C -0.366 4.366 19 H 0.085 0.915 20 C -0.207 4.207 21 N -0.579 5.579 22 Si 0.733 3.267 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.209 1.209 26 C -0.077 4.077 27 C -0.177 4.177 28 C 0.100 3.900 29 F -0.115 7.115 30 H 0.060 0.940 31 H 0.109 0.891 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.175 0.825 36 H 0.227 0.773 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.052 0.948 44 H 0.071 0.929 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.155 0.845 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.203 15.611 -13.949 21.572 hybrid contribution -0.448 0.819 0.950 1.332 sum -5.651 16.430 -13.000 21.700 Atomic orbital electron populations 1.22779 0.80308 1.03319 1.00004 1.87912 1.20168 1.26532 1.95467 1.21070 0.89005 0.85641 1.01190 1.19618 0.95116 0.92527 1.06251 1.21050 0.93257 0.97576 0.91001 1.20193 0.94311 0.93706 1.05488 1.17988 0.82531 0.88226 0.76841 1.90821 1.62920 1.37510 1.48711 1.45872 1.05896 1.09518 1.74916 1.21065 0.94654 0.84365 0.95940 0.87468 1.22184 1.01891 1.01030 0.96818 1.22177 0.95038 1.02342 0.97422 1.20220 0.91935 0.92945 0.88772 0.93684 1.22460 0.99244 0.99662 1.01201 1.42390 1.61773 1.05729 1.26280 1.19147 1.24864 0.93474 0.99078 0.91546 1.24677 1.01342 0.95459 0.99193 1.69643 1.48643 0.99257 1.40405 0.86278 0.80085 0.76856 0.83519 1.21759 1.21844 1.20926 1.21204 1.00159 0.90880 0.95496 1.20968 0.92342 0.99272 1.05112 1.17588 0.91173 0.79241 1.01949 1.91494 1.84652 1.41707 1.93632 0.93950 0.89091 0.93825 0.91471 0.91586 0.82545 0.77325 0.92458 0.93149 0.91669 0.90526 0.92073 0.93522 0.94757 0.92918 0.78329 0.93617 0.84457 0.83934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.60 9.17 -35.23 -0.32 -4.92 16 3 C 0.11 1.13 5.90 36.00 0.21 1.34 16 4 C -0.13 -1.63 5.88 -104.61 -0.62 -2.25 16 5 C -0.01 -0.14 8.92 -39.20 -0.35 -0.49 16 6 C -0.13 -1.88 5.87 -104.97 -0.62 -2.50 16 7 C 0.56 9.51 7.73 -12.39 -0.10 9.41 16 8 O -0.52 -11.25 16.01 5.30 0.08 -11.16 16 9 N -0.71 -10.38 4.40 -54.79 -0.24 -10.62 16 10 C 0.14 2.31 2.52 -67.93 -0.17 2.14 16 11 H 0.11 2.29 7.05 -51.92 -0.37 1.92 16 12 C -0.16 -2.20 9.48 37.16 0.35 -1.84 16 13 C -0.13 -1.96 4.29 -26.73 -0.11 -2.08 16 14 C 0.17 3.21 2.84 -67.93 -0.19 3.02 16 15 H 0.05 0.86 7.56 -51.93 -0.39 0.47 16 16 C -0.17 -2.86 9.49 37.15 0.35 -2.51 16 17 N -0.72 -17.68 4.49 -53.43 -0.24 -17.92 16 18 C -0.23 -6.55 9.93 -15.06 -0.15 -6.70 16 19 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 20 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 21 N -0.93 -28.64 13.06 55.49 0.72 -27.92 16 22 Si 0.90 23.16 29.55 -169.99 -5.02 18.14 16 23 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 24 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 25 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 26 C -0.06 -0.62 9.54 -39.20 -0.37 -1.00 16 27 C -0.16 -1.55 10.01 -39.57 -0.40 -1.94 16 28 C 0.12 1.33 7.25 -39.27 -0.28 1.04 16 29 F -0.14 -1.45 16.79 2.25 0.04 -1.41 16 30 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.16 2.51 6.59 -52.49 -0.35 2.16 16 36 H 0.39 4.41 6.63 -40.82 -0.27 4.14 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.38 10.09 7.80 -40.82 -0.32 9.78 16 46 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 47 H 0.14 1.08 6.40 -52.48 -0.34 0.75 16 48 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 403.03 15.07 6.07 6.07 Total: -1.00 -34.25 403.03 -7.83 -42.08 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -7.49 Total: 11.05 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -1.43 Total: -3.38 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: 0.24 Total: -56.46 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.24 Total: -16.08 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.02 Total: 18.14 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.25 -7.83 -42.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135460753.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.951 kcal (2) G-P(sol) polarization free energy of solvation -34.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds