Wall clock time and date at job start Tue Mar 31 2020 22:28:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.42900 * 114.00195 * 2 1
4 4 C 1.50695 * 109.47171 * 180.02562 * 3 2 1
5 5 C 1.37861 * 119.94246 * 0.27661 * 4 3 2
6 6 C 1.39630 * 119.88066 * 180.27800 * 5 4 3
7 7 C 1.47718 * 120.12034 * 179.72353 * 6 5 4
8 8 O 1.21573 * 119.99817 * 359.72241 * 7 6 5
9 9 N 1.34773 * 120.00219 * 179.97438 * 7 6 5
10 10 C 1.46500 * 120.00431 * 179.72299 * 9 7 6
11 11 H 1.09008 * 109.46846 * 325.00097 * 10 9 7
12 12 C 1.52996 * 109.47098 * 85.00044 * 10 9 7
13 13 C 1.52998 * 109.47391 * 205.00423 * 10 9 7
14 14 C 1.53004 * 109.47475 * 64.99845 * 13 10 9
15 15 H 1.09000 * 109.46769 * 305.00527 * 14 13 10
16 16 C 1.52993 * 109.47475 * 185.00092 * 14 13 10
17 17 N 1.46495 * 109.46952 * 64.99640 * 14 13 10
18 18 C 1.36940 * 120.00141 * 204.99799 * 17 14 13
19 19 H 1.07995 * 119.99974 * 0.02562 * 18 17 14
20 20 C 1.38815 * 120.00287 * 180.02562 * 18 17 14
21 21 N 1.31622 * 119.99912 * 0.02562 * 20 18 17
22 22 Si 1.86796 * 120.00056 * 180.02562 * 20 18 17
23 23 H 1.48492 * 109.47446 * 90.00228 * 22 20 18
24 24 H 1.48507 * 109.47016 * 210.00040 * 22 20 18
25 25 H 1.48503 * 109.47212 * 329.99797 * 22 20 18
26 26 C 1.39671 * 119.75963 * 359.44549 * 6 5 4
27 27 C 1.37817 * 119.88584 * 0.27752 * 26 6 5
28 28 C 1.38639 * 119.94002 * 180.02562 * 4 3 2
29 29 F 1.35099 * 119.87757 * 0.02562 * 28 4 3
30 30 H 1.08995 * 109.46853 * 59.99691 * 1 2 3
31 31 H 1.08996 * 109.46897 * 179.97438 * 1 2 3
32 32 H 1.08997 * 109.46898 * 299.99891 * 1 2 3
33 33 H 1.09002 * 109.46874 * 59.99936 * 3 2 1
34 34 H 1.09004 * 109.47180 * 300.00154 * 3 2 1
35 35 H 1.07995 * 120.05663 * 0.02562 * 5 4 3
36 36 H 0.97000 * 120.00112 * 359.72737 * 9 7 6
37 37 H 1.09004 * 109.47132 * 299.99933 * 12 10 9
38 38 H 1.08994 * 109.47099 * 60.00402 * 12 10 9
39 39 H 1.09003 * 109.47061 * 180.02562 * 12 10 9
40 40 H 1.09000 * 109.47070 * 184.99798 * 13 10 9
41 41 H 1.09001 * 109.47293 * 304.99957 * 13 10 9
42 42 H 1.09005 * 109.46828 * 300.00273 * 16 14 13
43 43 H 1.09001 * 109.47007 * 59.99797 * 16 14 13
44 44 H 1.08993 * 109.47747 * 179.97438 * 16 14 13
45 45 H 0.97008 * 120.00370 * 25.00654 * 17 14 13
46 46 H 0.96997 * 120.00469 * 179.97438 * 21 20 18
47 47 H 1.08007 * 120.05927 * 180.29652 * 26 6 5
48 48 H 1.07998 * 119.94257 * 180.02562 * 27 26 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5126 1.1864 -0.0006
5 6 4.1042 -0.0588 -0.0069
6 6 5.4962 -0.1676 -0.0016
7 6 6.1357 -1.4992 -0.0021
8 8 5.4497 -2.5029 -0.0020
9 7 7.4795 -1.6015 0.0025
10 6 8.1137 -2.9221 0.0082
11 1 7.5102 -3.6124 0.5977
12 6 8.2258 -3.4402 -1.4270
13 6 9.5110 -2.8143 0.6221
14 6 9.3918 -2.4162 2.0946
15 1 8.8089 -1.4988 2.1769
16 6 10.7884 -2.1869 2.6756
17 7 8.7237 -3.4875 2.8375
18 6 8.0517 -3.2014 3.9959
19 1 8.0139 -2.1859 4.3616
20 6 7.4190 -4.2166 4.7002
21 7 7.4654 -5.4543 4.2548
22 14 6.5017 -3.8262 6.2799
23 1 5.0874 -3.5024 5.9640
24 1 6.5500 -5.0033 7.1841
25 1 7.1387 -2.6627 6.9476
26 6 6.2819 0.9872 -0.0017
27 6 5.6802 2.2271 -0.0013
28 6 4.2972 2.3294 -0.0002
29 9 3.7124 3.5472 0.0013
30 1 -0.3633 0.5139 -0.8899
31 1 -0.3633 -1.0276 -0.0005
32 1 -0.3633 0.5138 0.8900
33 1 1.6887 1.8463 0.8900
34 1 1.6887 1.8464 -0.8900
35 1 3.4920 -0.9485 -0.0117
36 1 8.0269 -0.8007 0.0022
37 1 7.2303 -3.5171 -1.8643
38 1 8.8292 -2.7499 -2.0163
39 1 8.6972 -4.4230 -1.4227
40 1 10.0166 -3.7769 0.5458
41 1 10.0857 -2.0584 0.0868
42 1 11.3713 -3.1043 2.5932
43 1 11.2855 -1.3897 2.1228
44 1 10.7036 -1.9028 3.7245
45 1 8.7573 -4.3996 2.5090
46 1 7.0236 -6.1639 4.7471
47 1 7.3591 0.9086 -0.0025
48 1 6.2869 3.1206 -0.0018
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001135460753.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:28:01
Heat of formation + Delta-G solvation = -97.027875 kcal
Electronic energy + Delta-G solvation = -29692.373126 eV
Core-core repulsion = 25469.054597 eV
Total energy + Delta-G solvation = -4223.318530 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-49.22415 -40.20524 -38.80489 -37.67831 -36.68978 -34.46053 -32.71967 -31.99727
-31.23230 -30.07247 -28.55612 -27.52492 -26.30505 -25.76464 -24.06287 -23.52271
-22.27990 -21.16712 -20.16114 -19.69858 -18.09063 -17.58029 -17.12421 -16.89454
-16.41173 -16.06993 -15.65654 -15.63609 -15.34773 -14.82253 -14.62445 -14.34527
-13.98969 -13.89570 -13.60658 -13.36901 -13.24980 -13.19544 -12.96257 -12.71267
-12.45477 -12.18317 -12.04543 -11.90583 -11.70683 -11.58507 -11.52818 -11.22407
-11.00543 -10.78096 -10.58424 -10.39088 -10.18867 -10.14458 -9.86313 -9.63169
-9.56943 -9.16053 -8.89805 -8.83123 -8.64407 -6.87340 -5.68259 -2.96080
0.56251 1.00853 2.82034 3.34256 3.38366 3.49492 3.54245 3.55607
3.77448 3.94240 4.34887 4.58030 4.66763 4.76485 4.88885 4.90582
5.00762 5.12968 5.14242 5.17639 5.18817 5.42183 5.45587 5.50957
5.54292 5.66084 5.71508 5.72830 5.82801 5.91833 5.97402 6.03161
6.05993 6.14441 6.16019 6.31593 6.39225 6.46679 6.57094 6.60297
6.74391 6.83663 6.85386 6.95538 7.10152 7.77135 7.79689 8.50074
8.53716 9.61581 10.18740 10.52824 11.54527
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.009068 B = 0.003485 C = 0.003023
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3087.066524 B = 8031.440158 C = 9258.940816
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 O -0.382 6.382
3 C 0.107 3.893
4 C -0.134 4.134
5 C -0.010 4.010
6 C -0.134 4.134
7 C 0.558 3.442
8 O -0.523 6.523
9 N -0.711 5.711
10 C 0.144 3.856
11 H 0.107 0.893
12 C -0.161 4.161
13 C -0.131 4.131
14 C 0.171 3.829
15 H 0.045 0.955
16 C -0.165 4.165
17 N -0.720 5.720
18 C -0.234 4.234
19 H 0.067 0.933
20 C -0.011 4.011
21 N -0.931 5.931
22 Si 0.901 3.099
23 H -0.290 1.290
24 H -0.292 1.292
25 H -0.283 1.283
26 C -0.059 4.059
27 C -0.158 4.158
28 C 0.120 3.880
29 F -0.136 7.136
30 H 0.042 0.958
31 H 0.091 0.909
32 H 0.043 0.957
33 H 0.067 0.933
34 H 0.066 0.934
35 H 0.157 0.843
36 H 0.392 0.608
37 H 0.056 0.944
38 H 0.049 0.951
39 H 0.064 0.936
40 H 0.076 0.924
41 H 0.061 0.939
42 H 0.046 0.954
43 H 0.033 0.967
44 H 0.052 0.948
45 H 0.383 0.617
46 H 0.254 0.746
47 H 0.138 0.862
48 H 0.143 0.857
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.723 16.423 -14.107 22.159
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 O -0.301 6.301
3 C 0.031 3.969
4 C -0.135 4.135
5 C -0.029 4.029
6 C -0.137 4.137
7 C 0.344 3.656
8 O -0.400 6.400
9 N -0.362 5.362
10 C 0.040 3.960
11 H 0.125 0.875
12 C -0.219 4.219
13 C -0.170 4.170
14 C 0.061 3.939
15 H 0.063 0.937
16 C -0.226 4.226
17 N -0.362 5.362
18 C -0.366 4.366
19 H 0.085 0.915
20 C -0.207 4.207
21 N -0.579 5.579
22 Si 0.733 3.267
23 H -0.218 1.218
24 H -0.218 1.218
25 H -0.209 1.209
26 C -0.077 4.077
27 C -0.177 4.177
28 C 0.100 3.900
29 F -0.115 7.115
30 H 0.060 0.940
31 H 0.109 0.891
32 H 0.062 0.938
33 H 0.085 0.915
34 H 0.084 0.916
35 H 0.175 0.825
36 H 0.227 0.773
37 H 0.075 0.925
38 H 0.069 0.931
39 H 0.083 0.917
40 H 0.095 0.905
41 H 0.079 0.921
42 H 0.065 0.935
43 H 0.052 0.948
44 H 0.071 0.929
45 H 0.217 0.783
46 H 0.064 0.936
47 H 0.155 0.845
48 H 0.161 0.839
Dipole moment (debyes) X Y Z Total
from point charges -5.203 15.611 -13.949 21.572
hybrid contribution -0.448 0.819 0.950 1.332
sum -5.651 16.430 -13.000 21.700
Atomic orbital electron populations
1.22779 0.80308 1.03319 1.00004 1.87912 1.20168 1.26532 1.95467
1.21070 0.89005 0.85641 1.01190 1.19618 0.95116 0.92527 1.06251
1.21050 0.93257 0.97576 0.91001 1.20193 0.94311 0.93706 1.05488
1.17988 0.82531 0.88226 0.76841 1.90821 1.62920 1.37510 1.48711
1.45872 1.05896 1.09518 1.74916 1.21065 0.94654 0.84365 0.95940
0.87468 1.22184 1.01891 1.01030 0.96818 1.22177 0.95038 1.02342
0.97422 1.20220 0.91935 0.92945 0.88772 0.93684 1.22460 0.99244
0.99662 1.01201 1.42390 1.61773 1.05729 1.26280 1.19147 1.24864
0.93474 0.99078 0.91546 1.24677 1.01342 0.95459 0.99193 1.69643
1.48643 0.99257 1.40405 0.86278 0.80085 0.76856 0.83519 1.21759
1.21844 1.20926 1.21204 1.00159 0.90880 0.95496 1.20968 0.92342
0.99272 1.05112 1.17588 0.91173 0.79241 1.01949 1.91494 1.84652
1.41707 1.93632 0.93950 0.89091 0.93825 0.91471 0.91586 0.82545
0.77325 0.92458 0.93149 0.91669 0.90526 0.92073 0.93522 0.94757
0.92918 0.78329 0.93617 0.84457 0.83934
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.27 11.01 101.05 1.11 1.38 16
2 O -0.38 -4.60 9.17 -35.23 -0.32 -4.92 16
3 C 0.11 1.13 5.90 36.00 0.21 1.34 16
4 C -0.13 -1.63 5.88 -104.61 -0.62 -2.25 16
5 C -0.01 -0.14 8.92 -39.20 -0.35 -0.49 16
6 C -0.13 -1.88 5.87 -104.97 -0.62 -2.50 16
7 C 0.56 9.51 7.73 -12.39 -0.10 9.41 16
8 O -0.52 -11.25 16.01 5.30 0.08 -11.16 16
9 N -0.71 -10.38 4.40 -54.79 -0.24 -10.62 16
10 C 0.14 2.31 2.52 -67.93 -0.17 2.14 16
11 H 0.11 2.29 7.05 -51.92 -0.37 1.92 16
12 C -0.16 -2.20 9.48 37.16 0.35 -1.84 16
13 C -0.13 -1.96 4.29 -26.73 -0.11 -2.08 16
14 C 0.17 3.21 2.84 -67.93 -0.19 3.02 16
15 H 0.05 0.86 7.56 -51.93 -0.39 0.47 16
16 C -0.17 -2.86 9.49 37.15 0.35 -2.51 16
17 N -0.72 -17.68 4.49 -53.43 -0.24 -17.92 16
18 C -0.23 -6.55 9.93 -15.06 -0.15 -6.70 16
19 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16
20 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16
21 N -0.93 -28.64 13.06 55.49 0.72 -27.92 16
22 Si 0.90 23.16 29.55 -169.99 -5.02 18.14 16
23 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16
24 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16
25 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16
26 C -0.06 -0.62 9.54 -39.20 -0.37 -1.00 16
27 C -0.16 -1.55 10.01 -39.57 -0.40 -1.94 16
28 C 0.12 1.33 7.25 -39.27 -0.28 1.04 16
29 F -0.14 -1.45 16.79 2.25 0.04 -1.41 16
30 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16
31 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16
32 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16
33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16
34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
35 H 0.16 2.51 6.59 -52.49 -0.35 2.16 16
36 H 0.39 4.41 6.63 -40.82 -0.27 4.14 16
37 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16
38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16
39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16
40 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16
41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
43 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16
44 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16
45 H 0.38 10.09 7.80 -40.82 -0.32 9.78 16
46 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16
47 H 0.14 1.08 6.40 -52.48 -0.34 0.75 16
48 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16
LS Contribution 403.03 15.07 6.07 6.07
Total: -1.00 -34.25 403.03 -7.83 -42.08
By element:
Atomic # 1 Polarization: 18.54 SS G_CDS: -7.49 Total: 11.05 kcal
Atomic # 6 Polarization: -1.95 SS G_CDS: -1.43 Total: -3.38 kcal
Atomic # 7 Polarization: -56.70 SS G_CDS: 0.24 Total: -56.46 kcal
Atomic # 8 Polarization: -15.84 SS G_CDS: -0.24 Total: -16.08 kcal
Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal
Atomic # 14 Polarization: 23.16 SS G_CDS: -5.02 Total: 18.14 kcal
Total LS contribution 6.07 Total: 6.07 kcal
Total: -34.25 -7.83 -42.08 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001135460753.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -54.951 kcal
(2) G-P(sol) polarization free energy of solvation -34.250 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.201 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.077 kcal
(6) G-S(sol) free energy of system = (1) + (5) -97.028 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds