Wall clock time and date at job start Tue Mar 31 2020 22:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 114.00195 * 2 1 4 4 C 1.50695 * 109.47171 * 180.02562 * 3 2 1 5 5 C 1.37861 * 119.94246 * 0.27661 * 4 3 2 6 6 C 1.39630 * 119.88066 * 180.27800 * 5 4 3 7 7 C 1.47718 * 120.12034 * 179.72353 * 6 5 4 8 8 O 1.21573 * 119.99817 * 359.72241 * 7 6 5 9 9 N 1.34773 * 120.00219 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00431 * 179.72299 * 9 7 6 11 11 H 1.09008 * 109.46846 * 325.00097 * 10 9 7 12 12 C 1.52996 * 109.47098 * 85.00044 * 10 9 7 13 13 C 1.52998 * 109.47391 * 205.00423 * 10 9 7 14 14 C 1.53004 * 109.47475 * 64.99845 * 13 10 9 15 15 H 1.09000 * 109.46769 * 305.00527 * 14 13 10 16 16 C 1.52993 * 109.47475 * 185.00092 * 14 13 10 17 17 N 1.46495 * 109.46952 * 64.99640 * 14 13 10 18 18 C 1.36940 * 120.00141 * 204.99799 * 17 14 13 19 19 H 1.07995 * 119.99974 * 0.02562 * 18 17 14 20 20 C 1.38815 * 120.00287 * 180.02562 * 18 17 14 21 21 N 1.31622 * 119.99912 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00056 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47446 * 90.00228 * 22 20 18 24 24 H 1.48507 * 109.47016 * 210.00040 * 22 20 18 25 25 H 1.48503 * 109.47212 * 329.99797 * 22 20 18 26 26 C 1.39671 * 119.75963 * 359.44549 * 6 5 4 27 27 C 1.37817 * 119.88584 * 0.27752 * 26 6 5 28 28 C 1.38639 * 119.94002 * 180.02562 * 4 3 2 29 29 F 1.35099 * 119.87757 * 0.02562 * 28 4 3 30 30 H 1.08995 * 109.46853 * 59.99691 * 1 2 3 31 31 H 1.08996 * 109.46897 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46898 * 299.99891 * 1 2 3 33 33 H 1.09002 * 109.46874 * 59.99936 * 3 2 1 34 34 H 1.09004 * 109.47180 * 300.00154 * 3 2 1 35 35 H 1.07995 * 120.05663 * 0.02562 * 5 4 3 36 36 H 0.97000 * 120.00112 * 359.72737 * 9 7 6 37 37 H 1.09004 * 109.47132 * 299.99933 * 12 10 9 38 38 H 1.08994 * 109.47099 * 60.00402 * 12 10 9 39 39 H 1.09003 * 109.47061 * 180.02562 * 12 10 9 40 40 H 1.09000 * 109.47070 * 184.99798 * 13 10 9 41 41 H 1.09001 * 109.47293 * 304.99957 * 13 10 9 42 42 H 1.09005 * 109.46828 * 300.00273 * 16 14 13 43 43 H 1.09001 * 109.47007 * 59.99797 * 16 14 13 44 44 H 1.08993 * 109.47747 * 179.97438 * 16 14 13 45 45 H 0.97008 * 120.00370 * 25.00654 * 17 14 13 46 46 H 0.96997 * 120.00469 * 179.97438 * 21 20 18 47 47 H 1.08007 * 120.05927 * 180.29652 * 26 6 5 48 48 H 1.07998 * 119.94257 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.1042 -0.0588 -0.0069 6 6 5.4962 -0.1676 -0.0016 7 6 6.1357 -1.4992 -0.0021 8 8 5.4497 -2.5029 -0.0020 9 7 7.4795 -1.6015 0.0025 10 6 8.1137 -2.9221 0.0082 11 1 7.5102 -3.6124 0.5977 12 6 8.2258 -3.4402 -1.4270 13 6 9.5110 -2.8143 0.6221 14 6 9.3918 -2.4162 2.0946 15 1 8.8089 -1.4988 2.1769 16 6 10.7884 -2.1869 2.6756 17 7 8.7237 -3.4875 2.8375 18 6 8.0517 -3.2014 3.9959 19 1 8.0139 -2.1859 4.3616 20 6 7.4190 -4.2166 4.7002 21 7 7.4654 -5.4543 4.2548 22 14 6.5017 -3.8262 6.2799 23 1 5.0874 -3.5024 5.9640 24 1 6.5500 -5.0033 7.1841 25 1 7.1387 -2.6627 6.9476 26 6 6.2819 0.9872 -0.0017 27 6 5.6802 2.2271 -0.0013 28 6 4.2972 2.3294 -0.0002 29 9 3.7124 3.5472 0.0013 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.4920 -0.9485 -0.0117 36 1 8.0269 -0.8007 0.0022 37 1 7.2303 -3.5171 -1.8643 38 1 8.8292 -2.7499 -2.0163 39 1 8.6972 -4.4230 -1.4227 40 1 10.0166 -3.7769 0.5458 41 1 10.0857 -2.0584 0.0868 42 1 11.3713 -3.1043 2.5932 43 1 11.2855 -1.3897 2.1228 44 1 10.7036 -1.9028 3.7245 45 1 8.7573 -4.3996 2.5090 46 1 7.0236 -6.1639 4.7471 47 1 7.3591 0.9086 -0.0025 48 1 6.2869 3.1206 -0.0018 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135460753.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:01 Heat of formation + Delta-G solvation = -119.982981 kcal Electronic energy + Delta-G solvation = -29693.368534 eV Core-core repulsion = 25469.054597 eV Total energy + Delta-G solvation = -4224.313938 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.07535 -41.35918 -39.85321 -38.61248 -38.13479 -36.07993 -34.13175 -33.42663 -32.35828 -31.24374 -30.36780 -28.29088 -27.57289 -26.57630 -25.67914 -25.06137 -23.16816 -22.40779 -21.43871 -21.17334 -19.33280 -18.97397 -18.48561 -17.90106 -17.22554 -17.18202 -16.77469 -16.52697 -16.45377 -16.28190 -15.95959 -15.62919 -15.52026 -15.23347 -15.01718 -14.54640 -14.28889 -14.20463 -14.12100 -13.91640 -13.58681 -13.43470 -13.30053 -13.17644 -12.93730 -12.92952 -12.78787 -12.63520 -12.29647 -12.23281 -12.17377 -12.09784 -11.79855 -11.53868 -11.39580 -11.00584 -10.92842 -10.89545 -10.12044 -10.01624 -9.70991 -8.92837 -7.91018 -5.15787 -0.41322 0.10911 1.41503 1.44983 1.51080 1.71678 2.18833 2.56802 2.59637 2.67150 3.05902 3.43829 3.50305 3.68435 3.76014 3.86719 4.03319 4.05713 4.10901 4.16188 4.28568 4.33719 4.43296 4.46466 4.52548 4.57173 4.63948 4.71552 4.81379 4.82172 4.85282 4.85760 4.94041 4.97997 5.05034 5.10348 5.13767 5.18273 5.27478 5.37905 5.44909 5.52896 5.63667 5.67018 5.70303 6.11400 6.32610 6.61745 7.31164 7.38279 8.19546 8.38155 9.32935 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009068 B = 0.003485 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3087.066524 B = 8031.440158 C = 9258.940816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.104 3.896 4 C -0.141 4.141 5 C -0.032 4.032 6 C -0.154 4.154 7 C 0.551 3.449 8 O -0.585 6.585 9 N -0.695 5.695 10 C 0.145 3.855 11 H 0.045 0.955 12 C -0.151 4.151 13 C -0.117 4.117 14 C 0.162 3.838 15 H 0.045 0.955 16 C -0.156 4.156 17 N -0.732 5.732 18 C -0.224 4.224 19 H 0.070 0.930 20 C -0.078 4.078 21 N -0.969 5.969 22 Si 0.958 3.042 23 H -0.299 1.299 24 H -0.295 1.295 25 H -0.266 1.266 26 C -0.046 4.046 27 C -0.144 4.144 28 C 0.124 3.876 29 F -0.130 7.130 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.125 0.875 36 H 0.412 0.588 37 H 0.035 0.965 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.111 0.889 42 H 0.041 0.959 43 H 0.079 0.921 44 H 0.028 0.972 45 H 0.370 0.630 46 H 0.247 0.753 47 H 0.172 0.828 48 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.708 20.315 -15.089 25.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C 0.028 3.972 4 C -0.142 4.142 5 C -0.051 4.051 6 C -0.158 4.158 7 C 0.339 3.661 8 O -0.466 6.466 9 N -0.347 5.347 10 C 0.041 3.959 11 H 0.064 0.936 12 C -0.209 4.209 13 C -0.156 4.156 14 C 0.054 3.946 15 H 0.063 0.937 16 C -0.216 4.216 17 N -0.372 5.372 18 C -0.356 4.356 19 H 0.088 0.912 20 C -0.270 4.270 21 N -0.621 5.621 22 Si 0.788 3.212 23 H -0.227 1.227 24 H -0.221 1.221 25 H -0.191 1.191 26 C -0.065 4.065 27 C -0.162 4.162 28 C 0.104 3.896 29 F -0.109 7.109 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.142 0.858 36 H 0.251 0.749 37 H 0.054 0.946 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.129 0.871 42 H 0.060 0.940 43 H 0.098 0.902 44 H 0.047 0.953 45 H 0.201 0.799 46 H 0.055 0.945 47 H 0.189 0.811 48 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -3.127 19.594 -14.946 24.841 hybrid contribution -1.074 -0.268 1.184 1.621 sum -4.201 19.325 -13.762 24.094 Atomic orbital electron populations 1.22960 0.78712 1.03907 1.01427 1.87891 1.22114 1.27724 1.95717 1.21222 0.88147 0.85342 1.02492 1.19771 0.96246 0.92158 1.06025 1.20850 0.93517 0.97553 0.93188 1.20052 0.94398 0.93321 1.07988 1.18558 0.83012 0.88814 0.75732 1.90787 1.64303 1.39794 1.51683 1.45713 1.05366 1.09897 1.73713 1.20878 0.94335 0.83986 0.96724 0.93616 1.22084 1.01403 1.02211 0.95238 1.22091 0.94588 1.03955 0.94939 1.20550 0.92249 0.91151 0.90608 0.93742 1.22304 0.98030 1.01004 1.00235 1.42618 1.62081 1.06612 1.25929 1.19512 1.23294 0.93289 0.99540 0.91177 1.25404 1.03436 0.95612 1.02520 1.69794 1.50473 1.00019 1.41771 0.85353 0.78401 0.76971 0.80440 1.22667 1.22149 1.19082 1.21491 1.01454 0.89712 0.93818 1.21372 0.91919 1.00156 1.02769 1.17690 0.91775 0.78915 1.01219 1.91514 1.84729 1.41155 1.93478 0.92122 0.89062 0.92721 0.90431 0.89717 0.85755 0.74934 0.94603 0.89593 0.91139 0.90506 0.87069 0.94010 0.90220 0.95260 0.79882 0.94450 0.81104 0.80095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.41 -10.44 9.17 -148.98 -1.37 -11.81 16 3 C 0.10 2.15 5.90 71.23 0.42 2.57 16 4 C -0.14 -3.38 5.88 -19.86 -0.12 -3.50 16 5 C -0.03 -0.96 8.92 22.52 0.20 -0.76 16 6 C -0.15 -4.34 5.87 -20.09 -0.12 -4.46 16 7 C 0.55 19.40 7.73 86.75 0.67 20.07 16 8 O -0.58 -27.29 16.01 -3.95 -0.06 -27.36 16 9 N -0.69 -19.57 4.40 -445.53 -1.96 -21.53 16 10 C 0.15 4.63 2.52 44.99 0.11 4.74 16 11 H 0.05 2.06 7.05 -2.38 -0.02 2.05 16 12 C -0.15 -3.97 9.48 71.98 0.68 -3.29 16 13 C -0.12 -3.20 4.29 30.59 0.13 -3.07 16 14 C 0.16 5.80 2.84 44.99 0.13 5.92 16 15 H 0.04 1.60 7.56 -2.39 -0.02 1.58 16 16 C -0.16 -4.93 9.49 71.98 0.68 -4.24 16 17 N -0.73 -36.45 4.49 -322.95 -1.45 -37.90 16 18 C -0.22 -12.69 9.93 84.03 0.83 -11.85 16 19 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 20 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 21 N -0.97 -61.98 13.06 21.65 0.28 -61.70 16 22 Si 0.96 48.76 29.55 68.60 2.03 50.78 16 23 H -0.30 -15.45 7.11 99.48 0.71 -14.74 16 24 H -0.29 -15.00 7.11 99.48 0.71 -14.30 16 25 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 26 C -0.05 -0.84 9.54 22.52 0.21 -0.63 16 27 C -0.14 -2.23 10.01 22.28 0.22 -2.01 16 28 C 0.12 2.42 7.25 22.47 0.16 2.58 16 29 F -0.13 -2.37 16.79 44.97 0.75 -1.62 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.12 4.48 6.59 -2.91 -0.02 4.46 16 36 H 0.41 7.87 6.63 -92.71 -0.61 7.26 16 37 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 43 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.37 20.18 7.80 -92.70 -0.72 19.46 16 46 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 47 H 0.17 1.84 6.40 -2.91 -0.02 1.82 16 48 H 0.18 1.47 8.06 -2.91 -0.02 1.45 16 Total: -1.00 -81.32 403.03 3.81 -77.51 By element: Atomic # 1 Polarization: 34.41 SS G_CDS: -0.36 Total: 34.05 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 5.95 Total: -0.43 kcal Atomic # 7 Polarization: -118.00 SS G_CDS: -3.13 Total: -121.13 kcal Atomic # 8 Polarization: -37.74 SS G_CDS: -1.43 Total: -39.17 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.75 Total: -1.62 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 2.03 Total: 50.78 kcal Total: -81.32 3.81 -77.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135460753.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.473 kcal (2) G-P(sol) polarization free energy of solvation -81.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds