Wall clock time and date at job start Tue Mar 31 2020 22:28:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.42900 * 114.00195 * 2 1
4 4 C 1.50695 * 109.47171 * 180.02562 * 3 2 1
5 5 C 1.37861 * 119.94246 * 0.27661 * 4 3 2
6 6 C 1.39630 * 119.88066 * 180.27800 * 5 4 3
7 7 C 1.47718 * 120.12034 * 179.72353 * 6 5 4
8 8 O 1.21573 * 119.99817 * 359.72241 * 7 6 5
9 9 N 1.34773 * 120.00219 * 179.97438 * 7 6 5
10 10 C 1.46500 * 120.00431 * 179.72299 * 9 7 6
11 11 H 1.09008 * 109.46846 * 325.00097 * 10 9 7
12 12 C 1.52996 * 109.47098 * 85.00044 * 10 9 7
13 13 C 1.52998 * 109.47391 * 205.00423 * 10 9 7
14 14 C 1.53004 * 109.47475 * 64.99845 * 13 10 9
15 15 H 1.09000 * 109.46769 * 305.00527 * 14 13 10
16 16 C 1.52993 * 109.47475 * 185.00092 * 14 13 10
17 17 N 1.46495 * 109.46952 * 64.99640 * 14 13 10
18 18 C 1.36940 * 120.00141 * 204.99799 * 17 14 13
19 19 H 1.07995 * 119.99974 * 0.02562 * 18 17 14
20 20 C 1.38815 * 120.00287 * 180.02562 * 18 17 14
21 21 N 1.31622 * 119.99912 * 0.02562 * 20 18 17
22 22 Si 1.86796 * 120.00056 * 180.02562 * 20 18 17
23 23 H 1.48492 * 109.47446 * 90.00228 * 22 20 18
24 24 H 1.48507 * 109.47016 * 210.00040 * 22 20 18
25 25 H 1.48503 * 109.47212 * 329.99797 * 22 20 18
26 26 C 1.39671 * 119.75963 * 359.44549 * 6 5 4
27 27 C 1.37817 * 119.88584 * 0.27752 * 26 6 5
28 28 C 1.38639 * 119.94002 * 180.02562 * 4 3 2
29 29 F 1.35099 * 119.87757 * 0.02562 * 28 4 3
30 30 H 1.08995 * 109.46853 * 59.99691 * 1 2 3
31 31 H 1.08996 * 109.46897 * 179.97438 * 1 2 3
32 32 H 1.08997 * 109.46898 * 299.99891 * 1 2 3
33 33 H 1.09002 * 109.46874 * 59.99936 * 3 2 1
34 34 H 1.09004 * 109.47180 * 300.00154 * 3 2 1
35 35 H 1.07995 * 120.05663 * 0.02562 * 5 4 3
36 36 H 0.97000 * 120.00112 * 359.72737 * 9 7 6
37 37 H 1.09004 * 109.47132 * 299.99933 * 12 10 9
38 38 H 1.08994 * 109.47099 * 60.00402 * 12 10 9
39 39 H 1.09003 * 109.47061 * 180.02562 * 12 10 9
40 40 H 1.09000 * 109.47070 * 184.99798 * 13 10 9
41 41 H 1.09001 * 109.47293 * 304.99957 * 13 10 9
42 42 H 1.09005 * 109.46828 * 300.00273 * 16 14 13
43 43 H 1.09001 * 109.47007 * 59.99797 * 16 14 13
44 44 H 1.08993 * 109.47747 * 179.97438 * 16 14 13
45 45 H 0.97008 * 120.00370 * 25.00654 * 17 14 13
46 46 H 0.96997 * 120.00469 * 179.97438 * 21 20 18
47 47 H 1.08007 * 120.05927 * 180.29652 * 26 6 5
48 48 H 1.07998 * 119.94257 * 180.02562 * 27 26 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5126 1.1864 -0.0006
5 6 4.1042 -0.0588 -0.0069
6 6 5.4962 -0.1676 -0.0016
7 6 6.1357 -1.4992 -0.0021
8 8 5.4497 -2.5029 -0.0020
9 7 7.4795 -1.6015 0.0025
10 6 8.1137 -2.9221 0.0082
11 1 7.5102 -3.6124 0.5977
12 6 8.2258 -3.4402 -1.4270
13 6 9.5110 -2.8143 0.6221
14 6 9.3918 -2.4162 2.0946
15 1 8.8089 -1.4988 2.1769
16 6 10.7884 -2.1869 2.6756
17 7 8.7237 -3.4875 2.8375
18 6 8.0517 -3.2014 3.9959
19 1 8.0139 -2.1859 4.3616
20 6 7.4190 -4.2166 4.7002
21 7 7.4654 -5.4543 4.2548
22 14 6.5017 -3.8262 6.2799
23 1 5.0874 -3.5024 5.9640
24 1 6.5500 -5.0033 7.1841
25 1 7.1387 -2.6627 6.9476
26 6 6.2819 0.9872 -0.0017
27 6 5.6802 2.2271 -0.0013
28 6 4.2972 2.3294 -0.0002
29 9 3.7124 3.5472 0.0013
30 1 -0.3633 0.5139 -0.8899
31 1 -0.3633 -1.0276 -0.0005
32 1 -0.3633 0.5138 0.8900
33 1 1.6887 1.8463 0.8900
34 1 1.6887 1.8464 -0.8900
35 1 3.4920 -0.9485 -0.0117
36 1 8.0269 -0.8007 0.0022
37 1 7.2303 -3.5171 -1.8643
38 1 8.8292 -2.7499 -2.0163
39 1 8.6972 -4.4230 -1.4227
40 1 10.0166 -3.7769 0.5458
41 1 10.0857 -2.0584 0.0868
42 1 11.3713 -3.1043 2.5932
43 1 11.2855 -1.3897 2.1228
44 1 10.7036 -1.9028 3.7245
45 1 8.7573 -4.3996 2.5090
46 1 7.0236 -6.1639 4.7471
47 1 7.3591 0.9086 -0.0025
48 1 6.2869 3.1206 -0.0018
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001135460753.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:28:01
Heat of formation + Delta-G solvation = -119.982981 kcal
Electronic energy + Delta-G solvation = -29693.368534 eV
Core-core repulsion = 25469.054597 eV
Total energy + Delta-G solvation = -4224.313938 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-50.07535 -41.35918 -39.85321 -38.61248 -38.13479 -36.07993 -34.13175 -33.42663
-32.35828 -31.24374 -30.36780 -28.29088 -27.57289 -26.57630 -25.67914 -25.06137
-23.16816 -22.40779 -21.43871 -21.17334 -19.33280 -18.97397 -18.48561 -17.90106
-17.22554 -17.18202 -16.77469 -16.52697 -16.45377 -16.28190 -15.95959 -15.62919
-15.52026 -15.23347 -15.01718 -14.54640 -14.28889 -14.20463 -14.12100 -13.91640
-13.58681 -13.43470 -13.30053 -13.17644 -12.93730 -12.92952 -12.78787 -12.63520
-12.29647 -12.23281 -12.17377 -12.09784 -11.79855 -11.53868 -11.39580 -11.00584
-10.92842 -10.89545 -10.12044 -10.01624 -9.70991 -8.92837 -7.91018 -5.15787
-0.41322 0.10911 1.41503 1.44983 1.51080 1.71678 2.18833 2.56802
2.59637 2.67150 3.05902 3.43829 3.50305 3.68435 3.76014 3.86719
4.03319 4.05713 4.10901 4.16188 4.28568 4.33719 4.43296 4.46466
4.52548 4.57173 4.63948 4.71552 4.81379 4.82172 4.85282 4.85760
4.94041 4.97997 5.05034 5.10348 5.13767 5.18273 5.27478 5.37905
5.44909 5.52896 5.63667 5.67018 5.70303 6.11400 6.32610 6.61745
7.31164 7.38279 8.19546 8.38155 9.32935
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.009068 B = 0.003485 C = 0.003023
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3087.066524 B = 8031.440158 C = 9258.940816
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.415 6.415
3 C 0.104 3.896
4 C -0.141 4.141
5 C -0.032 4.032
6 C -0.154 4.154
7 C 0.551 3.449
8 O -0.585 6.585
9 N -0.695 5.695
10 C 0.145 3.855
11 H 0.045 0.955
12 C -0.151 4.151
13 C -0.117 4.117
14 C 0.162 3.838
15 H 0.045 0.955
16 C -0.156 4.156
17 N -0.732 5.732
18 C -0.224 4.224
19 H 0.070 0.930
20 C -0.078 4.078
21 N -0.969 5.969
22 Si 0.958 3.042
23 H -0.299 1.299
24 H -0.295 1.295
25 H -0.266 1.266
26 C -0.046 4.046
27 C -0.144 4.144
28 C 0.124 3.876
29 F -0.130 7.130
30 H 0.060 0.940
31 H 0.091 0.909
32 H 0.054 0.946
33 H 0.078 0.922
34 H 0.085 0.915
35 H 0.125 0.875
36 H 0.412 0.588
37 H 0.035 0.965
38 H 0.085 0.915
39 H 0.070 0.930
40 H 0.076 0.924
41 H 0.111 0.889
42 H 0.041 0.959
43 H 0.079 0.921
44 H 0.028 0.972
45 H 0.370 0.630
46 H 0.247 0.753
47 H 0.172 0.828
48 H 0.182 0.818
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.708 20.315 -15.089 25.451
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.334 6.334
3 C 0.028 3.972
4 C -0.142 4.142
5 C -0.051 4.051
6 C -0.158 4.158
7 C 0.339 3.661
8 O -0.466 6.466
9 N -0.347 5.347
10 C 0.041 3.959
11 H 0.064 0.936
12 C -0.209 4.209
13 C -0.156 4.156
14 C 0.054 3.946
15 H 0.063 0.937
16 C -0.216 4.216
17 N -0.372 5.372
18 C -0.356 4.356
19 H 0.088 0.912
20 C -0.270 4.270
21 N -0.621 5.621
22 Si 0.788 3.212
23 H -0.227 1.227
24 H -0.221 1.221
25 H -0.191 1.191
26 C -0.065 4.065
27 C -0.162 4.162
28 C 0.104 3.896
29 F -0.109 7.109
30 H 0.079 0.921
31 H 0.109 0.891
32 H 0.073 0.927
33 H 0.096 0.904
34 H 0.103 0.897
35 H 0.142 0.858
36 H 0.251 0.749
37 H 0.054 0.946
38 H 0.104 0.896
39 H 0.089 0.911
40 H 0.095 0.905
41 H 0.129 0.871
42 H 0.060 0.940
43 H 0.098 0.902
44 H 0.047 0.953
45 H 0.201 0.799
46 H 0.055 0.945
47 H 0.189 0.811
48 H 0.199 0.801
Dipole moment (debyes) X Y Z Total
from point charges -3.127 19.594 -14.946 24.841
hybrid contribution -1.074 -0.268 1.184 1.621
sum -4.201 19.325 -13.762 24.094
Atomic orbital electron populations
1.22960 0.78712 1.03907 1.01427 1.87891 1.22114 1.27724 1.95717
1.21222 0.88147 0.85342 1.02492 1.19771 0.96246 0.92158 1.06025
1.20850 0.93517 0.97553 0.93188 1.20052 0.94398 0.93321 1.07988
1.18558 0.83012 0.88814 0.75732 1.90787 1.64303 1.39794 1.51683
1.45713 1.05366 1.09897 1.73713 1.20878 0.94335 0.83986 0.96724
0.93616 1.22084 1.01403 1.02211 0.95238 1.22091 0.94588 1.03955
0.94939 1.20550 0.92249 0.91151 0.90608 0.93742 1.22304 0.98030
1.01004 1.00235 1.42618 1.62081 1.06612 1.25929 1.19512 1.23294
0.93289 0.99540 0.91177 1.25404 1.03436 0.95612 1.02520 1.69794
1.50473 1.00019 1.41771 0.85353 0.78401 0.76971 0.80440 1.22667
1.22149 1.19082 1.21491 1.01454 0.89712 0.93818 1.21372 0.91919
1.00156 1.02769 1.17690 0.91775 0.78915 1.01219 1.91514 1.84729
1.41155 1.93478 0.92122 0.89062 0.92721 0.90431 0.89717 0.85755
0.74934 0.94603 0.89593 0.91139 0.90506 0.87069 0.94010 0.90220
0.95260 0.79882 0.94450 0.81104 0.80095
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.43 11.01 113.37 1.25 1.68 16
2 O -0.41 -10.44 9.17 -148.98 -1.37 -11.81 16
3 C 0.10 2.15 5.90 71.23 0.42 2.57 16
4 C -0.14 -3.38 5.88 -19.86 -0.12 -3.50 16
5 C -0.03 -0.96 8.92 22.52 0.20 -0.76 16
6 C -0.15 -4.34 5.87 -20.09 -0.12 -4.46 16
7 C 0.55 19.40 7.73 86.75 0.67 20.07 16
8 O -0.58 -27.29 16.01 -3.95 -0.06 -27.36 16
9 N -0.69 -19.57 4.40 -445.53 -1.96 -21.53 16
10 C 0.15 4.63 2.52 44.99 0.11 4.74 16
11 H 0.05 2.06 7.05 -2.38 -0.02 2.05 16
12 C -0.15 -3.97 9.48 71.98 0.68 -3.29 16
13 C -0.12 -3.20 4.29 30.59 0.13 -3.07 16
14 C 0.16 5.80 2.84 44.99 0.13 5.92 16
15 H 0.04 1.60 7.56 -2.39 -0.02 1.58 16
16 C -0.16 -4.93 9.49 71.98 0.68 -4.24 16
17 N -0.73 -36.45 4.49 -322.95 -1.45 -37.90 16
18 C -0.22 -12.69 9.93 84.03 0.83 -11.85 16
19 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16
20 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16
21 N -0.97 -61.98 13.06 21.65 0.28 -61.70 16
22 Si 0.96 48.76 29.55 68.60 2.03 50.78 16
23 H -0.30 -15.45 7.11 99.48 0.71 -14.74 16
24 H -0.29 -15.00 7.11 99.48 0.71 -14.30 16
25 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16
26 C -0.05 -0.84 9.54 22.52 0.21 -0.63 16
27 C -0.14 -2.23 10.01 22.28 0.22 -2.01 16
28 C 0.12 2.42 7.25 22.47 0.16 2.58 16
29 F -0.13 -2.37 16.79 44.97 0.75 -1.62 16
30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16
31 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16
32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16
33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16
34 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16
35 H 0.12 4.48 6.59 -2.91 -0.02 4.46 16
36 H 0.41 7.87 6.63 -92.71 -0.61 7.26 16
37 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16
38 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16
39 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16
40 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16
41 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16
42 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16
43 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16
44 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16
45 H 0.37 20.18 7.80 -92.70 -0.72 19.46 16
46 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16
47 H 0.17 1.84 6.40 -2.91 -0.02 1.82 16
48 H 0.18 1.47 8.06 -2.91 -0.02 1.45 16
Total: -1.00 -81.32 403.03 3.81 -77.51
By element:
Atomic # 1 Polarization: 34.41 SS G_CDS: -0.36 Total: 34.05 kcal
Atomic # 6 Polarization: -6.38 SS G_CDS: 5.95 Total: -0.43 kcal
Atomic # 7 Polarization: -118.00 SS G_CDS: -3.13 Total: -121.13 kcal
Atomic # 8 Polarization: -37.74 SS G_CDS: -1.43 Total: -39.17 kcal
Atomic # 9 Polarization: -2.37 SS G_CDS: 0.75 Total: -1.62 kcal
Atomic # 14 Polarization: 48.76 SS G_CDS: 2.03 Total: 50.78 kcal
Total: -81.32 3.81 -77.51 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001135460753.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -42.473 kcal
(2) G-P(sol) polarization free energy of solvation -81.321 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.794 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.811 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.510 kcal
(6) G-S(sol) free energy of system = (1) + (5) -119.983 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds