Wall clock time and date at job start Tue Mar 31 2020 22:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35895 * 117.00298 * 2 1 4 4 C 1.38773 * 120.03760 * 0.02562 * 3 2 1 5 5 C 1.38139 * 119.99347 * 179.70267 * 4 3 2 6 6 C 1.38255 * 120.07357 * 0.52932 * 5 4 3 7 7 C 1.50705 * 119.95195 * 179.77107 * 6 5 4 8 8 C 1.50707 * 109.46669 * 264.72020 * 7 6 5 9 9 O 1.21281 * 119.99843 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99794 * 180.02562 * 8 7 6 11 11 C 1.46495 * 119.99718 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.47210 * 324.99916 * 11 10 8 13 13 C 1.52999 * 109.47389 * 85.00140 * 11 10 8 14 14 C 1.53006 * 109.46696 * 204.99517 * 11 10 8 15 15 C 1.52997 * 109.46841 * 65.00499 * 14 11 10 16 16 H 1.09005 * 109.47159 * 54.99606 * 15 14 11 17 17 C 1.52999 * 109.47264 * 174.99605 * 15 14 11 18 18 N 1.46498 * 109.47167 * 294.99436 * 15 14 11 19 19 C 1.36935 * 120.00239 * 154.99975 * 18 15 14 20 20 H 1.08004 * 120.00069 * 0.02562 * 19 18 15 21 21 C 1.38811 * 120.00368 * 180.02562 * 19 18 15 22 22 N 1.31624 * 119.99540 * 359.72375 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46758 * 269.72270 * 23 21 19 25 25 H 1.48499 * 109.47026 * 29.72118 * 23 21 19 26 26 H 1.48496 * 109.47474 * 149.72153 * 23 21 19 27 27 C 1.38472 * 120.08871 * 359.48801 * 6 5 4 28 28 F 1.35104 * 119.99728 * 180.25574 * 27 6 5 29 29 C 1.38388 * 120.00358 * 0.23465 * 27 6 5 30 30 H 1.08993 * 109.47337 * 59.99999 * 1 2 3 31 31 H 1.09005 * 109.47096 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47335 * 299.99876 * 1 2 3 33 33 H 1.07999 * 120.00751 * 359.97438 * 4 3 2 34 34 H 1.07999 * 119.96274 * 180.29466 * 5 4 3 35 35 H 1.08997 * 109.47232 * 144.72525 * 7 6 5 36 36 H 1.08997 * 109.47322 * 24.71779 * 7 6 5 37 37 H 0.96997 * 119.99976 * 359.97438 * 10 8 7 38 38 H 1.09000 * 109.47086 * 299.99744 * 13 11 10 39 39 H 1.09007 * 109.47428 * 59.99518 * 13 11 10 40 40 H 1.09001 * 109.47632 * 179.97438 * 13 11 10 41 41 H 1.08996 * 109.47489 * 304.99916 * 14 11 10 42 42 H 1.09001 * 109.46720 * 184.99882 * 14 11 10 43 43 H 1.08994 * 109.47214 * 179.97438 * 17 15 14 44 44 H 1.08994 * 109.47102 * 299.99987 * 17 15 14 45 45 H 1.09005 * 109.47033 * 59.99923 * 17 15 14 46 46 H 0.97004 * 119.99747 * 335.00715 * 18 15 14 47 47 H 0.97000 * 120.00481 * 0.27542 * 22 21 19 48 48 H 1.07996 * 120.03775 * 179.97438 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2910 2.3752 0.0005 5 6 1.9192 3.6055 0.0067 6 6 3.2998 3.6785 0.0014 7 6 3.9822 5.0222 0.0030 8 6 4.3205 5.4154 -1.4121 9 8 4.0350 4.6774 -2.3312 10 7 4.9401 6.5872 -1.6560 11 6 5.2684 6.9696 -3.0315 12 1 5.5353 6.0801 -3.6021 13 6 4.0562 7.6445 -3.6764 14 6 6.4490 7.9429 -3.0223 15 6 7.6942 7.2290 -2.4925 16 1 7.8763 6.3304 -3.0820 17 6 8.9016 8.1626 -2.5996 18 7 7.4858 6.8594 -1.0903 19 6 8.1793 5.8103 -0.5484 20 1 8.8803 5.2557 -1.1546 21 6 7.9814 5.4597 0.7800 22 7 7.1311 6.1391 1.5203 23 14 8.9279 4.0291 1.5195 24 1 8.1523 2.7758 1.3379 25 1 10.2420 3.9009 0.8398 26 1 9.1419 4.2733 2.9686 27 6 4.0563 2.5188 0.0005 28 9 5.4054 2.5923 0.0004 29 6 3.4307 1.2844 0.0000 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 0.2125 2.3196 0.0005 34 1 1.3311 4.5113 0.0120 35 1 4.8971 4.9644 0.5925 36 1 3.3162 5.7675 0.4378 37 1 5.1681 7.1775 -0.9209 38 1 3.2151 6.9512 -3.6830 39 1 3.7893 8.5341 -3.1058 40 1 4.3006 7.9295 -4.6998 41 1 6.2153 8.7914 -2.3792 42 1 6.6365 8.2962 -4.0362 43 1 9.7886 7.6542 -2.2218 44 1 9.0567 8.4377 -3.6428 45 1 8.7195 9.0612 -2.0101 46 1 6.8564 7.3577 -0.5458 47 1 6.6398 6.8822 1.1365 48 1 4.0202 0.3795 -0.0011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135824855.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:42 Heat of formation + Delta-G solvation = -84.584439 kcal Electronic energy + Delta-G solvation = -30903.931604 eV Core-core repulsion = 26681.152662 eV Total energy + Delta-G solvation = -4222.778942 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.39528 -40.09382 -39.31524 -37.46004 -36.64191 -34.30110 -32.57173 -32.02803 -30.70331 -30.30400 -28.30250 -27.86534 -26.45860 -26.19541 -23.46144 -22.76481 -21.99486 -20.80017 -20.32108 -19.54585 -18.34986 -17.36916 -16.83658 -16.51906 -16.00282 -15.84738 -15.74925 -15.20364 -14.91003 -14.90094 -14.56197 -14.29217 -14.00087 -13.61586 -13.49564 -13.28588 -13.06206 -12.97588 -12.63226 -12.38097 -12.31668 -12.17572 -12.04146 -11.74086 -11.67236 -11.51731 -11.24153 -11.02835 -10.86570 -10.81810 -10.68041 -10.44482 -10.38829 -10.10141 -9.97647 -9.24707 -9.13443 -8.91582 -8.66690 -8.37939 -8.00276 -6.97217 -6.06427 -3.05642 1.34829 1.42143 3.11478 3.32219 3.57727 3.62393 3.64329 3.73624 3.96696 4.66072 4.71341 4.75151 4.94718 4.99122 5.01695 5.04359 5.05381 5.28510 5.33063 5.41552 5.42771 5.49333 5.56644 5.60314 5.65949 5.78732 5.82676 5.92697 5.95192 6.07222 6.09659 6.17073 6.18890 6.30029 6.31795 6.36116 6.40350 6.48335 6.53376 6.62329 6.82060 6.88999 7.01079 7.14586 7.34326 7.86423 8.14618 8.76627 8.89377 9.22962 10.08061 10.23869 11.40335 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.004283 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.908061 B = 6535.185006 C = 8361.634614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.147 3.853 4 C -0.222 4.222 5 C -0.044 4.044 6 C -0.120 4.120 7 C -0.108 4.108 8 C 0.532 3.468 9 O -0.555 6.555 10 N -0.701 5.701 11 C 0.151 3.849 12 H 0.082 0.918 13 C -0.161 4.161 14 C -0.134 4.134 15 C 0.175 3.825 16 H 0.048 0.952 17 C -0.163 4.163 18 N -0.727 5.727 19 C -0.315 4.315 20 H 0.061 0.939 21 C -0.038 4.038 22 N -0.944 5.944 23 Si 1.067 2.933 24 H -0.290 1.290 25 H -0.298 1.298 26 H -0.290 1.290 27 C 0.163 3.837 28 F -0.116 7.116 29 C -0.193 4.193 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.096 0.904 37 H 0.399 0.601 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.053 0.947 44 H 0.036 0.964 45 H 0.043 0.957 46 H 0.360 0.640 47 H 0.248 0.752 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.306 -2.115 -4.469 14.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.102 3.898 4 C -0.241 4.241 5 C -0.062 4.062 6 C -0.122 4.122 7 C -0.148 4.148 8 C 0.319 3.681 9 O -0.434 6.434 10 N -0.353 5.353 11 C 0.046 3.954 12 H 0.100 0.900 13 C -0.220 4.220 14 C -0.173 4.173 15 C 0.065 3.935 16 H 0.066 0.934 17 C -0.223 4.223 18 N -0.371 5.371 19 C -0.446 4.446 20 H 0.079 0.921 21 C -0.234 4.234 22 N -0.591 5.591 23 Si 0.899 3.101 24 H -0.218 1.218 25 H -0.225 1.225 26 H -0.216 1.216 27 C 0.143 3.857 28 F -0.094 7.094 29 C -0.212 4.212 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.074 0.926 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.114 0.886 37 H 0.235 0.765 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.072 0.928 44 H 0.055 0.945 45 H 0.062 0.938 46 H 0.195 0.805 47 H 0.060 0.940 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.948 -3.856 -3.864 14.052 hybrid contribution -0.093 1.493 -0.916 1.754 sum -13.042 -2.363 -4.780 14.090 Atomic orbital electron populations 1.23048 0.78399 1.03778 1.01460 1.86048 1.21340 1.26826 1.88765 1.18511 0.91304 0.84189 0.95785 1.21107 0.99914 0.92024 1.11055 1.20601 0.92749 0.97321 0.95559 1.19349 0.93644 0.93720 1.05487 1.20653 1.04078 0.93775 0.96248 1.20236 0.76671 0.80712 0.90503 1.90627 1.54764 1.51633 1.46376 1.45928 1.59636 1.21056 1.08647 1.20776 0.93295 0.97854 0.83517 0.89983 1.22199 0.98978 1.00516 1.00258 1.22220 0.95549 0.98046 1.01462 1.20204 0.91085 0.94952 0.87221 0.93383 1.22406 1.00907 1.00222 0.98766 1.42457 1.50401 1.37704 1.06548 1.20023 1.19787 1.08048 0.96753 0.92109 1.25466 1.01226 1.03977 0.92771 1.70947 1.28687 1.22076 1.37429 0.83388 0.75068 0.75780 0.75858 1.21788 1.22462 1.21578 1.17165 0.77698 0.92900 0.97955 1.91641 1.27867 1.96968 1.92882 1.20174 0.92448 0.97542 1.11034 0.92577 0.88346 0.92580 0.85211 0.85147 0.85052 0.88595 0.76471 0.92437 0.92897 0.92192 0.91920 0.90816 0.92814 0.94527 0.93772 0.80520 0.94037 0.84162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -4.09 10.50 -19.41 -0.20 -4.30 16 3 C 0.15 2.17 6.68 -39.23 -0.26 1.91 16 4 C -0.22 -2.94 9.04 -39.42 -0.36 -3.29 16 5 C -0.04 -0.64 9.67 -39.61 -0.38 -1.02 16 6 C -0.12 -2.15 4.38 -104.53 -0.46 -2.61 16 7 C -0.11 -1.99 5.60 -29.03 -0.16 -2.15 16 8 C 0.53 10.54 7.79 -10.98 -0.09 10.45 16 9 O -0.56 -12.45 15.70 5.56 0.09 -12.37 16 10 N -0.70 -12.49 3.80 -53.81 -0.20 -12.70 16 11 C 0.15 2.45 2.58 -67.93 -0.17 2.28 16 12 H 0.08 1.56 7.58 -51.93 -0.39 1.16 16 13 C -0.16 -2.17 9.48 37.16 0.35 -1.82 16 14 C -0.13 -2.04 4.43 -26.73 -0.12 -2.15 16 15 C 0.18 3.33 2.89 -67.93 -0.20 3.14 16 16 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 17 C -0.16 -2.86 9.49 37.16 0.35 -2.51 16 18 N -0.73 -16.45 3.84 -53.43 -0.21 -16.66 16 19 C -0.32 -8.39 9.93 -15.06 -0.15 -8.54 16 20 H 0.06 1.69 7.83 -52.48 -0.41 1.28 16 21 C -0.04 -1.03 5.50 -17.43 -0.10 -1.12 16 22 N -0.94 -26.23 13.44 55.49 0.75 -25.49 16 23 Si 1.07 26.10 29.92 -169.99 -5.09 21.01 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.30 -7.03 7.11 56.52 0.40 -6.62 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 C 0.16 3.14 7.24 -39.44 -0.29 2.86 16 28 F -0.12 -2.61 16.56 2.25 0.04 -2.58 16 29 C -0.19 -3.23 9.97 -39.37 -0.39 -3.63 16 30 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 31 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.39 7.66 -51.93 -0.40 0.00 16 33 H 0.13 1.28 6.30 -52.49 -0.33 0.95 16 34 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 35 H 0.13 2.88 7.53 -51.93 -0.39 2.49 16 36 H 0.10 1.44 8.05 -51.93 -0.42 1.03 16 37 H 0.40 7.02 6.51 -40.82 -0.27 6.76 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.36 8.09 4.54 -40.82 -0.19 7.91 16 47 H 0.25 6.62 6.77 -40.82 -0.28 6.35 16 48 H 0.14 2.17 8.06 -52.49 -0.42 1.74 16 LS Contribution 397.45 15.07 5.99 5.99 Total: -1.00 -32.01 397.45 -7.60 -39.61 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: -7.33 Total: 14.47 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -1.42 Total: -7.00 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: 0.34 Total: -54.84 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.12 Total: -16.66 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.04 Total: -2.58 kcal Atomic # 14 Polarization: 26.10 SS G_CDS: -5.09 Total: 21.01 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.01 -7.60 -39.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135824855.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.979 kcal (2) G-P(sol) polarization free energy of solvation -32.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds