Wall clock time and date at job start Tue Mar 31 2020 22:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35895 * 117.00298 * 2 1 4 4 C 1.38773 * 120.03760 * 0.02562 * 3 2 1 5 5 C 1.38139 * 119.99347 * 179.70267 * 4 3 2 6 6 C 1.38255 * 120.07357 * 0.52932 * 5 4 3 7 7 C 1.50705 * 119.95195 * 179.77107 * 6 5 4 8 8 C 1.50707 * 109.46669 * 264.72020 * 7 6 5 9 9 O 1.21281 * 119.99843 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99794 * 180.02562 * 8 7 6 11 11 C 1.46495 * 119.99718 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.47210 * 324.99916 * 11 10 8 13 13 C 1.52999 * 109.47389 * 85.00140 * 11 10 8 14 14 C 1.53006 * 109.46696 * 204.99517 * 11 10 8 15 15 C 1.52997 * 109.46841 * 65.00499 * 14 11 10 16 16 H 1.09005 * 109.47159 * 54.99606 * 15 14 11 17 17 C 1.52999 * 109.47264 * 174.99605 * 15 14 11 18 18 N 1.46498 * 109.47167 * 294.99436 * 15 14 11 19 19 C 1.36935 * 120.00239 * 154.99975 * 18 15 14 20 20 H 1.08004 * 120.00069 * 0.02562 * 19 18 15 21 21 C 1.38811 * 120.00368 * 180.02562 * 19 18 15 22 22 N 1.31624 * 119.99540 * 359.72375 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46758 * 269.72270 * 23 21 19 25 25 H 1.48499 * 109.47026 * 29.72118 * 23 21 19 26 26 H 1.48496 * 109.47474 * 149.72153 * 23 21 19 27 27 C 1.38472 * 120.08871 * 359.48801 * 6 5 4 28 28 F 1.35104 * 119.99728 * 180.25574 * 27 6 5 29 29 C 1.38388 * 120.00358 * 0.23465 * 27 6 5 30 30 H 1.08993 * 109.47337 * 59.99999 * 1 2 3 31 31 H 1.09005 * 109.47096 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47335 * 299.99876 * 1 2 3 33 33 H 1.07999 * 120.00751 * 359.97438 * 4 3 2 34 34 H 1.07999 * 119.96274 * 180.29466 * 5 4 3 35 35 H 1.08997 * 109.47232 * 144.72525 * 7 6 5 36 36 H 1.08997 * 109.47322 * 24.71779 * 7 6 5 37 37 H 0.96997 * 119.99976 * 359.97438 * 10 8 7 38 38 H 1.09000 * 109.47086 * 299.99744 * 13 11 10 39 39 H 1.09007 * 109.47428 * 59.99518 * 13 11 10 40 40 H 1.09001 * 109.47632 * 179.97438 * 13 11 10 41 41 H 1.08996 * 109.47489 * 304.99916 * 14 11 10 42 42 H 1.09001 * 109.46720 * 184.99882 * 14 11 10 43 43 H 1.08994 * 109.47214 * 179.97438 * 17 15 14 44 44 H 1.08994 * 109.47102 * 299.99987 * 17 15 14 45 45 H 1.09005 * 109.47033 * 59.99923 * 17 15 14 46 46 H 0.97004 * 119.99747 * 335.00715 * 18 15 14 47 47 H 0.97000 * 120.00481 * 0.27542 * 22 21 19 48 48 H 1.07996 * 120.03775 * 179.97438 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2910 2.3752 0.0005 5 6 1.9192 3.6055 0.0067 6 6 3.2998 3.6785 0.0014 7 6 3.9822 5.0222 0.0030 8 6 4.3205 5.4154 -1.4121 9 8 4.0350 4.6774 -2.3312 10 7 4.9401 6.5872 -1.6560 11 6 5.2684 6.9696 -3.0315 12 1 5.5353 6.0801 -3.6021 13 6 4.0562 7.6445 -3.6764 14 6 6.4490 7.9429 -3.0223 15 6 7.6942 7.2290 -2.4925 16 1 7.8763 6.3304 -3.0820 17 6 8.9016 8.1626 -2.5996 18 7 7.4858 6.8594 -1.0903 19 6 8.1793 5.8103 -0.5484 20 1 8.8803 5.2557 -1.1546 21 6 7.9814 5.4597 0.7800 22 7 7.1311 6.1391 1.5203 23 14 8.9279 4.0291 1.5195 24 1 8.1523 2.7758 1.3379 25 1 10.2420 3.9009 0.8398 26 1 9.1419 4.2733 2.9686 27 6 4.0563 2.5188 0.0005 28 9 5.4054 2.5923 0.0004 29 6 3.4307 1.2844 0.0000 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 0.2125 2.3196 0.0005 34 1 1.3311 4.5113 0.0120 35 1 4.8971 4.9644 0.5925 36 1 3.3162 5.7675 0.4378 37 1 5.1681 7.1775 -0.9209 38 1 3.2151 6.9512 -3.6830 39 1 3.7893 8.5341 -3.1058 40 1 4.3006 7.9295 -4.6998 41 1 6.2153 8.7914 -2.3792 42 1 6.6365 8.2962 -4.0362 43 1 9.7886 7.6542 -2.2218 44 1 9.0567 8.4377 -3.6428 45 1 8.7195 9.0612 -2.0101 46 1 6.8564 7.3577 -0.5458 47 1 6.6398 6.8822 1.1365 48 1 4.0202 0.3795 -0.0011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135824855.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:41 Heat of formation + Delta-G solvation = -103.994158 kcal Electronic energy + Delta-G solvation = -30904.773272 eV Core-core repulsion = 26681.152662 eV Total energy + Delta-G solvation = -4223.620610 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.95573 -41.26940 -40.69988 -38.73814 -38.06545 -35.96629 -34.27001 -33.43302 -32.02239 -31.59696 -30.03285 -28.82600 -27.68724 -27.35606 -25.47172 -23.98695 -23.27759 -22.14314 -21.78554 -21.06339 -19.46991 -19.36429 -18.07321 -18.01461 -17.38044 -17.02475 -16.86008 -16.74608 -16.37200 -16.30817 -15.99185 -15.76445 -15.57754 -15.41162 -14.84546 -14.67938 -14.47235 -14.34255 -13.91012 -13.56730 -13.49250 -13.33275 -13.28881 -13.15747 -12.89006 -12.83944 -12.66203 -12.57599 -12.50752 -12.18687 -11.93425 -11.92046 -11.88648 -11.77980 -11.62660 -11.11956 -10.87558 -10.79254 -9.92540 -9.88065 -9.20199 -8.90221 -8.21738 -5.14107 0.10513 0.21003 1.54769 1.64965 1.74489 1.78119 2.16500 2.32718 2.65652 2.71558 3.41715 3.51654 3.67451 3.69391 3.70522 3.85812 3.91615 4.07523 4.14468 4.20205 4.30295 4.30953 4.41986 4.43709 4.47824 4.51276 4.62646 4.75883 4.76071 4.76688 4.79311 4.85718 4.98633 4.99487 5.02096 5.03262 5.09812 5.17117 5.31422 5.33552 5.34140 5.53777 5.66121 5.71193 5.74356 6.33047 6.65027 6.68912 7.23900 7.39274 8.11358 8.24429 9.28966 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.004283 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.908061 B = 6535.185006 C = 8361.634614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.330 6.330 3 C 0.151 3.849 4 C -0.206 4.206 5 C -0.039 4.039 6 C -0.142 4.142 7 C -0.101 4.101 8 C 0.526 3.474 9 O -0.587 6.587 10 N -0.695 5.695 11 C 0.146 3.854 12 H 0.048 0.952 13 C -0.149 4.149 14 C -0.120 4.120 15 C 0.167 3.833 16 H 0.021 0.979 17 C -0.153 4.153 18 N -0.729 5.729 19 C -0.315 4.315 20 H 0.041 0.959 21 C -0.075 4.075 22 N -0.959 5.959 23 Si 1.095 2.905 24 H -0.299 1.299 25 H -0.285 1.285 26 H -0.289 1.289 27 C 0.119 3.881 28 F -0.150 7.150 29 C -0.208 4.208 30 H 0.069 0.931 31 H 0.122 0.878 32 H 0.073 0.927 33 H 0.174 0.826 34 H 0.165 0.835 35 H 0.093 0.907 36 H 0.128 0.872 37 H 0.400 0.600 38 H 0.040 0.960 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.108 0.892 43 H 0.025 0.975 44 H 0.070 0.930 45 H 0.049 0.951 46 H 0.362 0.638 47 H 0.249 0.751 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.044 -0.707 -5.254 16.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.244 6.244 3 C 0.105 3.895 4 C -0.224 4.224 5 C -0.057 4.057 6 C -0.143 4.143 7 C -0.140 4.140 8 C 0.313 3.687 9 O -0.469 6.469 10 N -0.346 5.346 11 C 0.042 3.958 12 H 0.067 0.933 13 C -0.207 4.207 14 C -0.158 4.158 15 C 0.059 3.941 16 H 0.039 0.961 17 C -0.212 4.212 18 N -0.374 5.374 19 C -0.447 4.447 20 H 0.059 0.941 21 C -0.269 4.269 22 N -0.607 5.607 23 Si 0.925 3.075 24 H -0.227 1.227 25 H -0.212 1.212 26 H -0.215 1.215 27 C 0.100 3.900 28 F -0.129 7.129 29 C -0.227 4.227 30 H 0.087 0.913 31 H 0.140 0.860 32 H 0.091 0.909 33 H 0.191 0.809 34 H 0.182 0.818 35 H 0.111 0.889 36 H 0.146 0.854 37 H 0.237 0.763 38 H 0.059 0.941 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.126 0.874 43 H 0.044 0.956 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.196 0.804 47 H 0.060 0.940 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.677 -2.415 -4.676 16.537 hybrid contribution 0.659 0.968 -0.737 1.384 sum -15.018 -1.447 -5.414 16.029 Atomic orbital electron populations 1.23470 0.75593 1.05999 1.02859 1.86050 1.24173 1.25886 1.88255 1.18580 0.90624 0.85630 0.94617 1.21559 1.01900 0.90665 1.08278 1.21000 0.91359 0.99368 0.94002 1.19508 0.95171 0.92678 1.06976 1.20557 1.03156 0.95439 0.94883 1.20530 0.76555 0.80804 0.90769 1.90595 1.56330 1.52580 1.47365 1.45979 1.58638 1.20488 1.09500 1.20911 0.95359 0.97127 0.82427 0.93337 1.22078 0.96620 1.00355 1.01620 1.22132 0.92677 0.97461 1.03507 1.20414 0.93958 0.94812 0.84959 0.96066 1.22254 0.98603 0.99443 1.00939 1.42460 1.50047 1.36854 1.08062 1.20054 1.19375 1.08722 0.96576 0.94054 1.26140 1.01977 1.05293 0.93514 1.70972 1.29349 1.22681 1.37699 0.82994 0.74877 0.74095 0.75515 1.22713 1.21156 1.21501 1.17641 0.76595 0.94749 1.01025 1.91537 1.30456 1.97222 1.93645 1.20260 0.94006 0.96677 1.11806 0.91286 0.85999 0.90874 0.80902 0.81792 0.88905 0.85373 0.76307 0.94052 0.90982 0.89782 0.90244 0.87366 0.95551 0.91118 0.93146 0.80350 0.93988 0.84259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -7.91 10.50 -92.37 -0.97 -8.88 16 3 C 0.15 4.29 6.68 22.50 0.15 4.44 16 4 C -0.21 -4.84 9.04 22.37 0.20 -4.64 16 5 C -0.04 -1.07 9.67 22.25 0.22 -0.85 16 6 C -0.14 -5.17 4.38 -19.80 -0.09 -5.26 16 7 C -0.10 -3.82 5.60 29.11 0.16 -3.66 16 8 C 0.53 21.38 7.79 87.66 0.68 22.06 16 9 O -0.59 -27.23 15.70 -3.03 -0.05 -27.27 16 10 N -0.70 -24.89 3.80 -442.53 -1.68 -26.57 16 11 C 0.15 4.64 2.58 44.99 0.12 4.76 16 12 H 0.05 1.88 7.58 -2.39 -0.02 1.86 16 13 C -0.15 -3.64 9.48 71.98 0.68 -2.96 16 14 C -0.12 -3.36 4.43 30.60 0.14 -3.22 16 15 C 0.17 6.30 2.89 44.99 0.13 6.43 16 16 H 0.02 0.91 8.08 -2.38 -0.02 0.89 16 17 C -0.15 -5.15 9.49 71.98 0.68 -4.47 16 18 N -0.73 -33.58 3.84 -322.94 -1.24 -34.82 16 19 C -0.32 -17.37 9.93 84.03 0.83 -16.53 16 20 H 0.04 2.40 7.83 -2.91 -0.02 2.38 16 21 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 22 N -0.96 -54.54 13.44 21.65 0.29 -54.25 16 23 Si 1.10 54.71 29.92 68.60 2.05 56.77 16 24 H -0.30 -15.28 7.11 99.48 0.71 -14.57 16 25 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 26 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 27 C 0.12 4.90 7.24 22.36 0.16 5.06 16 28 F -0.15 -7.42 16.56 44.97 0.74 -6.68 16 29 C -0.21 -7.28 9.97 22.41 0.22 -7.06 16 30 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 31 H 0.12 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.07 0.71 7.66 -2.39 -0.02 0.70 16 33 H 0.17 2.53 6.30 -2.91 -0.02 2.51 16 34 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 35 H 0.09 4.31 7.53 -2.39 -0.02 4.29 16 36 H 0.13 3.79 8.05 -2.39 -0.02 3.77 16 37 H 0.40 14.06 6.51 -92.71 -0.60 13.45 16 38 H 0.04 1.15 8.14 -2.39 -0.02 1.14 16 39 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.08 2.03 8.14 -2.39 -0.02 2.02 16 42 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 46 H 0.36 16.38 4.54 -92.71 -0.42 15.96 16 47 H 0.25 13.55 6.77 -92.71 -0.63 12.93 16 48 H 0.14 4.65 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -74.73 397.45 5.12 -69.61 By element: Atomic # 1 Polarization: 40.34 SS G_CDS: 0.09 Total: 40.44 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: 5.87 Total: -8.36 kcal Atomic # 7 Polarization: -113.00 SS G_CDS: -2.63 Total: -115.63 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -1.02 Total: -36.15 kcal Atomic # 9 Polarization: -7.42 SS G_CDS: 0.74 Total: -6.68 kcal Atomic # 14 Polarization: 54.71 SS G_CDS: 2.05 Total: 56.77 kcal Total: -74.73 5.12 -69.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135824855.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.380 kcal (2) G-P(sol) polarization free energy of solvation -74.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds