Wall clock time and date at job start Tue Mar 31 2020 22:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35894 * 117.00503 * 2 1 4 4 C 1.38776 * 120.03971 * 0.02562 * 3 2 1 5 5 C 1.38132 * 119.99244 * 179.69910 * 4 3 2 6 6 C 1.38252 * 120.08352 * 0.53252 * 5 4 3 7 7 C 1.50697 * 119.96152 * 179.76230 * 6 5 4 8 8 C 1.50698 * 109.47331 * 264.72562 * 7 6 5 9 9 O 1.21284 * 120.00180 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00047 * 179.97438 * 8 7 6 11 11 C 1.46494 * 119.99979 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47123 * 35.00778 * 11 10 8 13 13 C 1.53002 * 109.47520 * 275.00457 * 11 10 8 14 14 C 1.53003 * 109.47333 * 155.00547 * 11 10 8 15 15 C 1.53004 * 109.46807 * 295.00361 * 14 11 10 16 16 H 1.08995 * 109.47216 * 304.99653 * 15 14 11 17 17 C 1.52999 * 109.47083 * 184.99648 * 15 14 11 18 18 N 1.46498 * 109.47065 * 64.99542 * 15 14 11 19 19 C 1.36943 * 119.99752 * 204.72207 * 18 15 14 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 15 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 15 22 22 N 1.31624 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47213 * 60.00246 * 23 21 19 25 25 H 1.48502 * 109.47317 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47081 * 299.99875 * 23 21 19 27 27 C 1.38480 * 120.07886 * 359.48926 * 6 5 4 28 28 F 1.35102 * 119.99367 * 180.25601 * 27 6 5 29 29 C 1.38379 * 120.00965 * 0.23437 * 27 6 5 30 30 H 1.09001 * 109.47432 * 59.99537 * 1 2 3 31 31 H 1.09002 * 109.47515 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46994 * 300.00261 * 1 2 3 33 33 H 1.08001 * 120.00326 * 359.97438 * 4 3 2 34 34 H 1.08001 * 119.96006 * 180.29198 * 5 4 3 35 35 H 1.08998 * 109.47375 * 144.72313 * 7 6 5 36 36 H 1.09004 * 109.46545 * 24.72511 * 7 6 5 37 37 H 0.96999 * 119.99718 * 0.02562 * 10 8 7 38 38 H 1.09000 * 109.47436 * 180.02562 * 13 11 10 39 39 H 1.09002 * 109.47185 * 300.00284 * 13 11 10 40 40 H 1.09004 * 109.46882 * 60.00056 * 13 11 10 41 41 H 1.08993 * 109.47316 * 175.00453 * 14 11 10 42 42 H 1.08998 * 109.46869 * 54.99922 * 14 11 10 43 43 H 1.08995 * 109.47098 * 300.00077 * 17 15 14 44 44 H 1.09003 * 109.47054 * 59.99725 * 17 15 14 45 45 H 1.08996 * 109.47245 * 179.97438 * 17 15 14 46 46 H 0.97001 * 120.00384 * 25.00562 * 18 15 14 47 47 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 48 48 H 1.08001 * 120.04300 * 180.02562 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2911 2.3752 0.0005 5 6 1.9193 3.6054 0.0068 6 6 3.2999 3.6786 0.0015 7 6 3.9823 5.0221 0.0029 8 6 4.3206 5.4153 -1.4120 9 8 4.0351 4.6774 -2.3312 10 7 4.9394 6.5875 -1.6561 11 6 5.2687 6.9695 -3.0315 12 1 4.4896 6.6114 -3.7044 13 6 6.6095 6.3473 -3.4265 14 6 5.3654 8.4934 -3.1284 15 6 3.9921 9.1099 -2.8547 16 1 3.2576 8.6770 -3.5338 17 6 4.0595 10.6227 -3.0734 18 7 3.5998 8.8336 -1.4706 19 6 2.2748 8.8157 -1.1250 20 1 1.5189 9.0010 -1.8739 21 6 1.9033 8.5596 0.1877 22 7 2.8246 8.3344 1.1004 23 14 0.0959 8.5346 0.6589 24 1 -0.6052 7.4851 -0.1236 25 1 -0.0336 8.2411 2.1089 26 1 -0.5103 9.8582 0.3663 27 6 4.0563 2.5187 0.0005 28 9 5.4054 2.5922 0.0004 29 6 3.4307 1.2844 -0.0001 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.2125 2.3196 0.0005 34 1 1.3313 4.5113 0.0120 35 1 4.8973 4.9643 0.5925 36 1 3.3163 5.7674 0.4378 37 1 5.1674 7.1778 -0.9209 38 1 6.8547 6.6319 -4.4498 39 1 7.3886 6.7054 -2.7536 40 1 6.5406 5.2616 -3.3576 41 1 5.6967 8.7736 -4.1282 42 1 6.0812 8.8595 -2.3924 43 1 4.7939 11.0556 -2.3943 44 1 4.3514 10.8283 -4.1033 45 1 3.0810 11.0619 -2.8789 46 1 4.2787 8.6673 -0.7980 47 1 2.5649 8.1550 2.0176 48 1 4.0202 0.3794 -0.0004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135824856.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:46 Heat of formation + Delta-G solvation = -88.100024 kcal Electronic energy + Delta-G solvation = -30661.738980 eV Core-core repulsion = 26438.807591 eV Total energy + Delta-G solvation = -4222.931389 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.69730 -40.07957 -39.21548 -37.41878 -36.55542 -34.13429 -32.41185 -31.96347 -30.69968 -30.30777 -28.58119 -27.86071 -26.39675 -26.13837 -23.68533 -22.76859 -21.98013 -20.73332 -20.19980 -19.41520 -18.39911 -17.20811 -16.86498 -16.46694 -16.00793 -15.84581 -15.80777 -15.23467 -15.08539 -14.82104 -14.60651 -14.20610 -13.83940 -13.72639 -13.44754 -13.24897 -12.88014 -12.80221 -12.67390 -12.39262 -12.31050 -12.13288 -11.92543 -11.77658 -11.64846 -11.42677 -11.30194 -10.98414 -10.86906 -10.86355 -10.76772 -10.72594 -10.34380 -10.29108 -9.91194 -9.70666 -9.15458 -8.98521 -8.70980 -8.27656 -8.00879 -6.97713 -5.84219 -3.10004 1.31518 1.43721 3.10764 3.37056 3.42696 3.43606 3.45040 3.65459 4.05159 4.54045 4.57143 4.80182 4.99298 5.03402 5.03567 5.06560 5.13290 5.31749 5.41741 5.43195 5.47053 5.52045 5.54706 5.67732 5.71787 5.86325 5.91789 6.01224 6.03941 6.13504 6.16779 6.20687 6.25890 6.33835 6.39178 6.40138 6.45090 6.58262 6.62005 6.70393 6.83920 6.86303 7.05813 7.27135 7.33539 7.65798 8.28171 8.36354 9.01733 9.46613 10.01678 10.37728 11.38180 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010280 B = 0.004275 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.198901 B = 6548.349494 C = 8430.285448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.317 6.317 3 C 0.145 3.855 4 C -0.216 4.216 5 C -0.035 4.035 6 C -0.115 4.115 7 C -0.105 4.105 8 C 0.534 3.466 9 O -0.560 6.560 10 N -0.697 5.697 11 C 0.151 3.849 12 H 0.081 0.919 13 C -0.162 4.162 14 C -0.133 4.133 15 C 0.169 3.831 16 H 0.047 0.953 17 C -0.164 4.164 18 N -0.716 5.716 19 C -0.224 4.224 20 H 0.066 0.934 21 C -0.011 4.011 22 N -0.935 5.935 23 Si 0.896 3.104 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.288 1.288 27 C 0.148 3.852 28 F -0.134 7.134 29 C -0.192 4.192 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.132 0.868 34 H 0.138 0.862 35 H 0.094 0.906 36 H 0.133 0.867 37 H 0.405 0.595 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.045 0.955 44 H 0.035 0.965 45 H 0.052 0.948 46 H 0.378 0.622 47 H 0.255 0.745 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.123 -9.776 -2.514 10.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.100 3.900 4 C -0.235 4.235 5 C -0.053 4.053 6 C -0.117 4.117 7 C -0.145 4.145 8 C 0.321 3.679 9 O -0.440 6.440 10 N -0.350 5.350 11 C 0.046 3.954 12 H 0.099 0.901 13 C -0.221 4.221 14 C -0.172 4.172 15 C 0.060 3.940 16 H 0.065 0.935 17 C -0.224 4.224 18 N -0.359 5.359 19 C -0.356 4.356 20 H 0.084 0.916 21 C -0.207 4.207 22 N -0.585 5.585 23 Si 0.727 3.273 24 H -0.214 1.214 25 H -0.217 1.217 26 H -0.215 1.215 27 C 0.129 3.871 28 F -0.112 7.112 29 C -0.211 4.211 30 H 0.076 0.924 31 H 0.117 0.883 32 H 0.075 0.925 33 H 0.149 0.851 34 H 0.156 0.844 35 H 0.112 0.888 36 H 0.151 0.849 37 H 0.242 0.758 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.064 0.936 44 H 0.054 0.946 45 H 0.071 0.929 46 H 0.214 0.786 47 H 0.065 0.935 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.877 -10.478 -3.153 11.102 hybrid contribution -0.817 0.568 0.898 1.341 sum 1.060 -9.909 -2.254 10.218 Atomic orbital electron populations 1.23067 0.78242 1.03778 1.01692 1.86022 1.21474 1.26788 1.88793 1.18521 0.91325 0.84213 0.95930 1.21219 1.00227 0.91991 1.10064 1.20812 0.93093 0.97734 0.93681 1.19396 0.93885 0.93517 1.04885 1.20618 1.02945 0.94946 0.95943 1.20160 0.76272 0.81016 0.90480 1.90623 1.54402 1.52548 1.46388 1.45920 1.59892 1.20417 1.08744 1.20763 0.96209 0.93949 0.84525 0.90088 1.22207 0.97533 1.01493 1.00820 1.22200 0.99205 0.94045 1.01738 1.20279 0.92904 0.92243 0.88601 0.93480 1.22423 1.01524 0.99733 0.98704 1.42460 1.05012 1.84581 1.03865 1.19180 0.83946 1.39212 0.93226 0.91577 1.24562 0.96838 1.03296 0.95968 1.69582 1.30999 1.56032 1.01866 0.86436 0.85742 0.77886 0.77209 1.21438 1.21693 1.21530 1.17055 0.76739 0.93114 1.00203 1.91476 1.29023 1.97113 1.93591 1.20055 0.92420 0.97213 1.11440 0.92437 0.88320 0.92484 0.85056 0.84382 0.88797 0.84893 0.75788 0.92299 0.92860 0.92443 0.90940 0.91757 0.93600 0.94611 0.92918 0.78643 0.93513 0.84356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.08 10.49 -19.41 -0.20 -4.29 16 3 C 0.15 2.13 6.69 -39.22 -0.26 1.86 16 4 C -0.22 -3.15 9.04 -39.42 -0.36 -3.51 16 5 C -0.04 -0.59 9.67 -39.62 -0.38 -0.97 16 6 C -0.12 -2.05 4.38 -104.53 -0.46 -2.51 16 7 C -0.10 -1.93 5.60 -29.04 -0.16 -2.09 16 8 C 0.53 10.62 7.79 -10.99 -0.09 10.53 16 9 O -0.56 -12.60 15.70 5.55 0.09 -12.51 16 10 N -0.70 -12.54 3.80 -53.81 -0.20 -12.75 16 11 C 0.15 2.46 2.57 -67.93 -0.17 2.28 16 12 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 13 C -0.16 -2.28 9.48 37.16 0.35 -1.92 16 14 C -0.13 -2.00 4.43 -26.73 -0.12 -2.12 16 15 C 0.17 3.10 2.89 -67.93 -0.20 2.91 16 16 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 17 C -0.16 -2.77 9.49 37.16 0.35 -2.42 16 18 N -0.72 -15.66 3.84 -53.43 -0.21 -15.87 16 19 C -0.22 -5.63 9.93 -15.06 -0.15 -5.78 16 20 H 0.07 1.69 7.83 -52.49 -0.41 1.28 16 21 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 22 N -0.94 -24.14 12.83 55.49 0.71 -23.43 16 23 Si 0.90 20.89 29.55 -169.99 -5.02 15.87 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 27 C 0.15 2.52 7.24 -39.44 -0.29 2.23 16 28 F -0.13 -2.28 16.56 2.25 0.04 -2.24 16 29 C -0.19 -2.93 9.97 -39.37 -0.39 -3.33 16 30 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 31 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 33 H 0.13 1.56 6.30 -52.49 -0.33 1.23 16 34 H 0.14 2.35 8.06 -52.49 -0.42 1.93 16 35 H 0.09 1.57 7.79 -51.93 -0.40 1.16 16 36 H 0.13 2.69 7.82 -51.93 -0.41 2.29 16 37 H 0.40 7.31 6.51 -40.82 -0.27 7.04 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 46 H 0.38 8.47 5.71 -40.82 -0.23 8.24 16 47 H 0.25 6.57 8.31 -40.82 -0.34 6.23 16 48 H 0.14 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 399.21 15.07 6.02 6.02 Total: -1.00 -28.89 399.21 -7.65 -36.55 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: -7.44 Total: 16.64 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -1.42 Total: -3.99 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: 0.30 Total: -52.04 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.12 Total: -16.80 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -28.89 -7.65 -36.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135824856.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.554 kcal (2) G-P(sol) polarization free energy of solvation -28.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds