Wall clock time and date at job start Tue Mar 31 2020 22:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35894 * 117.00503 * 2 1 4 4 C 1.38776 * 120.03971 * 0.02562 * 3 2 1 5 5 C 1.38132 * 119.99244 * 179.69910 * 4 3 2 6 6 C 1.38252 * 120.08352 * 0.53252 * 5 4 3 7 7 C 1.50697 * 119.96152 * 179.76230 * 6 5 4 8 8 C 1.50698 * 109.47331 * 264.72562 * 7 6 5 9 9 O 1.21284 * 120.00180 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00047 * 179.97438 * 8 7 6 11 11 C 1.46494 * 119.99979 * 179.97438 * 10 8 7 12 12 H 1.09002 * 109.47123 * 35.00778 * 11 10 8 13 13 C 1.53002 * 109.47520 * 275.00457 * 11 10 8 14 14 C 1.53003 * 109.47333 * 155.00547 * 11 10 8 15 15 C 1.53004 * 109.46807 * 295.00361 * 14 11 10 16 16 H 1.08995 * 109.47216 * 304.99653 * 15 14 11 17 17 C 1.52999 * 109.47083 * 184.99648 * 15 14 11 18 18 N 1.46498 * 109.47065 * 64.99542 * 15 14 11 19 19 C 1.36943 * 119.99752 * 204.72207 * 18 15 14 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 15 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 15 22 22 N 1.31624 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47213 * 60.00246 * 23 21 19 25 25 H 1.48502 * 109.47317 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47081 * 299.99875 * 23 21 19 27 27 C 1.38480 * 120.07886 * 359.48926 * 6 5 4 28 28 F 1.35102 * 119.99367 * 180.25601 * 27 6 5 29 29 C 1.38379 * 120.00965 * 0.23437 * 27 6 5 30 30 H 1.09001 * 109.47432 * 59.99537 * 1 2 3 31 31 H 1.09002 * 109.47515 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46994 * 300.00261 * 1 2 3 33 33 H 1.08001 * 120.00326 * 359.97438 * 4 3 2 34 34 H 1.08001 * 119.96006 * 180.29198 * 5 4 3 35 35 H 1.08998 * 109.47375 * 144.72313 * 7 6 5 36 36 H 1.09004 * 109.46545 * 24.72511 * 7 6 5 37 37 H 0.96999 * 119.99718 * 0.02562 * 10 8 7 38 38 H 1.09000 * 109.47436 * 180.02562 * 13 11 10 39 39 H 1.09002 * 109.47185 * 300.00284 * 13 11 10 40 40 H 1.09004 * 109.46882 * 60.00056 * 13 11 10 41 41 H 1.08993 * 109.47316 * 175.00453 * 14 11 10 42 42 H 1.08998 * 109.46869 * 54.99922 * 14 11 10 43 43 H 1.08995 * 109.47098 * 300.00077 * 17 15 14 44 44 H 1.09003 * 109.47054 * 59.99725 * 17 15 14 45 45 H 1.08996 * 109.47245 * 179.97438 * 17 15 14 46 46 H 0.97001 * 120.00384 * 25.00562 * 18 15 14 47 47 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 48 48 H 1.08001 * 120.04300 * 180.02562 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2911 2.3752 0.0005 5 6 1.9193 3.6054 0.0068 6 6 3.2999 3.6786 0.0015 7 6 3.9823 5.0221 0.0029 8 6 4.3206 5.4153 -1.4120 9 8 4.0351 4.6774 -2.3312 10 7 4.9394 6.5875 -1.6561 11 6 5.2687 6.9695 -3.0315 12 1 4.4896 6.6114 -3.7044 13 6 6.6095 6.3473 -3.4265 14 6 5.3654 8.4934 -3.1284 15 6 3.9921 9.1099 -2.8547 16 1 3.2576 8.6770 -3.5338 17 6 4.0595 10.6227 -3.0734 18 7 3.5998 8.8336 -1.4706 19 6 2.2748 8.8157 -1.1250 20 1 1.5189 9.0010 -1.8739 21 6 1.9033 8.5596 0.1877 22 7 2.8246 8.3344 1.1004 23 14 0.0959 8.5346 0.6589 24 1 -0.6052 7.4851 -0.1236 25 1 -0.0336 8.2411 2.1089 26 1 -0.5103 9.8582 0.3663 27 6 4.0563 2.5187 0.0005 28 9 5.4054 2.5922 0.0004 29 6 3.4307 1.2844 -0.0001 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.2125 2.3196 0.0005 34 1 1.3313 4.5113 0.0120 35 1 4.8973 4.9643 0.5925 36 1 3.3163 5.7674 0.4378 37 1 5.1674 7.1778 -0.9209 38 1 6.8547 6.6319 -4.4498 39 1 7.3886 6.7054 -2.7536 40 1 6.5406 5.2616 -3.3576 41 1 5.6967 8.7736 -4.1282 42 1 6.0812 8.8595 -2.3924 43 1 4.7939 11.0556 -2.3943 44 1 4.3514 10.8283 -4.1033 45 1 3.0810 11.0619 -2.8789 46 1 4.2787 8.6673 -0.7980 47 1 2.5649 8.1550 2.0176 48 1 4.0202 0.3794 -0.0004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135824856.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:45 Heat of formation + Delta-G solvation = -103.828873 kcal Electronic energy + Delta-G solvation = -30662.421034 eV Core-core repulsion = 26438.807591 eV Total energy + Delta-G solvation = -4223.613443 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.00377 -41.25488 -40.63227 -38.66216 -37.98697 -35.73963 -34.05843 -33.39371 -32.03515 -31.63708 -30.22178 -28.83749 -27.62429 -27.34043 -25.54332 -24.00510 -23.24849 -22.05582 -21.66277 -20.92613 -19.50863 -19.07443 -18.06206 -17.95623 -17.35554 -17.04469 -16.86971 -16.68956 -16.36290 -16.25839 -15.94580 -15.56015 -15.50431 -15.32349 -14.76573 -14.69227 -14.30827 -14.19447 -13.93993 -13.58932 -13.45744 -13.31117 -13.29972 -13.17073 -12.87287 -12.78121 -12.69361 -12.66254 -12.51513 -12.26031 -12.14602 -11.95303 -11.91128 -11.69778 -11.56528 -11.38921 -10.84723 -10.72208 -9.94419 -9.78290 -9.21656 -8.79755 -7.81764 -5.04774 0.07765 0.19435 1.48137 1.51308 1.54775 1.87284 2.13655 2.36001 2.62247 2.69788 3.33466 3.50734 3.65834 3.69391 3.81477 3.89104 4.01527 4.17016 4.18760 4.22681 4.27878 4.39297 4.40905 4.41498 4.52973 4.58658 4.70844 4.72984 4.83761 4.84491 4.88499 4.91806 4.94505 4.97302 5.09522 5.15366 5.16219 5.17201 5.36780 5.38905 5.43647 5.61818 5.63063 5.65087 5.84260 6.28614 6.40378 6.78061 7.48102 7.49439 8.21192 8.49093 9.39207 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010280 B = 0.004275 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.198901 B = 6548.349494 C = 8430.285448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.323 6.323 3 C 0.151 3.849 4 C -0.210 4.210 5 C -0.052 4.052 6 C -0.137 4.137 7 C -0.096 4.096 8 C 0.528 3.472 9 O -0.591 6.591 10 N -0.692 5.692 11 C 0.147 3.853 12 H 0.054 0.946 13 C -0.151 4.151 14 C -0.119 4.119 15 C 0.163 3.837 16 H 0.028 0.972 17 C -0.154 4.154 18 N -0.720 5.720 19 C -0.228 4.228 20 H 0.055 0.945 21 C -0.049 4.049 22 N -0.945 5.945 23 Si 0.939 3.061 24 H -0.288 1.288 25 H -0.294 1.294 26 H -0.292 1.292 27 C 0.135 3.865 28 F -0.139 7.139 29 C -0.194 4.194 30 H 0.063 0.937 31 H 0.127 0.873 32 H 0.067 0.933 33 H 0.159 0.841 34 H 0.128 0.872 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.405 0.595 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.035 0.965 41 H 0.107 0.893 42 H 0.076 0.924 43 H 0.047 0.953 44 H 0.068 0.932 45 H 0.029 0.971 46 H 0.375 0.625 47 H 0.250 0.750 48 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.413 -10.288 -3.214 11.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.237 6.237 3 C 0.105 3.895 4 C -0.228 4.228 5 C -0.070 4.070 6 C -0.138 4.138 7 C -0.136 4.136 8 C 0.315 3.685 9 O -0.473 6.473 10 N -0.343 5.343 11 C 0.042 3.958 12 H 0.072 0.928 13 C -0.210 4.210 14 C -0.158 4.158 15 C 0.054 3.946 16 H 0.046 0.954 17 C -0.214 4.214 18 N -0.363 5.363 19 C -0.361 4.361 20 H 0.073 0.927 21 C -0.243 4.243 22 N -0.596 5.596 23 Si 0.771 3.229 24 H -0.215 1.215 25 H -0.220 1.220 26 H -0.219 1.219 27 C 0.115 3.885 28 F -0.117 7.117 29 C -0.213 4.213 30 H 0.081 0.919 31 H 0.145 0.855 32 H 0.086 0.914 33 H 0.177 0.823 34 H 0.145 0.855 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.242 0.758 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.054 0.946 41 H 0.125 0.875 42 H 0.094 0.906 43 H 0.066 0.934 44 H 0.087 0.913 45 H 0.048 0.952 46 H 0.210 0.790 47 H 0.059 0.941 48 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.176 -10.965 -3.879 11.833 hybrid contribution -0.980 0.688 1.053 1.595 sum 1.196 -10.278 -2.826 10.726 Atomic orbital electron populations 1.23440 0.75943 1.06026 1.02490 1.86034 1.23793 1.25582 1.88268 1.18577 0.91244 0.84946 0.94753 1.21455 1.01649 0.91058 1.08647 1.20836 0.92857 0.98426 0.94878 1.19438 0.94488 0.93400 1.06491 1.20487 1.02957 0.95038 0.95072 1.20442 0.76093 0.81245 0.90732 1.90589 1.55857 1.53564 1.47288 1.45985 1.59023 1.19661 1.09619 1.20904 0.96725 0.95151 0.82993 0.92767 1.22103 0.96244 0.99850 1.02771 1.22116 0.97187 0.92410 1.04040 1.20471 0.94382 0.93489 0.86234 0.95363 1.22276 1.00371 0.97927 1.00807 1.42511 1.03754 1.84646 1.05358 1.19288 0.85290 1.38474 0.93001 0.92687 1.24978 0.99043 1.04040 0.96202 1.69660 1.31601 1.56742 1.01568 0.85747 0.83239 0.77368 0.76564 1.21457 1.22002 1.21931 1.17170 0.76609 0.93570 1.01133 1.91452 1.29313 1.97179 1.93760 1.20280 0.93181 0.97153 1.10699 0.91869 0.85506 0.91393 0.82338 0.85452 0.87765 0.87004 0.75785 0.89654 0.91359 0.94592 0.87512 0.90565 0.93363 0.91349 0.95222 0.78991 0.94095 0.82578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.81 113.37 1.11 1.33 16 2 O -0.32 -7.61 10.49 -92.36 -0.97 -8.58 16 3 C 0.15 4.22 6.69 22.50 0.15 4.37 16 4 C -0.21 -5.92 9.04 22.37 0.20 -5.72 16 5 C -0.05 -1.78 9.67 22.25 0.22 -1.56 16 6 C -0.14 -5.00 4.38 -19.80 -0.09 -5.09 16 7 C -0.10 -3.67 5.60 29.10 0.16 -3.51 16 8 C 0.53 21.64 7.79 87.66 0.68 22.32 16 9 O -0.59 -27.45 15.70 -3.04 -0.05 -27.50 16 10 N -0.69 -25.16 3.80 -442.53 -1.68 -26.84 16 11 C 0.15 4.68 2.57 44.99 0.12 4.79 16 12 H 0.05 2.04 7.58 -2.39 -0.02 2.02 16 13 C -0.15 -3.98 9.48 71.98 0.68 -3.30 16 14 C -0.12 -3.30 4.43 30.60 0.14 -3.17 16 15 C 0.16 5.81 2.89 44.99 0.13 5.94 16 16 H 0.03 1.12 8.08 -2.39 -0.02 1.10 16 17 C -0.15 -4.94 9.49 71.98 0.68 -4.26 16 18 N -0.72 -31.62 3.84 -322.94 -1.24 -32.86 16 19 C -0.23 -11.64 9.93 84.03 0.83 -10.81 16 20 H 0.06 2.88 7.83 -2.91 -0.02 2.86 16 21 C -0.05 -2.53 5.50 84.86 0.47 -2.06 16 22 N -0.95 -49.52 12.83 21.65 0.28 -49.24 16 23 Si 0.94 43.51 29.55 68.60 2.03 45.54 16 24 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 25 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 26 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 27 C 0.13 4.63 7.24 22.36 0.16 4.79 16 28 F -0.14 -4.80 16.56 44.97 0.74 -4.05 16 29 C -0.19 -5.80 9.97 22.41 0.22 -5.58 16 30 H 0.06 0.88 7.66 -2.39 -0.02 0.87 16 31 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 0.88 7.66 -2.39 -0.02 0.86 16 33 H 0.16 3.47 6.30 -2.91 -0.02 3.45 16 34 H 0.13 4.55 8.06 -2.91 -0.02 4.52 16 35 H 0.10 3.63 7.79 -2.39 -0.02 3.61 16 36 H 0.11 4.77 7.82 -2.38 -0.02 4.75 16 37 H 0.40 14.73 6.51 -92.71 -0.60 14.12 16 38 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.38 16.85 5.71 -92.71 -0.53 16.33 16 47 H 0.25 13.07 8.31 -92.71 -0.77 12.30 16 48 H 0.16 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -63.40 399.21 4.83 -58.57 By element: Atomic # 1 Polarization: 46.63 SS G_CDS: -0.16 Total: 46.47 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: 5.87 Total: -1.51 kcal Atomic # 7 Polarization: -106.30 SS G_CDS: -2.64 Total: -108.94 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -1.02 Total: -36.07 kcal Atomic # 9 Polarization: -4.80 SS G_CDS: 0.74 Total: -4.05 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -63.40 4.83 -58.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135824856.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.259 kcal (2) G-P(sol) polarization free energy of solvation -63.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds