Wall clock time and date at job start Tue Mar 31 2020 22:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35900 * 117.00099 * 2 1 4 4 C 1.38771 * 120.04036 * 180.02562 * 3 2 1 5 5 C 1.38132 * 119.99425 * 180.02562 * 4 3 2 6 6 C 1.38252 * 120.08123 * 0.02562 * 5 4 3 7 7 C 1.50695 * 119.96150 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47369 * 265.02425 * 7 6 5 9 9 O 1.21290 * 119.99730 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00534 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00276 * 180.02562 * 10 8 7 12 12 H 1.09005 * 109.46720 * 324.99608 * 11 10 8 13 13 C 1.53002 * 109.47257 * 84.99657 * 11 10 8 14 14 C 1.52998 * 109.46968 * 204.99863 * 11 10 8 15 15 C 1.53002 * 109.47249 * 65.00035 * 14 11 10 16 16 H 1.09002 * 109.46759 * 304.99820 * 15 14 11 17 17 C 1.53002 * 109.47058 * 185.00123 * 15 14 11 18 18 N 1.46498 * 109.47222 * 64.99887 * 15 14 11 19 19 C 1.36938 * 119.99897 * 205.00334 * 18 15 14 20 20 H 1.08002 * 119.99919 * 359.97438 * 19 18 15 21 21 C 1.38807 * 119.99807 * 180.02562 * 19 18 15 22 22 N 1.31623 * 119.99919 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 120.00235 * 359.97438 * 21 19 18 24 24 H 1.48507 * 109.47029 * 90.00353 * 23 21 19 25 25 H 1.48505 * 109.47285 * 209.99843 * 23 21 19 26 26 H 1.48492 * 109.47308 * 330.00322 * 23 21 19 27 27 C 1.38476 * 120.08366 * 0.02562 * 6 5 4 28 28 F 1.35104 * 119.99949 * 179.97438 * 27 6 5 29 29 C 1.38390 * 120.00516 * 0.24962 * 27 6 5 30 30 H 1.09008 * 109.46552 * 299.99593 * 1 2 3 31 31 H 1.08993 * 109.47066 * 59.99433 * 1 2 3 32 32 H 1.08997 * 109.46999 * 180.02562 * 1 2 3 33 33 H 1.07997 * 120.00689 * 0.02562 * 4 3 2 34 34 H 1.08001 * 119.96218 * 179.97438 * 5 4 3 35 35 H 1.08996 * 109.47155 * 25.02278 * 7 6 5 36 36 H 1.09005 * 109.47224 * 145.02548 * 7 6 5 37 37 H 0.96993 * 119.99504 * 359.97438 * 10 8 7 38 38 H 1.09002 * 109.46704 * 180.02562 * 13 11 10 39 39 H 1.08995 * 109.46911 * 300.00058 * 13 11 10 40 40 H 1.08995 * 109.46795 * 60.00365 * 13 11 10 41 41 H 1.09005 * 109.47187 * 184.99870 * 14 11 10 42 42 H 1.08997 * 109.47428 * 304.99532 * 14 11 10 43 43 H 1.08993 * 109.47174 * 179.97438 * 17 15 14 44 44 H 1.09002 * 109.47088 * 299.99495 * 17 15 14 45 45 H 1.09001 * 109.47178 * 59.99751 * 17 15 14 46 46 H 0.97001 * 119.99973 * 25.00528 * 18 15 14 47 47 H 0.97001 * 120.00505 * 179.97438 * 22 21 19 48 48 H 1.07994 * 120.04228 * 179.70873 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4317 1.2845 -0.0005 5 6 4.0579 2.5157 0.0000 6 6 3.3056 3.6757 0.0016 7 6 3.9915 5.0175 0.0028 8 6 4.1111 5.5193 1.4187 9 8 3.6811 4.8531 2.3365 10 7 4.6948 6.7089 1.6651 11 6 4.8115 7.1965 3.0416 12 1 3.9350 6.8883 3.6117 13 6 6.0702 6.6111 3.6851 14 6 4.9049 8.7236 3.0355 15 6 3.5954 9.3125 2.5072 16 1 3.3743 8.8867 1.5284 17 6 3.7326 10.8314 2.3833 18 7 2.5073 8.9945 3.4352 19 6 1.2156 8.9426 2.9837 20 1 0.9989 9.1365 1.9436 21 6 0.1846 8.6418 3.8631 22 7 -1.0571 8.5923 3.4293 23 14 0.5594 8.3071 5.6623 24 1 0.5046 9.5804 6.4245 25 1 -0.4447 7.3594 6.2091 26 1 1.9159 7.7155 5.7836 27 6 1.9226 3.6061 0.0032 28 9 1.1892 4.7407 0.0053 29 6 1.2917 2.3744 0.0084 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 4.0207 0.3792 -0.0014 34 1 5.1364 2.5724 0.0000 35 1 4.9858 4.9176 -0.4324 36 1 3.4068 5.7249 -0.5853 37 1 5.0383 7.2418 0.9311 38 1 6.1567 6.9735 4.7094 39 1 6.0036 5.5232 3.6894 40 1 6.9465 6.9193 3.1150 41 1 5.0807 9.0809 4.0502 42 1 5.7286 9.0347 2.3930 43 1 2.7998 11.2509 2.0065 44 1 3.9536 11.2572 3.3621 45 1 4.5421 11.0680 1.6929 46 1 2.7020 8.8207 4.3694 47 1 -1.7776 8.3818 4.0437 48 1 0.2131 2.3194 0.0145 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135824857.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:50 Heat of formation + Delta-G solvation = -89.248705 kcal Electronic energy + Delta-G solvation = -30091.297512 eV Core-core repulsion = 25868.316312 eV Total energy + Delta-G solvation = -4222.981199 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.72212 -40.27188 -39.52909 -37.63066 -36.76558 -34.50166 -32.54750 -32.01218 -30.78525 -30.66130 -29.19344 -28.14199 -26.55986 -26.30985 -23.28628 -22.80942 -22.30860 -21.00737 -20.20579 -19.77697 -18.54850 -17.63117 -17.10938 -16.87857 -16.18211 -15.98174 -15.96856 -15.26833 -15.12457 -14.89088 -14.68936 -14.49631 -14.11956 -14.03633 -13.61492 -13.48628 -13.15358 -12.92295 -12.62111 -12.47457 -12.42318 -12.31371 -12.18466 -11.95251 -11.82363 -11.70456 -11.46156 -11.28532 -11.15526 -11.01466 -10.88628 -10.63151 -10.44320 -10.23756 -9.91780 -9.53867 -9.50313 -8.93900 -8.85087 -8.70791 -8.20888 -7.18157 -5.68083 -3.02662 1.13439 1.17451 2.98743 3.04235 3.33051 3.44499 3.47736 3.52406 3.68945 4.28075 4.55660 4.63228 4.67914 4.85372 4.91020 4.97794 4.97942 5.10022 5.14635 5.25037 5.28665 5.33720 5.36366 5.46642 5.53770 5.56156 5.63462 5.79926 5.84890 5.90320 5.94983 6.00012 6.03932 6.08966 6.21284 6.27203 6.28315 6.35480 6.45647 6.58390 6.62368 6.78872 6.88524 7.01770 7.16780 7.81320 8.07066 8.50633 8.58695 9.29293 10.02287 10.21170 11.50601 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010705 B = 0.003672 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.897786 B = 7623.323757 C = 9095.786687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.314 6.314 3 C 0.154 3.846 4 C -0.165 4.165 5 C -0.041 4.041 6 C -0.135 4.135 7 C -0.098 4.098 8 C 0.516 3.484 9 O -0.527 6.527 10 N -0.718 5.718 11 C 0.143 3.857 12 H 0.099 0.901 13 C -0.161 4.161 14 C -0.134 4.134 15 C 0.177 3.823 16 H 0.054 0.946 17 C -0.165 4.165 18 N -0.745 5.745 19 C -0.236 4.236 20 H 0.088 0.912 21 C 0.006 3.994 22 N -0.935 5.935 23 Si 0.881 3.119 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.277 1.277 27 C 0.162 3.838 28 F -0.123 7.123 29 C -0.246 4.246 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.395 0.605 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.051 0.949 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.044 0.956 45 H 0.037 0.963 46 H 0.359 0.641 47 H 0.258 0.742 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.005 -12.188 -10.013 21.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.227 6.227 3 C 0.108 3.892 4 C -0.184 4.184 5 C -0.059 4.059 6 C -0.137 4.137 7 C -0.138 4.138 8 C 0.302 3.698 9 O -0.403 6.403 10 N -0.370 5.370 11 C 0.039 3.961 12 H 0.117 0.883 13 C -0.219 4.219 14 C -0.173 4.173 15 C 0.067 3.933 16 H 0.072 0.928 17 C -0.225 4.225 18 N -0.388 5.388 19 C -0.366 4.366 20 H 0.106 0.894 21 C -0.189 4.189 22 N -0.583 5.583 23 Si 0.712 3.288 24 H -0.213 1.213 25 H -0.219 1.219 26 H -0.203 1.203 27 C 0.143 3.857 28 F -0.101 7.101 29 C -0.265 4.265 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.119 0.881 33 H 0.153 0.847 34 H 0.155 0.845 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.228 0.772 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.056 0.944 46 H 0.192 0.808 47 H 0.068 0.932 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 13.511 -12.827 -9.470 20.899 hybrid contribution -0.272 0.486 1.064 1.200 sum 13.240 -12.341 -8.406 19.957 Atomic orbital electron populations 1.23122 0.78038 1.04058 1.01908 1.86067 1.21724 1.26451 1.88483 1.18691 0.92071 0.83591 0.94855 1.20353 0.91165 0.98665 1.08208 1.20616 0.99709 0.90127 0.95471 1.19226 0.91536 0.95496 1.07441 1.20522 1.02528 0.94826 0.95898 1.20340 0.77365 0.81384 0.90727 1.90732 1.46783 1.56545 1.46218 1.45916 1.61223 1.20566 1.09246 1.20979 0.99059 0.93422 0.82672 0.88335 1.22184 0.97616 1.01528 1.00588 1.22215 0.98950 0.93802 1.02323 1.20193 0.86517 0.92354 0.94205 0.92767 1.22423 1.00574 0.99361 1.00191 1.42772 1.03620 1.85356 1.07073 1.19000 0.81557 1.39935 0.96119 0.89448 1.24620 0.95163 1.01793 0.97374 1.69698 0.98455 1.55857 1.34281 0.86589 0.77381 0.77722 0.87111 1.21298 1.21891 1.20284 1.17224 0.88642 0.81936 0.97937 1.91603 1.76947 1.48526 1.93014 1.21135 1.01246 0.91178 1.12956 0.92206 0.92387 0.88070 0.84685 0.84541 0.87827 0.87705 0.77152 0.91989 0.92466 0.92948 0.90855 0.91572 0.92431 0.93666 0.94385 0.80807 0.93246 0.84168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.65 10.50 -19.43 -0.20 -3.85 16 3 C 0.15 1.97 6.69 -39.23 -0.26 1.71 16 4 C -0.17 -1.91 9.99 -39.42 -0.39 -2.30 16 5 C -0.04 -0.47 9.67 -39.62 -0.38 -0.85 16 6 C -0.14 -1.87 4.38 -104.53 -0.46 -2.33 16 7 C -0.10 -1.20 5.60 -29.04 -0.16 -1.36 16 8 C 0.52 8.33 7.79 -10.99 -0.09 8.25 16 9 O -0.53 -11.06 15.70 5.55 0.09 -10.97 16 10 N -0.72 -10.04 4.45 -53.80 -0.24 -10.28 16 11 C 0.14 2.22 2.52 -67.93 -0.17 2.05 16 12 H 0.10 2.03 7.05 -51.93 -0.37 1.66 16 13 C -0.16 -2.09 9.48 37.16 0.35 -1.73 16 14 C -0.13 -1.92 4.29 -26.73 -0.11 -2.04 16 15 C 0.18 3.24 2.84 -67.93 -0.19 3.04 16 16 H 0.05 1.04 7.56 -51.93 -0.39 0.64 16 17 C -0.17 -2.78 9.49 37.16 0.35 -2.43 16 18 N -0.75 -17.59 4.30 -53.42 -0.23 -17.82 16 19 C -0.24 -6.77 10.41 -15.06 -0.16 -6.93 16 20 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 21 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 22 N -0.93 -30.33 13.97 55.49 0.78 -29.55 16 23 Si 0.88 23.22 27.73 -169.99 -4.71 18.50 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.29 -7.89 7.11 56.52 0.40 -7.49 16 26 H -0.28 -6.94 6.52 56.52 0.37 -6.57 16 27 C 0.16 2.59 7.24 -39.44 -0.29 2.30 16 28 F -0.12 -2.31 16.56 2.25 0.04 -2.27 16 29 C -0.25 -3.46 9.02 -39.37 -0.35 -3.81 16 30 H 0.06 0.52 7.64 -51.92 -0.40 0.12 16 31 H 0.06 0.43 7.68 -51.93 -0.40 0.04 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 35 H 0.10 0.84 8.05 -51.93 -0.42 0.42 16 36 H 0.10 1.25 7.79 -51.93 -0.40 0.84 16 37 H 0.39 4.19 8.60 -40.82 -0.35 3.84 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.36 8.50 5.66 -40.82 -0.23 8.27 16 47 H 0.26 8.01 8.31 -40.82 -0.34 7.67 16 48 H 0.14 1.77 6.30 -52.49 -0.33 1.44 16 LS Contribution 400.74 15.07 6.04 6.04 Total: -1.00 -37.18 400.74 -7.40 -44.58 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -7.53 Total: 10.78 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -1.42 Total: -5.16 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: 0.31 Total: -57.64 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.12 Total: -14.82 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -4.71 Total: 18.50 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.18 -7.40 -44.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135824857.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.672 kcal (2) G-P(sol) polarization free energy of solvation -37.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds