Wall clock time and date at job start Tue Mar 31 2020 22:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35900 * 117.00099 * 2 1 4 4 C 1.38771 * 120.04036 * 180.02562 * 3 2 1 5 5 C 1.38132 * 119.99425 * 180.02562 * 4 3 2 6 6 C 1.38252 * 120.08123 * 0.02562 * 5 4 3 7 7 C 1.50695 * 119.96150 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47369 * 265.02425 * 7 6 5 9 9 O 1.21290 * 119.99730 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00534 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00276 * 180.02562 * 10 8 7 12 12 H 1.09005 * 109.46720 * 324.99608 * 11 10 8 13 13 C 1.53002 * 109.47257 * 84.99657 * 11 10 8 14 14 C 1.52998 * 109.46968 * 204.99863 * 11 10 8 15 15 C 1.53002 * 109.47249 * 65.00035 * 14 11 10 16 16 H 1.09002 * 109.46759 * 304.99820 * 15 14 11 17 17 C 1.53002 * 109.47058 * 185.00123 * 15 14 11 18 18 N 1.46498 * 109.47222 * 64.99887 * 15 14 11 19 19 C 1.36938 * 119.99897 * 205.00334 * 18 15 14 20 20 H 1.08002 * 119.99919 * 359.97438 * 19 18 15 21 21 C 1.38807 * 119.99807 * 180.02562 * 19 18 15 22 22 N 1.31623 * 119.99919 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 120.00235 * 359.97438 * 21 19 18 24 24 H 1.48507 * 109.47029 * 90.00353 * 23 21 19 25 25 H 1.48505 * 109.47285 * 209.99843 * 23 21 19 26 26 H 1.48492 * 109.47308 * 330.00322 * 23 21 19 27 27 C 1.38476 * 120.08366 * 0.02562 * 6 5 4 28 28 F 1.35104 * 119.99949 * 179.97438 * 27 6 5 29 29 C 1.38390 * 120.00516 * 0.24962 * 27 6 5 30 30 H 1.09008 * 109.46552 * 299.99593 * 1 2 3 31 31 H 1.08993 * 109.47066 * 59.99433 * 1 2 3 32 32 H 1.08997 * 109.46999 * 180.02562 * 1 2 3 33 33 H 1.07997 * 120.00689 * 0.02562 * 4 3 2 34 34 H 1.08001 * 119.96218 * 179.97438 * 5 4 3 35 35 H 1.08996 * 109.47155 * 25.02278 * 7 6 5 36 36 H 1.09005 * 109.47224 * 145.02548 * 7 6 5 37 37 H 0.96993 * 119.99504 * 359.97438 * 10 8 7 38 38 H 1.09002 * 109.46704 * 180.02562 * 13 11 10 39 39 H 1.08995 * 109.46911 * 300.00058 * 13 11 10 40 40 H 1.08995 * 109.46795 * 60.00365 * 13 11 10 41 41 H 1.09005 * 109.47187 * 184.99870 * 14 11 10 42 42 H 1.08997 * 109.47428 * 304.99532 * 14 11 10 43 43 H 1.08993 * 109.47174 * 179.97438 * 17 15 14 44 44 H 1.09002 * 109.47088 * 299.99495 * 17 15 14 45 45 H 1.09001 * 109.47178 * 59.99751 * 17 15 14 46 46 H 0.97001 * 119.99973 * 25.00528 * 18 15 14 47 47 H 0.97001 * 120.00505 * 179.97438 * 22 21 19 48 48 H 1.07994 * 120.04228 * 179.70873 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4317 1.2845 -0.0005 5 6 4.0579 2.5157 0.0000 6 6 3.3056 3.6757 0.0016 7 6 3.9915 5.0175 0.0028 8 6 4.1111 5.5193 1.4187 9 8 3.6811 4.8531 2.3365 10 7 4.6948 6.7089 1.6651 11 6 4.8115 7.1965 3.0416 12 1 3.9350 6.8883 3.6117 13 6 6.0702 6.6111 3.6851 14 6 4.9049 8.7236 3.0355 15 6 3.5954 9.3125 2.5072 16 1 3.3743 8.8867 1.5284 17 6 3.7326 10.8314 2.3833 18 7 2.5073 8.9945 3.4352 19 6 1.2156 8.9426 2.9837 20 1 0.9989 9.1365 1.9436 21 6 0.1846 8.6418 3.8631 22 7 -1.0571 8.5923 3.4293 23 14 0.5594 8.3071 5.6623 24 1 0.5046 9.5804 6.4245 25 1 -0.4447 7.3594 6.2091 26 1 1.9159 7.7155 5.7836 27 6 1.9226 3.6061 0.0032 28 9 1.1892 4.7407 0.0053 29 6 1.2917 2.3744 0.0084 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 4.0207 0.3792 -0.0014 34 1 5.1364 2.5724 0.0000 35 1 4.9858 4.9176 -0.4324 36 1 3.4068 5.7249 -0.5853 37 1 5.0383 7.2418 0.9311 38 1 6.1567 6.9735 4.7094 39 1 6.0036 5.5232 3.6894 40 1 6.9465 6.9193 3.1150 41 1 5.0807 9.0809 4.0502 42 1 5.7286 9.0347 2.3930 43 1 2.7998 11.2509 2.0065 44 1 3.9536 11.2572 3.3621 45 1 4.5421 11.0680 1.6929 46 1 2.7020 8.8207 4.3694 47 1 -1.7776 8.3818 4.0437 48 1 0.2131 2.3194 0.0145 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135824857.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:49 Heat of formation + Delta-G solvation = -115.540604 kcal Electronic energy + Delta-G solvation = -30092.437614 eV Core-core repulsion = 25868.316312 eV Total energy + Delta-G solvation = -4224.121302 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.02254 -41.26997 -40.69067 -38.72705 -38.09704 -36.07971 -34.11014 -33.51102 -31.99408 -31.76508 -30.95070 -28.97920 -27.63125 -27.38356 -25.35837 -23.79678 -23.40633 -22.21429 -21.52161 -21.21366 -19.73145 -19.53241 -18.13383 -18.11843 -17.36790 -17.06009 -16.92686 -16.75970 -16.38540 -16.13671 -16.07939 -15.77874 -15.56315 -15.25914 -14.96195 -14.72217 -14.58730 -14.33652 -14.07404 -13.96408 -13.48105 -13.35962 -13.32741 -13.16455 -13.00994 -12.81598 -12.78328 -12.62095 -12.47727 -12.38458 -12.19706 -12.00174 -11.93006 -11.87168 -11.67403 -11.44011 -10.98184 -10.82422 -9.97125 -9.92822 -9.27602 -9.20603 -8.02908 -5.32505 0.10640 0.17914 1.29724 1.35317 1.40312 1.76942 2.20178 2.28547 2.45825 2.65339 3.22992 3.30362 3.58722 3.65495 3.65849 3.82017 3.90441 4.05523 4.11518 4.16426 4.29492 4.30904 4.36812 4.48226 4.51821 4.54402 4.60157 4.68123 4.68506 4.78365 4.83924 4.92501 4.99445 5.02131 5.02167 5.08415 5.12652 5.24515 5.31043 5.34174 5.40721 5.60981 5.65143 5.68922 5.79179 6.22164 6.25045 6.70534 7.10137 7.43576 7.89356 8.04305 9.19563 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010705 B = 0.003672 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.897786 B = 7623.323757 C = 9095.786687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.320 6.320 3 C 0.146 3.854 4 C -0.161 4.161 5 C -0.035 4.035 6 C -0.146 4.146 7 C -0.091 4.091 8 C 0.508 3.492 9 O -0.585 6.585 10 N -0.706 5.706 11 C 0.141 3.859 12 H 0.041 0.959 13 C -0.149 4.149 14 C -0.120 4.120 15 C 0.166 3.834 16 H 0.042 0.958 17 C -0.157 4.157 18 N -0.749 5.749 19 C -0.212 4.212 20 H 0.053 0.947 21 C -0.068 4.068 22 N -0.987 5.987 23 Si 0.947 3.053 24 H -0.272 1.272 25 H -0.304 1.304 26 H -0.258 1.258 27 C 0.118 3.882 28 F -0.153 7.153 29 C -0.259 4.259 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.130 0.870 33 H 0.164 0.836 34 H 0.176 0.824 35 H 0.155 0.845 36 H 0.104 0.896 37 H 0.414 0.586 38 H 0.069 0.931 39 H 0.038 0.962 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.113 0.887 43 H 0.024 0.976 44 H 0.051 0.949 45 H 0.080 0.920 46 H 0.361 0.639 47 H 0.253 0.747 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.482 -12.509 -10.169 24.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.233 6.233 3 C 0.100 3.900 4 C -0.179 4.179 5 C -0.052 4.052 6 C -0.147 4.147 7 C -0.131 4.131 8 C 0.295 3.705 9 O -0.464 6.464 10 N -0.359 5.359 11 C 0.036 3.964 12 H 0.060 0.940 13 C -0.208 4.208 14 C -0.158 4.158 15 C 0.058 3.942 16 H 0.060 0.940 17 C -0.216 4.216 18 N -0.392 5.392 19 C -0.343 4.343 20 H 0.071 0.929 21 C -0.259 4.259 22 N -0.639 5.639 23 Si 0.776 3.224 24 H -0.198 1.198 25 H -0.232 1.232 26 H -0.183 1.183 27 C 0.098 3.902 28 F -0.132 7.132 29 C -0.279 4.279 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.148 0.852 33 H 0.182 0.818 34 H 0.193 0.807 35 H 0.173 0.827 36 H 0.122 0.878 37 H 0.251 0.749 38 H 0.087 0.913 39 H 0.057 0.943 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.132 0.868 43 H 0.043 0.957 44 H 0.070 0.930 45 H 0.099 0.901 46 H 0.194 0.806 47 H 0.062 0.938 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 18.077 -13.098 -9.666 24.326 hybrid contribution -1.636 0.549 0.985 1.987 sum 16.441 -12.549 -8.682 22.431 Atomic orbital electron populations 1.23372 0.76614 1.05956 1.01900 1.86061 1.23243 1.25724 1.88273 1.18916 0.92863 0.83473 0.94727 1.20809 0.90797 0.99966 1.06368 1.21075 1.01444 0.89037 0.93670 1.19540 0.90761 0.97224 1.07220 1.20601 1.05148 0.93896 0.93427 1.21046 0.76339 0.81408 0.91705 1.90705 1.49214 1.58310 1.48218 1.45841 1.60396 1.20097 1.09534 1.20877 0.98160 0.94470 0.82904 0.94044 1.22069 0.97197 1.00155 1.01343 1.22138 0.97601 0.92331 1.03774 1.20532 0.86995 0.93818 0.92817 0.93967 1.22282 1.00536 0.97293 1.01526 1.42834 1.02980 1.85373 1.08047 1.18960 0.83929 1.36977 0.94427 0.92926 1.25405 0.95045 1.03273 1.02133 1.69882 0.99631 1.58623 1.35771 0.85512 0.77543 0.77773 0.81614 1.19795 1.23176 1.18346 1.17754 0.89957 0.81588 1.00871 1.91515 1.77842 1.50129 1.93703 1.21255 1.01693 0.91399 1.13541 0.92954 0.91741 0.85198 0.81846 0.80659 0.82694 0.87817 0.74893 0.91251 0.94300 0.89598 0.89859 0.86837 0.95698 0.93033 0.90105 0.80643 0.93788 0.84115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.38 16 2 O -0.32 -7.21 10.50 -92.43 -0.97 -8.18 16 3 C 0.15 3.72 6.69 22.50 0.15 3.87 16 4 C -0.16 -3.41 9.99 22.37 0.22 -3.19 16 5 C -0.03 -0.71 9.67 22.25 0.22 -0.50 16 6 C -0.15 -3.98 4.38 -19.81 -0.09 -4.07 16 7 C -0.09 -2.11 5.60 29.10 0.16 -1.95 16 8 C 0.51 16.13 7.79 87.66 0.68 16.81 16 9 O -0.58 -25.18 15.70 -3.06 -0.05 -25.23 16 10 N -0.71 -18.44 4.45 -442.52 -1.97 -20.41 16 11 C 0.14 4.11 2.52 44.99 0.11 4.22 16 12 H 0.04 1.72 7.05 -2.38 -0.02 1.70 16 13 C -0.15 -3.42 9.48 71.98 0.68 -2.73 16 14 C -0.12 -3.00 4.29 30.59 0.13 -2.87 16 15 C 0.17 5.80 2.84 44.99 0.13 5.93 16 16 H 0.04 1.58 7.56 -2.39 -0.02 1.56 16 17 C -0.16 -4.88 9.49 71.98 0.68 -4.19 16 18 N -0.75 -35.36 4.30 -322.94 -1.39 -36.75 16 19 C -0.21 -12.56 10.41 84.03 0.87 -11.69 16 20 H 0.05 3.44 8.06 -2.91 -0.02 3.41 16 21 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 22 N -0.99 -67.20 13.97 21.65 0.30 -66.90 16 23 Si 0.95 49.33 27.73 68.60 1.90 51.23 16 24 H -0.27 -13.43 7.11 99.48 0.71 -12.73 16 25 H -0.30 -16.35 7.11 99.48 0.71 -15.65 16 26 H -0.26 -12.49 6.52 99.48 0.65 -11.85 16 27 C 0.12 3.97 7.24 22.36 0.16 4.13 16 28 F -0.15 -6.29 16.56 44.97 0.74 -5.55 16 29 C -0.26 -7.72 9.02 22.41 0.20 -7.51 16 30 H 0.05 0.94 7.64 -2.38 -0.02 0.92 16 31 H 0.06 0.98 7.68 -2.39 -0.02 0.96 16 32 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.16 2.49 8.06 -2.91 -0.02 2.46 16 34 H 0.18 2.17 8.06 -2.91 -0.02 2.15 16 35 H 0.16 1.87 8.05 -2.39 -0.02 1.86 16 36 H 0.10 2.43 7.79 -2.38 -0.02 2.41 16 37 H 0.41 7.44 8.60 -92.71 -0.80 6.64 16 38 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.04 1.03 8.14 -2.39 -0.02 1.02 16 40 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 42 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.36 16.79 5.66 -92.71 -0.52 16.26 16 47 H 0.25 16.55 8.31 -92.71 -0.77 15.78 16 48 H 0.14 3.91 6.30 -2.91 -0.02 3.89 16 Total: -1.00 -88.99 400.74 4.08 -84.92 By element: Atomic # 1 Polarization: 33.43 SS G_CDS: -0.40 Total: 33.02 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 5.90 Total: -6.15 kcal Atomic # 7 Polarization: -121.01 SS G_CDS: -3.05 Total: -124.06 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -1.02 Total: -33.42 kcal Atomic # 9 Polarization: -6.29 SS G_CDS: 0.74 Total: -5.55 kcal Atomic # 14 Polarization: 49.33 SS G_CDS: 1.90 Total: 51.23 kcal Total: -88.99 4.08 -84.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135824857.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.624 kcal (2) G-P(sol) polarization free energy of solvation -88.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds