Wall clock time and date at job start Tue Mar 31 2020 22:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35901 * 116.99636 * 2 1 4 4 C 1.38769 * 120.04243 * 0.25015 * 3 2 1 5 5 C 1.38135 * 119.99269 * 180.21641 * 4 3 2 6 6 C 1.38258 * 120.07909 * 359.51002 * 5 4 3 7 7 C 1.50704 * 119.95556 * 180.25723 * 6 5 4 8 8 C 1.50697 * 109.47019 * 100.00483 * 7 6 5 9 9 O 1.21284 * 120.00268 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99932 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99710 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.47442 * 35.00481 * 11 10 8 13 13 C 1.52999 * 109.47517 * 274.99670 * 11 10 8 14 14 C 1.53002 * 109.46718 * 155.00082 * 11 10 8 15 15 C 1.52993 * 109.47148 * 294.99867 * 14 11 10 16 16 H 1.09002 * 109.47481 * 55.00531 * 15 14 11 17 17 C 1.53003 * 109.47128 * 175.00041 * 15 14 11 18 18 N 1.46496 * 109.47569 * 295.00178 * 15 14 11 19 19 C 1.36938 * 120.00297 * 155.00086 * 18 15 14 20 20 H 1.07994 * 119.99966 * 359.97438 * 19 18 15 21 21 C 1.38808 * 119.99973 * 180.02562 * 19 18 15 22 22 N 1.31619 * 119.99989 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 120.00287 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.46885 * 90.00103 * 23 21 19 25 25 H 1.48497 * 109.47585 * 210.00313 * 23 21 19 26 26 H 1.48498 * 109.46842 * 330.00433 * 23 21 19 27 27 C 1.38471 * 120.08380 * 0.28253 * 6 5 4 28 28 F 1.35100 * 119.99730 * 179.97438 * 27 6 5 29 29 C 1.38382 * 120.00829 * 359.95117 * 27 6 5 30 30 H 1.09007 * 109.46960 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47466 * 299.99868 * 1 2 3 32 32 H 1.09000 * 109.47349 * 60.00214 * 1 2 3 33 33 H 1.08000 * 120.00686 * 0.02562 * 4 3 2 34 34 H 1.08002 * 119.96261 * 179.79560 * 5 4 3 35 35 H 1.09000 * 109.46863 * 219.99929 * 7 6 5 36 36 H 1.09001 * 109.46924 * 340.00177 * 7 6 5 37 37 H 0.96992 * 119.99958 * 0.02562 * 10 8 7 38 38 H 1.09001 * 109.46814 * 60.00263 * 13 11 10 39 39 H 1.09001 * 109.47272 * 180.02562 * 13 11 10 40 40 H 1.08999 * 109.47426 * 300.00821 * 13 11 10 41 41 H 1.09000 * 109.47200 * 55.00363 * 14 11 10 42 42 H 1.09000 * 109.47213 * 174.99881 * 14 11 10 43 43 H 1.08999 * 109.47098 * 180.02562 * 17 15 14 44 44 H 1.09003 * 109.46975 * 300.00300 * 17 15 14 45 45 H 1.08997 * 109.47236 * 59.99945 * 17 15 14 46 46 H 0.97004 * 119.99536 * 335.00139 * 18 15 14 47 47 H 0.97000 * 120.00131 * 179.97438 * 22 21 19 48 48 H 1.08000 * 120.04424 * 179.97438 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2909 2.3752 0.0052 5 6 1.9190 3.6055 0.0007 6 6 3.2996 3.6787 0.0012 7 6 3.9820 5.0224 0.0021 8 6 4.4290 5.3578 1.4016 9 8 4.2143 4.5823 2.3091 10 7 5.0675 6.5196 1.6449 11 6 5.5016 6.8458 3.0055 12 1 5.8104 5.9341 3.5169 13 6 4.3438 7.4918 3.7692 14 6 6.6794 7.8204 2.9451 15 6 7.8789 7.1310 2.2919 16 1 7.5872 6.7409 1.3168 17 6 9.0152 8.1408 2.1180 18 7 8.3317 6.0282 3.1434 19 6 9.0096 4.9728 2.5941 20 1 9.2100 4.9531 1.5331 21 6 9.4381 3.9277 3.4009 22 7 10.0901 2.9135 2.8730 23 14 9.0908 3.9613 5.2361 24 1 7.7861 3.3051 5.5049 25 1 10.1675 3.2361 5.9571 26 1 9.0426 5.3695 5.7049 27 6 4.0562 2.5190 0.0003 28 9 5.4052 2.5925 0.0003 29 6 3.4307 1.2846 0.0000 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 0.2123 2.3196 0.0097 34 1 1.3309 4.5114 0.0015 35 1 4.8486 4.9903 -0.6582 36 1 3.2855 5.7838 -0.3492 37 1 5.2389 7.1399 0.9193 38 1 3.5047 6.7974 3.8122 39 1 4.6670 7.7349 4.7814 40 1 4.0351 8.4035 3.2579 41 1 6.3982 8.6943 2.3573 42 1 6.9453 8.1322 3.9551 43 1 9.8696 7.6497 1.6522 44 1 8.6783 8.9613 1.4844 45 1 9.3069 8.5309 3.0930 46 1 8.1513 6.0458 4.0963 47 1 10.3899 2.1833 3.4369 48 1 4.0202 0.3797 -0.0012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135824858.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:54 Heat of formation + Delta-G solvation = -87.954412 kcal Electronic energy + Delta-G solvation = -30053.318844 eV Core-core repulsion = 25830.393770 eV Total energy + Delta-G solvation = -4222.925075 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.67098 -40.29766 -39.53037 -37.61226 -36.75767 -34.49412 -32.58725 -32.01236 -30.92679 -30.50815 -29.17392 -28.08090 -26.62215 -26.32661 -23.27446 -22.97504 -22.17514 -20.98078 -20.19671 -19.77072 -18.54712 -17.61421 -17.08788 -16.84960 -16.19093 -15.99808 -15.94962 -15.33632 -15.15246 -14.97337 -14.61394 -14.56078 -14.11209 -13.82284 -13.59950 -13.42773 -13.14392 -12.85847 -12.61929 -12.59396 -12.48094 -12.36458 -12.17213 -11.94767 -11.89061 -11.72075 -11.58645 -11.16779 -11.07564 -11.05231 -10.84809 -10.60980 -10.44891 -10.23757 -9.90639 -9.53560 -9.47977 -8.87390 -8.82767 -8.70496 -8.24723 -7.16048 -5.65660 -3.00363 1.13047 1.18120 2.96430 2.99079 3.33073 3.45603 3.50114 3.55242 3.68690 4.40097 4.56028 4.62422 4.70223 4.75148 4.87624 4.90182 4.98066 5.11503 5.16053 5.18145 5.26161 5.29182 5.36874 5.45600 5.54115 5.56682 5.64760 5.80594 5.84615 5.89587 5.90825 5.94734 6.04454 6.14467 6.22148 6.26567 6.27725 6.36178 6.46375 6.58677 6.65550 6.79618 6.88913 7.02943 7.16693 7.81449 8.09229 8.52997 8.58970 9.31450 10.04453 10.23214 11.52998 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011443 B = 0.003502 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.335408 B = 7992.667743 C = 9277.947301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.154 3.846 4 C -0.223 4.223 5 C -0.042 4.042 6 C -0.136 4.136 7 C -0.097 4.097 8 C 0.516 3.484 9 O -0.527 6.527 10 N -0.718 5.718 11 C 0.143 3.857 12 H 0.098 0.902 13 C -0.161 4.161 14 C -0.134 4.134 15 C 0.177 3.823 16 H 0.055 0.945 17 C -0.166 4.166 18 N -0.745 5.745 19 C -0.237 4.237 20 H 0.088 0.912 21 C 0.007 3.993 22 N -0.934 5.934 23 Si 0.879 3.121 24 H -0.283 1.283 25 H -0.293 1.293 26 H -0.278 1.278 27 C 0.166 3.834 28 F -0.118 7.118 29 C -0.190 4.190 30 H 0.100 0.900 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.395 0.605 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.037 0.963 45 H 0.044 0.956 46 H 0.359 0.641 47 H 0.258 0.742 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.589 5.963 -8.333 23.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.227 6.227 3 C 0.108 3.892 4 C -0.241 4.241 5 C -0.060 4.060 6 C -0.137 4.137 7 C -0.137 4.137 8 C 0.302 3.698 9 O -0.402 6.402 10 N -0.369 5.369 11 C 0.039 3.961 12 H 0.116 0.884 13 C -0.219 4.219 14 C -0.173 4.173 15 C 0.067 3.933 16 H 0.073 0.927 17 C -0.226 4.226 18 N -0.388 5.388 19 C -0.367 4.367 20 H 0.106 0.894 21 C -0.189 4.189 22 N -0.582 5.582 23 Si 0.710 3.290 24 H -0.210 1.210 25 H -0.219 1.219 26 H -0.204 1.204 27 C 0.146 3.854 28 F -0.096 7.096 29 C -0.209 4.209 30 H 0.118 0.882 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.229 0.771 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.056 0.944 45 H 0.063 0.937 46 H 0.192 0.808 47 H 0.068 0.932 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -21.492 5.027 -7.814 23.415 hybrid contribution 0.046 0.335 1.069 1.121 sum -21.446 5.362 -6.745 23.112 Atomic orbital electron populations 1.23082 0.78186 1.04017 1.01475 1.86078 1.21508 1.26671 1.88482 1.18573 0.91343 0.84328 0.94944 1.21143 1.00115 0.91999 1.10888 1.20580 0.92552 0.97435 0.95453 1.19229 0.93801 0.93230 1.07483 1.20524 1.02123 0.94889 0.96200 1.20333 0.77890 0.81208 0.90395 1.90733 1.54940 1.48257 1.46302 1.45909 1.59541 1.20721 1.10778 1.20973 0.92796 0.99808 0.82534 0.88360 1.22187 0.99166 1.00376 1.00204 1.22215 0.95372 0.97522 1.02188 1.20189 0.90562 0.87942 0.94578 0.92722 1.22428 1.01064 0.98676 1.00391 1.42768 1.68700 1.21568 1.05762 1.18989 1.27225 0.95741 0.94721 0.89446 1.24619 1.00389 0.96691 0.97191 1.69695 1.43647 1.10386 1.34478 0.86622 0.77765 0.77159 0.87450 1.20982 1.21917 1.20429 1.17122 0.77514 0.92963 0.97816 1.91628 1.28057 1.96994 1.92925 1.20244 0.92526 0.97809 1.10342 0.88172 0.92467 0.92527 0.85019 0.84975 0.87629 0.87916 0.77149 0.92482 0.91967 0.92964 0.91582 0.90853 0.92434 0.94417 0.93696 0.80830 0.93228 0.83821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.66 10.50 -19.43 -0.20 -3.87 16 3 C 0.15 1.98 6.69 -39.22 -0.26 1.72 16 4 C -0.22 -2.42 9.04 -39.42 -0.36 -2.77 16 5 C -0.04 -0.47 9.66 -39.61 -0.38 -0.85 16 6 C -0.14 -1.88 4.43 -104.53 -0.46 -2.34 16 7 C -0.10 -1.19 5.55 -29.03 -0.16 -1.35 16 8 C 0.52 8.33 7.78 -10.99 -0.09 8.25 16 9 O -0.53 -11.07 15.61 5.55 0.09 -10.98 16 10 N -0.72 -10.01 4.45 -53.81 -0.24 -10.25 16 11 C 0.14 2.21 2.52 -67.93 -0.17 2.04 16 12 H 0.10 2.00 7.05 -51.93 -0.37 1.64 16 13 C -0.16 -2.07 9.48 37.16 0.35 -1.72 16 14 C -0.13 -1.92 4.29 -26.73 -0.11 -2.04 16 15 C 0.18 3.25 2.84 -67.93 -0.19 3.06 16 16 H 0.05 1.05 7.56 -51.93 -0.39 0.65 16 17 C -0.17 -2.81 9.49 37.16 0.35 -2.45 16 18 N -0.74 -17.65 4.30 -53.43 -0.23 -17.88 16 19 C -0.24 -6.82 10.41 -15.06 -0.16 -6.98 16 20 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 21 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 22 N -0.93 -30.47 13.97 55.49 0.78 -29.69 16 23 Si 0.88 23.30 27.74 -169.99 -4.71 18.58 16 24 H -0.28 -7.67 7.11 56.52 0.40 -7.27 16 25 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 26 H -0.28 -6.85 6.52 56.52 0.37 -6.48 16 27 C 0.17 2.70 7.12 -39.44 -0.28 2.42 16 28 F -0.12 -2.29 16.66 2.25 0.04 -2.25 16 29 C -0.19 -2.83 9.97 -39.37 -0.39 -3.22 16 30 H 0.10 0.49 8.14 -51.92 -0.42 0.07 16 31 H 0.06 0.36 7.65 -51.93 -0.40 -0.04 16 32 H 0.06 0.31 7.67 -51.93 -0.40 -0.09 16 33 H 0.13 1.03 6.30 -52.49 -0.33 0.69 16 34 H 0.13 1.08 8.03 -52.49 -0.42 0.65 16 35 H 0.11 1.24 7.94 -51.93 -0.41 0.83 16 36 H 0.10 0.83 8.00 -51.93 -0.42 0.41 16 37 H 0.39 4.18 8.60 -40.82 -0.35 3.83 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.36 8.53 5.66 -40.82 -0.23 8.30 16 47 H 0.26 8.06 8.31 -40.82 -0.34 7.72 16 48 H 0.14 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 400.70 15.07 6.04 6.04 Total: -1.00 -37.55 400.70 -7.40 -44.96 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -7.54 Total: 10.31 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -1.42 Total: -4.96 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: 0.31 Total: -57.82 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.12 Total: -14.85 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.04 Total: -2.25 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -4.71 Total: 18.58 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.55 -7.40 -44.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135824858.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.996 kcal (2) G-P(sol) polarization free energy of solvation -37.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds