Wall clock time and date at job start Tue Mar 31 2020 22:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35901 * 116.99636 * 2 1 4 4 C 1.38769 * 120.04243 * 0.25015 * 3 2 1 5 5 C 1.38135 * 119.99269 * 180.21641 * 4 3 2 6 6 C 1.38258 * 120.07909 * 359.51002 * 5 4 3 7 7 C 1.50704 * 119.95556 * 180.25723 * 6 5 4 8 8 C 1.50697 * 109.47019 * 100.00483 * 7 6 5 9 9 O 1.21284 * 120.00268 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99932 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99710 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.47442 * 35.00481 * 11 10 8 13 13 C 1.52999 * 109.47517 * 274.99670 * 11 10 8 14 14 C 1.53002 * 109.46718 * 155.00082 * 11 10 8 15 15 C 1.52993 * 109.47148 * 294.99867 * 14 11 10 16 16 H 1.09002 * 109.47481 * 55.00531 * 15 14 11 17 17 C 1.53003 * 109.47128 * 175.00041 * 15 14 11 18 18 N 1.46496 * 109.47569 * 295.00178 * 15 14 11 19 19 C 1.36938 * 120.00297 * 155.00086 * 18 15 14 20 20 H 1.07994 * 119.99966 * 359.97438 * 19 18 15 21 21 C 1.38808 * 119.99973 * 180.02562 * 19 18 15 22 22 N 1.31619 * 119.99989 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 120.00287 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.46885 * 90.00103 * 23 21 19 25 25 H 1.48497 * 109.47585 * 210.00313 * 23 21 19 26 26 H 1.48498 * 109.46842 * 330.00433 * 23 21 19 27 27 C 1.38471 * 120.08380 * 0.28253 * 6 5 4 28 28 F 1.35100 * 119.99730 * 179.97438 * 27 6 5 29 29 C 1.38382 * 120.00829 * 359.95117 * 27 6 5 30 30 H 1.09007 * 109.46960 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47466 * 299.99868 * 1 2 3 32 32 H 1.09000 * 109.47349 * 60.00214 * 1 2 3 33 33 H 1.08000 * 120.00686 * 0.02562 * 4 3 2 34 34 H 1.08002 * 119.96261 * 179.79560 * 5 4 3 35 35 H 1.09000 * 109.46863 * 219.99929 * 7 6 5 36 36 H 1.09001 * 109.46924 * 340.00177 * 7 6 5 37 37 H 0.96992 * 119.99958 * 0.02562 * 10 8 7 38 38 H 1.09001 * 109.46814 * 60.00263 * 13 11 10 39 39 H 1.09001 * 109.47272 * 180.02562 * 13 11 10 40 40 H 1.08999 * 109.47426 * 300.00821 * 13 11 10 41 41 H 1.09000 * 109.47200 * 55.00363 * 14 11 10 42 42 H 1.09000 * 109.47213 * 174.99881 * 14 11 10 43 43 H 1.08999 * 109.47098 * 180.02562 * 17 15 14 44 44 H 1.09003 * 109.46975 * 300.00300 * 17 15 14 45 45 H 1.08997 * 109.47236 * 59.99945 * 17 15 14 46 46 H 0.97004 * 119.99536 * 335.00139 * 18 15 14 47 47 H 0.97000 * 120.00131 * 179.97438 * 22 21 19 48 48 H 1.08000 * 120.04424 * 179.97438 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2909 2.3752 0.0052 5 6 1.9190 3.6055 0.0007 6 6 3.2996 3.6787 0.0012 7 6 3.9820 5.0224 0.0021 8 6 4.4290 5.3578 1.4016 9 8 4.2143 4.5823 2.3091 10 7 5.0675 6.5196 1.6449 11 6 5.5016 6.8458 3.0055 12 1 5.8104 5.9341 3.5169 13 6 4.3438 7.4918 3.7692 14 6 6.6794 7.8204 2.9451 15 6 7.8789 7.1310 2.2919 16 1 7.5872 6.7409 1.3168 17 6 9.0152 8.1408 2.1180 18 7 8.3317 6.0282 3.1434 19 6 9.0096 4.9728 2.5941 20 1 9.2100 4.9531 1.5331 21 6 9.4381 3.9277 3.4009 22 7 10.0901 2.9135 2.8730 23 14 9.0908 3.9613 5.2361 24 1 7.7861 3.3051 5.5049 25 1 10.1675 3.2361 5.9571 26 1 9.0426 5.3695 5.7049 27 6 4.0562 2.5190 0.0003 28 9 5.4052 2.5925 0.0003 29 6 3.4307 1.2846 0.0000 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 0.2123 2.3196 0.0097 34 1 1.3309 4.5114 0.0015 35 1 4.8486 4.9903 -0.6582 36 1 3.2855 5.7838 -0.3492 37 1 5.2389 7.1399 0.9193 38 1 3.5047 6.7974 3.8122 39 1 4.6670 7.7349 4.7814 40 1 4.0351 8.4035 3.2579 41 1 6.3982 8.6943 2.3573 42 1 6.9453 8.1322 3.9551 43 1 9.8696 7.6497 1.6522 44 1 8.6783 8.9613 1.4844 45 1 9.3069 8.5309 3.0930 46 1 8.1513 6.0458 4.0963 47 1 10.3899 2.1833 3.4369 48 1 4.0202 0.3797 -0.0012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135824858.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:53 Heat of formation + Delta-G solvation = -115.010852 kcal Electronic energy + Delta-G solvation = -30054.492100 eV Core-core repulsion = 25830.393770 eV Total energy + Delta-G solvation = -4224.098330 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.00923 -41.27355 -40.68503 -38.70545 -38.08062 -36.07595 -34.10575 -33.55328 -32.10811 -31.63630 -30.93119 -28.85619 -27.62525 -27.38579 -25.35298 -23.99292 -23.27072 -22.17811 -21.50508 -21.21068 -19.72452 -19.49031 -18.16506 -18.03506 -17.36290 -17.04335 -16.87717 -16.74458 -16.37812 -16.28636 -16.08384 -15.74397 -15.61202 -15.24724 -14.83891 -14.64337 -14.52108 -14.34772 -14.03806 -13.92536 -13.48840 -13.41259 -13.30636 -13.23246 -13.03746 -12.86137 -12.75974 -12.61844 -12.61341 -12.29409 -12.01531 -11.94579 -11.90368 -11.87761 -11.67826 -11.42426 -10.98553 -10.81658 -9.94357 -9.91294 -9.26982 -9.21967 -8.02097 -5.31742 0.09531 0.19830 1.28815 1.36637 1.40386 1.77676 2.15539 2.28568 2.46517 2.65441 3.31459 3.39360 3.61902 3.66058 3.67900 3.82556 3.92107 4.06388 4.16259 4.19769 4.27792 4.37159 4.41362 4.41784 4.51680 4.55133 4.60010 4.68717 4.74777 4.78716 4.84304 4.92645 4.97292 4.98598 5.02712 5.08674 5.17930 5.24708 5.29491 5.34599 5.41144 5.61300 5.66704 5.69525 5.79937 6.22953 6.32404 6.71178 7.10870 7.44415 7.89998 8.04774 9.20357 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011443 B = 0.003502 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.335408 B = 7992.667743 C = 9277.947301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.335 6.335 3 C 0.150 3.850 4 C -0.210 4.210 5 C -0.034 4.034 6 C -0.147 4.147 7 C -0.091 4.091 8 C 0.507 3.493 9 O -0.585 6.585 10 N -0.706 5.706 11 C 0.140 3.860 12 H 0.041 0.959 13 C -0.149 4.149 14 C -0.120 4.120 15 C 0.165 3.835 16 H 0.043 0.957 17 C -0.157 4.157 18 N -0.749 5.749 19 C -0.211 4.211 20 H 0.053 0.947 21 C -0.069 4.069 22 N -0.987 5.987 23 Si 0.946 3.054 24 H -0.296 1.296 25 H -0.295 1.295 26 H -0.243 1.243 27 C 0.122 3.878 28 F -0.152 7.152 29 C -0.217 4.217 30 H 0.119 0.881 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.172 0.828 34 H 0.176 0.824 35 H 0.104 0.896 36 H 0.156 0.844 37 H 0.414 0.586 38 H 0.037 0.963 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.114 0.886 42 H 0.083 0.917 43 H 0.024 0.976 44 H 0.080 0.920 45 H 0.050 0.950 46 H 0.361 0.639 47 H 0.253 0.747 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.192 9.957 -8.223 28.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.249 6.249 3 C 0.104 3.896 4 C -0.228 4.228 5 C -0.052 4.052 6 C -0.149 4.149 7 C -0.130 4.130 8 C 0.294 3.706 9 O -0.465 6.465 10 N -0.359 5.359 11 C 0.036 3.964 12 H 0.060 0.940 13 C -0.208 4.208 14 C -0.158 4.158 15 C 0.058 3.942 16 H 0.061 0.939 17 C -0.216 4.216 18 N -0.392 5.392 19 C -0.342 4.342 20 H 0.071 0.929 21 C -0.259 4.259 22 N -0.639 5.639 23 Si 0.775 3.225 24 H -0.223 1.223 25 H -0.222 1.222 26 H -0.167 1.167 27 C 0.102 3.898 28 F -0.131 7.131 29 C -0.237 4.237 30 H 0.137 0.863 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.189 0.811 34 H 0.193 0.807 35 H 0.123 0.877 36 H 0.174 0.826 37 H 0.251 0.749 38 H 0.057 0.943 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.132 0.868 42 H 0.101 0.899 43 H 0.043 0.957 44 H 0.099 0.901 45 H 0.069 0.931 46 H 0.193 0.807 47 H 0.062 0.938 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -25.113 9.130 -7.738 27.819 hybrid contribution 1.046 -0.914 0.904 1.658 sum -24.066 8.215 -6.835 26.332 Atomic orbital electron populations 1.23464 0.75546 1.05925 1.02922 1.86061 1.24250 1.26322 1.88227 1.18672 0.90655 0.85763 0.94538 1.21609 1.01924 0.90911 1.08382 1.21100 0.91504 0.99261 0.93305 1.19542 0.95047 0.92861 1.07414 1.20610 1.03269 0.95597 0.93554 1.21061 0.77265 0.80881 0.91355 1.90707 1.57399 1.50020 1.48375 1.45834 1.58368 1.20593 1.11069 1.20880 0.94564 0.97928 0.83073 0.94030 1.22070 0.97132 1.00906 1.00647 1.22134 0.92462 0.98027 1.03180 1.20535 0.92926 0.87063 0.93680 0.93907 1.22283 0.98989 0.99023 1.01331 1.42826 1.68182 1.21778 1.06414 1.18949 1.25372 0.96711 0.93182 0.92925 1.25413 1.01588 0.96805 1.02126 1.69880 1.46303 1.11585 1.36130 0.85529 0.76442 0.78765 0.81807 1.22341 1.22171 1.16742 1.17638 0.76465 0.94839 1.00811 1.91527 1.30649 1.97230 1.93674 1.20317 0.94111 0.97131 1.12116 0.86308 0.91387 0.90498 0.81077 0.80696 0.87740 0.82613 0.74878 0.94337 0.91180 0.89605 0.86822 0.89857 0.95713 0.90092 0.93115 0.80666 0.93797 0.85213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.29 16 2 O -0.33 -7.67 10.50 -92.44 -0.97 -8.64 16 3 C 0.15 3.85 6.69 22.50 0.15 4.01 16 4 C -0.21 -4.02 9.04 22.37 0.20 -3.81 16 5 C -0.03 -0.67 9.66 22.25 0.21 -0.45 16 6 C -0.15 -4.03 4.43 -19.80 -0.09 -4.11 16 7 C -0.09 -2.10 5.55 29.10 0.16 -1.94 16 8 C 0.51 16.20 7.78 87.66 0.68 16.88 16 9 O -0.59 -25.45 15.61 -3.04 -0.05 -25.50 16 10 N -0.71 -18.46 4.45 -442.54 -1.97 -20.42 16 11 C 0.14 4.09 2.52 44.99 0.11 4.20 16 12 H 0.04 1.71 7.05 -2.39 -0.02 1.70 16 13 C -0.15 -3.39 9.48 71.98 0.68 -2.71 16 14 C -0.12 -2.99 4.29 30.59 0.13 -2.86 16 15 C 0.17 5.81 2.84 44.99 0.13 5.94 16 16 H 0.04 1.61 7.56 -2.39 -0.02 1.59 16 17 C -0.16 -4.90 9.49 71.98 0.68 -4.22 16 18 N -0.75 -35.53 4.30 -322.96 -1.39 -36.92 16 19 C -0.21 -12.60 10.41 84.03 0.87 -11.73 16 20 H 0.05 3.46 8.06 -2.91 -0.02 3.44 16 21 C -0.07 -4.34 5.50 84.86 0.47 -3.87 16 22 N -0.99 -67.89 13.97 21.65 0.30 -67.59 16 23 Si 0.95 49.78 27.74 68.60 1.90 51.68 16 24 H -0.30 -16.08 7.11 99.48 0.71 -15.37 16 25 H -0.29 -15.52 7.11 99.48 0.71 -14.81 16 26 H -0.24 -11.24 6.52 99.48 0.65 -10.59 16 27 C 0.12 4.29 7.12 22.36 0.16 4.45 16 28 F -0.15 -6.60 16.66 44.97 0.75 -5.85 16 29 C -0.22 -7.06 9.97 22.41 0.22 -6.84 16 30 H 0.12 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.07 0.64 7.65 -2.39 -0.02 0.63 16 32 H 0.08 0.58 7.67 -2.39 -0.02 0.56 16 33 H 0.17 1.86 6.30 -2.91 -0.02 1.84 16 34 H 0.18 1.89 8.03 -2.91 -0.02 1.87 16 35 H 0.10 2.44 7.94 -2.39 -0.02 2.42 16 36 H 0.16 1.82 8.00 -2.39 -0.02 1.81 16 37 H 0.41 7.42 8.60 -92.71 -0.80 6.62 16 38 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.36 16.85 5.66 -92.71 -0.52 16.32 16 47 H 0.25 16.73 8.31 -92.71 -0.77 15.96 16 48 H 0.13 4.30 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -92.12 400.70 4.08 -88.04 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: -0.40 Total: 30.98 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: 5.90 Total: -5.78 kcal Atomic # 7 Polarization: -121.88 SS G_CDS: -3.05 Total: -124.93 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -1.02 Total: -34.14 kcal Atomic # 9 Polarization: -6.60 SS G_CDS: 0.75 Total: -5.85 kcal Atomic # 14 Polarization: 49.78 SS G_CDS: 1.90 Total: 51.68 kcal Total: -92.12 4.08 -88.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135824858.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.970 kcal (2) G-P(sol) polarization free energy of solvation -92.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds