Wall clock time and date at job start Tue Mar 31 2020 22:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 113.99978 * 2 1 4 4 C 1.50700 * 109.46911 * 180.02562 * 3 2 1 5 5 C 1.38347 * 119.86923 * 0.02562 * 4 3 2 6 6 C 1.37940 * 120.17794 * 179.74375 * 5 4 3 7 7 C 1.39599 * 119.90165 * 0.51563 * 6 5 4 8 8 C 1.47857 * 120.13276 * 179.73779 * 7 6 5 9 9 O 1.21552 * 119.99726 * 184.87148 * 8 7 6 10 10 N 1.34773 * 119.99800 * 5.14808 * 8 7 6 11 11 C 1.46499 * 119.99918 * 174.55200 * 10 8 7 12 12 H 1.09000 * 109.47100 * 37.90135 * 11 10 8 13 13 C 1.52997 * 109.47286 * 277.89786 * 11 10 8 14 14 C 1.53006 * 109.46848 * 157.90006 * 11 10 8 15 15 C 1.52994 * 109.47026 * 296.78213 * 14 11 10 16 16 H 1.08994 * 109.47220 * 53.93798 * 15 14 11 17 17 C 1.53009 * 109.47356 * 293.93593 * 15 14 11 18 18 N 1.46500 * 109.46977 * 173.93680 * 15 14 11 19 19 C 1.36932 * 120.00048 * 207.85575 * 18 15 14 20 20 H 1.08004 * 120.00217 * 4.97778 * 19 18 15 21 21 C 1.38811 * 120.00202 * 184.97295 * 19 18 15 22 22 N 1.31620 * 120.00208 * 184.57847 * 21 19 18 23 23 Si 1.86808 * 119.99890 * 4.58508 * 21 19 18 24 24 H 1.48493 * 109.46929 * 93.96532 * 23 21 19 25 25 H 1.48497 * 109.46747 * 213.96664 * 23 21 19 26 26 H 1.48493 * 109.46761 * 333.96573 * 23 21 19 27 27 C 1.39533 * 119.73778 * 359.47054 * 7 6 5 28 28 C 1.38212 * 119.82288 * 0.27119 * 27 7 6 29 29 F 1.35098 * 119.95520 * 180.02562 * 28 27 7 30 30 H 1.09003 * 109.47280 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46994 * 300.00330 * 1 2 3 32 32 H 1.08991 * 109.47146 * 59.99878 * 1 2 3 33 33 H 1.08993 * 109.47610 * 60.00090 * 3 2 1 34 34 H 1.08999 * 109.47447 * 299.99845 * 3 2 1 35 35 H 1.08000 * 119.91020 * 0.02562 * 5 4 3 36 36 H 1.07992 * 120.05269 * 180.25297 * 6 5 4 37 37 H 0.97003 * 119.99722 * 354.55358 * 10 8 7 38 38 H 1.09000 * 109.47336 * 300.00204 * 13 11 10 39 39 H 1.09004 * 109.46857 * 60.00163 * 13 11 10 40 40 H 1.09002 * 109.47383 * 179.97438 * 13 11 10 41 41 H 1.08995 * 109.47138 * 56.78764 * 14 11 10 42 42 H 1.08999 * 109.46667 * 176.78409 * 14 11 10 43 43 H 1.08999 * 109.47034 * 60.00096 * 17 15 14 44 44 H 1.08996 * 109.46720 * 179.97438 * 17 15 14 45 45 H 1.09001 * 109.46491 * 300.00398 * 17 15 14 46 46 H 0.96997 * 119.99961 * 27.85801 * 18 15 14 47 47 H 0.96998 * 119.99960 * 179.97438 * 22 21 19 48 48 H 1.07998 * 120.08882 * 180.25433 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.1046 -0.0640 -0.0016 6 6 5.4791 -0.1804 -0.0076 7 6 6.2746 0.9667 -0.0017 8 6 7.7484 0.8479 -0.0021 9 8 8.4384 1.8441 0.0924 10 7 8.3266 -0.3644 -0.1129 11 6 9.7826 -0.4733 -0.2336 12 1 10.2568 0.2734 0.4034 13 6 10.1929 -0.2372 -1.6885 14 6 10.2272 -1.8712 0.2014 15 6 9.8887 -2.0773 1.6791 16 1 8.8307 -1.8716 1.8415 17 6 10.7301 -1.1262 2.5326 18 7 10.1808 -3.4619 2.0584 19 6 9.4814 -4.0553 3.0751 20 1 8.6610 -3.5319 3.5436 21 6 9.8267 -5.3296 3.5037 22 7 9.0996 -5.9362 4.4179 23 14 11.3237 -6.1837 2.7830 24 1 12.5021 -5.9333 3.6512 25 1 11.0693 -7.6446 2.7029 26 1 11.5895 -5.6522 1.4222 27 6 5.6735 2.2259 -0.0010 28 6 4.2953 2.3296 -0.0005 29 9 3.7104 3.5475 -0.0004 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.6887 1.8464 0.8899 34 1 1.6887 1.8464 -0.8900 35 1 3.4890 -0.9514 -0.0024 36 1 5.9391 -1.1574 -0.0125 37 1 7.7787 -1.1649 -0.1128 38 1 9.7187 -0.9839 -2.3254 39 1 9.8761 0.7587 -1.9983 40 1 11.2762 -0.3178 -1.7782 41 1 9.7095 -2.6200 -0.3980 42 1 11.3031 -1.9713 0.0577 43 1 10.5128 -0.0961 2.2504 44 1 10.4885 -1.2728 3.5853 45 1 11.7881 -1.3320 2.3701 46 1 10.8697 -3.9582 1.5895 47 1 9.3407 -6.8268 4.7170 48 1 6.2835 3.1171 -0.0006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136046874.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:13 Heat of formation + Delta-G solvation = -94.054720 kcal Electronic energy + Delta-G solvation = -29054.944308 eV Core-core repulsion = 24831.754704 eV Total energy + Delta-G solvation = -4223.189604 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.22781 -40.44914 -39.10169 -37.85340 -36.98618 -34.81184 -32.86471 -32.11921 -31.20571 -30.48603 -29.10759 -27.85061 -26.41666 -26.15555 -23.76335 -23.04102 -22.97099 -21.34185 -20.54186 -19.82626 -18.55805 -17.57016 -17.28905 -16.68811 -16.53822 -16.24770 -16.07864 -15.76993 -15.72652 -15.17351 -14.64423 -14.58792 -14.35007 -14.15712 -13.68284 -13.60730 -13.35339 -13.32790 -13.23405 -12.67980 -12.63198 -12.23710 -12.20359 -12.14211 -11.99450 -11.73145 -11.69455 -11.51859 -11.31470 -11.02214 -10.66745 -10.56860 -10.30485 -10.20133 -10.00614 -9.96549 -9.60246 -9.26960 -9.09722 -8.96109 -8.91044 -7.28393 -5.78541 -3.13910 0.40603 0.89268 2.60554 3.03551 3.18126 3.34176 3.39416 3.44335 3.50528 3.93200 4.23616 4.50653 4.57204 4.60193 4.70745 4.79071 4.83593 4.85928 4.95555 5.02314 5.07702 5.13744 5.28136 5.28777 5.41551 5.47799 5.54414 5.61988 5.66718 5.71633 5.76921 5.83285 5.91072 5.94168 5.96630 6.10077 6.17367 6.22939 6.39515 6.47166 6.50479 6.57956 6.66597 6.81999 7.01601 7.47428 7.99322 8.14606 8.40705 9.20225 9.92543 10.13004 11.39749 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010786 B = 0.002715 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.261964 B =10310.819338 C =12187.473760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.103 3.897 4 C -0.103 4.103 5 C -0.074 4.074 6 C -0.092 4.092 7 C -0.103 4.103 8 C 0.560 3.440 9 O -0.537 6.537 10 N -0.711 5.711 11 C 0.143 3.857 12 H 0.094 0.906 13 C -0.162 4.162 14 C -0.138 4.138 15 C 0.177 3.823 16 H 0.056 0.944 17 C -0.169 4.169 18 N -0.751 5.751 19 C -0.242 4.242 20 H 0.089 0.911 21 C 0.004 3.996 22 N -0.933 5.933 23 Si 0.888 3.112 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.278 1.278 27 C -0.094 4.094 28 C 0.093 3.907 29 F -0.136 7.136 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.150 0.850 36 H 0.139 0.861 37 H 0.403 0.597 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.041 0.959 44 H 0.056 0.944 45 H 0.044 0.956 46 H 0.362 0.638 47 H 0.259 0.741 48 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.830 15.364 -14.141 24.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.027 3.973 4 C -0.104 4.104 5 C -0.092 4.092 6 C -0.111 4.111 7 C -0.106 4.106 8 C 0.347 3.653 9 O -0.415 6.415 10 N -0.363 5.363 11 C 0.039 3.961 12 H 0.112 0.888 13 C -0.221 4.221 14 C -0.177 4.177 15 C 0.068 3.932 16 H 0.074 0.926 17 C -0.228 4.228 18 N -0.394 5.394 19 C -0.372 4.372 20 H 0.107 0.893 21 C -0.192 4.192 22 N -0.581 5.581 23 Si 0.718 3.282 24 H -0.213 1.213 25 H -0.219 1.219 26 H -0.205 1.205 27 C -0.114 4.114 28 C 0.074 3.926 29 F -0.114 7.114 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.168 0.832 36 H 0.157 0.843 37 H 0.239 0.761 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.060 0.940 44 H 0.075 0.925 45 H 0.064 0.936 46 H 0.195 0.805 47 H 0.069 0.931 48 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.383 15.874 -13.891 24.460 hybrid contribution 0.486 -0.707 -0.324 0.917 sum -11.897 15.168 -14.215 23.952 Atomic orbital electron populations 1.22787 0.80188 1.03287 1.00200 1.87849 1.20259 1.26712 1.95531 1.21136 0.89133 0.85558 1.01487 1.19874 0.94965 0.92944 1.02665 1.20876 0.94188 0.97167 0.96935 1.21508 0.93797 0.98290 0.97487 1.19846 0.93581 0.93402 1.03817 1.18077 0.87004 0.83716 0.76495 1.90768 1.64364 1.36706 1.49634 1.46032 1.08611 1.08067 1.73624 1.21084 0.79365 0.98840 0.96833 0.88813 1.22180 1.01728 1.01977 0.96167 1.22265 1.02099 0.94698 0.98597 1.20175 0.97710 0.85275 0.90067 0.92611 1.22476 1.00290 0.98276 1.01804 1.42885 1.45242 1.09718 1.41558 1.19066 1.10707 0.98379 1.09007 0.89344 1.24700 0.98766 0.97187 0.98556 1.69709 1.40157 1.14738 1.33521 0.86501 0.84124 0.78942 0.78583 1.21268 1.21870 1.20489 1.21123 0.92331 0.98914 0.99038 1.17179 0.90732 0.79559 1.05119 1.91504 1.84392 1.41504 1.94021 0.89097 0.93756 0.93855 0.91229 0.91330 0.83193 0.84328 0.76080 0.92443 0.92340 0.91512 0.91055 0.90559 0.93960 0.92507 0.93645 0.80479 0.93098 0.83202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.37 9.17 -35.23 -0.32 -3.69 16 3 C 0.10 0.85 5.90 36.01 0.21 1.06 16 4 C -0.10 -1.02 5.89 -104.46 -0.62 -1.64 16 5 C -0.07 -0.73 9.36 -39.65 -0.37 -1.10 16 6 C -0.09 -0.93 9.54 -39.18 -0.37 -1.31 16 7 C -0.10 -1.21 5.87 -104.97 -0.62 -1.83 16 8 C 0.56 7.59 7.69 -12.33 -0.09 7.49 16 9 O -0.54 -8.84 16.04 5.32 0.09 -8.76 16 10 N -0.71 -8.67 4.37 -54.75 -0.24 -8.91 16 11 C 0.14 1.80 2.44 -67.93 -0.17 1.64 16 12 H 0.09 1.33 5.92 -51.93 -0.31 1.02 16 13 C -0.16 -1.77 9.45 37.16 0.35 -1.42 16 14 C -0.14 -1.92 4.41 -26.73 -0.12 -2.04 16 15 C 0.18 3.19 2.91 -67.93 -0.20 3.00 16 16 H 0.06 1.04 7.35 -51.93 -0.38 0.66 16 17 C -0.17 -2.97 9.29 37.16 0.35 -2.63 16 18 N -0.75 -16.97 4.87 -53.43 -0.26 -17.23 16 19 C -0.24 -6.62 10.41 -15.06 -0.16 -6.77 16 20 H 0.09 2.61 8.06 -52.48 -0.42 2.19 16 21 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 22 N -0.93 -28.90 13.97 55.49 0.78 -28.13 16 23 Si 0.89 21.80 27.99 -169.99 -4.76 17.04 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 26 H -0.28 -6.31 6.17 56.52 0.35 -5.96 16 27 C -0.09 -1.08 9.57 -39.11 -0.37 -1.46 16 28 C 0.09 1.00 7.24 -39.47 -0.29 0.71 16 29 F -0.14 -1.43 16.79 2.25 0.04 -1.40 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.15 1.36 6.99 -52.49 -0.37 0.99 16 36 H 0.14 1.18 6.42 -52.49 -0.34 0.85 16 37 H 0.40 4.33 6.51 -40.82 -0.27 4.06 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.04 0.67 6.53 -51.93 -0.34 0.33 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.36 8.07 5.57 -40.82 -0.23 7.85 16 47 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 48 H 0.15 1.71 7.66 -52.49 -0.40 1.31 16 LS Contribution 397.09 15.07 5.98 5.98 Total: -1.00 -33.02 397.09 -7.45 -40.47 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -7.31 Total: 9.61 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -1.45 Total: -4.99 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: 0.28 Total: -54.27 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -0.24 Total: -12.45 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.76 Total: 17.04 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.02 -7.45 -40.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136046874.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.583 kcal (2) G-P(sol) polarization free energy of solvation -33.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds