Wall clock time and date at job start Tue Mar 31 2020 22:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 113.99978 * 2 1 4 4 C 1.50700 * 109.46911 * 180.02562 * 3 2 1 5 5 C 1.38347 * 119.86923 * 0.02562 * 4 3 2 6 6 C 1.37940 * 120.17794 * 179.74375 * 5 4 3 7 7 C 1.39599 * 119.90165 * 0.51563 * 6 5 4 8 8 C 1.47857 * 120.13276 * 179.73779 * 7 6 5 9 9 O 1.21552 * 119.99726 * 184.87148 * 8 7 6 10 10 N 1.34773 * 119.99800 * 5.14808 * 8 7 6 11 11 C 1.46499 * 119.99918 * 174.55200 * 10 8 7 12 12 H 1.09000 * 109.47100 * 37.90135 * 11 10 8 13 13 C 1.52997 * 109.47286 * 277.89786 * 11 10 8 14 14 C 1.53006 * 109.46848 * 157.90006 * 11 10 8 15 15 C 1.52994 * 109.47026 * 296.78213 * 14 11 10 16 16 H 1.08994 * 109.47220 * 53.93798 * 15 14 11 17 17 C 1.53009 * 109.47356 * 293.93593 * 15 14 11 18 18 N 1.46500 * 109.46977 * 173.93680 * 15 14 11 19 19 C 1.36932 * 120.00048 * 207.85575 * 18 15 14 20 20 H 1.08004 * 120.00217 * 4.97778 * 19 18 15 21 21 C 1.38811 * 120.00202 * 184.97295 * 19 18 15 22 22 N 1.31620 * 120.00208 * 184.57847 * 21 19 18 23 23 Si 1.86808 * 119.99890 * 4.58508 * 21 19 18 24 24 H 1.48493 * 109.46929 * 93.96532 * 23 21 19 25 25 H 1.48497 * 109.46747 * 213.96664 * 23 21 19 26 26 H 1.48493 * 109.46761 * 333.96573 * 23 21 19 27 27 C 1.39533 * 119.73778 * 359.47054 * 7 6 5 28 28 C 1.38212 * 119.82288 * 0.27119 * 27 7 6 29 29 F 1.35098 * 119.95520 * 180.02562 * 28 27 7 30 30 H 1.09003 * 109.47280 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46994 * 300.00330 * 1 2 3 32 32 H 1.08991 * 109.47146 * 59.99878 * 1 2 3 33 33 H 1.08993 * 109.47610 * 60.00090 * 3 2 1 34 34 H 1.08999 * 109.47447 * 299.99845 * 3 2 1 35 35 H 1.08000 * 119.91020 * 0.02562 * 5 4 3 36 36 H 1.07992 * 120.05269 * 180.25297 * 6 5 4 37 37 H 0.97003 * 119.99722 * 354.55358 * 10 8 7 38 38 H 1.09000 * 109.47336 * 300.00204 * 13 11 10 39 39 H 1.09004 * 109.46857 * 60.00163 * 13 11 10 40 40 H 1.09002 * 109.47383 * 179.97438 * 13 11 10 41 41 H 1.08995 * 109.47138 * 56.78764 * 14 11 10 42 42 H 1.08999 * 109.46667 * 176.78409 * 14 11 10 43 43 H 1.08999 * 109.47034 * 60.00096 * 17 15 14 44 44 H 1.08996 * 109.46720 * 179.97438 * 17 15 14 45 45 H 1.09001 * 109.46491 * 300.00398 * 17 15 14 46 46 H 0.96997 * 119.99961 * 27.85801 * 18 15 14 47 47 H 0.96998 * 119.99960 * 179.97438 * 22 21 19 48 48 H 1.07998 * 120.08882 * 180.25433 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.1046 -0.0640 -0.0016 6 6 5.4791 -0.1804 -0.0076 7 6 6.2746 0.9667 -0.0017 8 6 7.7484 0.8479 -0.0021 9 8 8.4384 1.8441 0.0924 10 7 8.3266 -0.3644 -0.1129 11 6 9.7826 -0.4733 -0.2336 12 1 10.2568 0.2734 0.4034 13 6 10.1929 -0.2372 -1.6885 14 6 10.2272 -1.8712 0.2014 15 6 9.8887 -2.0773 1.6791 16 1 8.8307 -1.8716 1.8415 17 6 10.7301 -1.1262 2.5326 18 7 10.1808 -3.4619 2.0584 19 6 9.4814 -4.0553 3.0751 20 1 8.6610 -3.5319 3.5436 21 6 9.8267 -5.3296 3.5037 22 7 9.0996 -5.9362 4.4179 23 14 11.3237 -6.1837 2.7830 24 1 12.5021 -5.9333 3.6512 25 1 11.0693 -7.6446 2.7029 26 1 11.5895 -5.6522 1.4222 27 6 5.6735 2.2259 -0.0010 28 6 4.2953 2.3296 -0.0005 29 9 3.7104 3.5475 -0.0004 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.6887 1.8464 0.8899 34 1 1.6887 1.8464 -0.8900 35 1 3.4890 -0.9514 -0.0024 36 1 5.9391 -1.1574 -0.0125 37 1 7.7787 -1.1649 -0.1128 38 1 9.7187 -0.9839 -2.3254 39 1 9.8761 0.7587 -1.9983 40 1 11.2762 -0.3178 -1.7782 41 1 9.7095 -2.6200 -0.3980 42 1 11.3031 -1.9713 0.0577 43 1 10.5128 -0.0961 2.2504 44 1 10.4885 -1.2728 3.5853 45 1 11.7881 -1.3320 2.3701 46 1 10.8697 -3.9582 1.5895 47 1 9.3407 -6.8268 4.7170 48 1 6.2835 3.1171 -0.0006 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136046874.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:12 Heat of formation + Delta-G solvation = -115.019128 kcal Electronic energy + Delta-G solvation = -29055.853393 eV Core-core repulsion = 24831.754704 eV Total energy + Delta-G solvation = -4224.098689 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.06249 -41.43187 -39.94545 -38.67029 -38.19477 -36.29062 -34.17610 -33.49909 -32.32112 -31.49433 -30.68188 -28.50311 -27.62689 -26.79063 -25.50930 -24.05772 -23.80037 -22.49446 -21.68824 -21.17463 -19.80045 -19.24329 -18.07389 -17.47960 -17.22916 -17.17815 -16.96169 -16.66975 -16.52239 -16.45927 -16.16617 -15.82866 -15.35086 -15.28386 -15.08071 -14.66897 -14.45453 -14.41543 -14.09759 -13.97341 -13.88099 -13.46622 -13.38733 -12.97712 -12.94635 -12.85342 -12.84011 -12.70115 -12.47027 -12.23031 -12.16009 -12.01843 -11.82191 -11.60625 -11.44965 -11.09482 -10.96520 -10.88054 -10.18317 -10.03605 -9.76381 -9.28422 -7.98173 -5.31049 -0.45890 0.05387 1.39825 1.45358 1.51897 1.65395 2.05892 2.52191 2.58209 2.59539 3.10330 3.33423 3.41904 3.50169 3.68016 3.79671 3.95263 4.00282 4.07403 4.15398 4.22123 4.31517 4.32453 4.45931 4.52539 4.58978 4.59210 4.60501 4.65747 4.79795 4.84435 4.90509 4.93077 4.95301 4.97615 5.06589 5.11310 5.11888 5.14821 5.33174 5.39669 5.46258 5.60076 5.66545 5.82942 6.11582 6.26000 6.47597 7.12393 7.13640 7.89824 8.10003 9.23419 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010786 B = 0.002715 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.261964 B =10310.819338 C =12187.473760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.404 6.404 3 C 0.102 3.898 4 C -0.100 4.100 5 C -0.076 4.076 6 C -0.086 4.086 7 C -0.117 4.117 8 C 0.560 3.440 9 O -0.572 6.572 10 N -0.706 5.706 11 C 0.147 3.853 12 H 0.079 0.921 13 C -0.155 4.155 14 C -0.123 4.123 15 C 0.171 3.829 16 H 0.045 0.955 17 C -0.161 4.161 18 N -0.751 5.751 19 C -0.224 4.224 20 H 0.053 0.947 21 C -0.067 4.067 22 N -0.986 5.986 23 Si 0.957 3.043 24 H -0.288 1.288 25 H -0.299 1.299 26 H -0.243 1.243 27 C -0.102 4.102 28 C 0.089 3.911 29 F -0.136 7.136 30 H 0.098 0.902 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.160 0.840 36 H 0.154 0.846 37 H 0.410 0.590 38 H 0.069 0.931 39 H 0.047 0.953 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.059 0.941 44 H 0.026 0.974 45 H 0.055 0.945 46 H 0.368 0.632 47 H 0.256 0.744 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.434 15.279 -16.355 25.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.324 6.324 3 C 0.026 3.974 4 C -0.101 4.101 5 C -0.094 4.094 6 C -0.104 4.104 7 C -0.121 4.121 8 C 0.348 3.652 9 O -0.453 6.453 10 N -0.358 5.358 11 C 0.042 3.958 12 H 0.097 0.903 13 C -0.213 4.213 14 C -0.162 4.162 15 C 0.063 3.937 16 H 0.064 0.936 17 C -0.221 4.221 18 N -0.395 5.395 19 C -0.355 4.355 20 H 0.071 0.929 21 C -0.258 4.258 22 N -0.637 5.637 23 Si 0.785 3.215 24 H -0.215 1.215 25 H -0.226 1.226 26 H -0.168 1.168 27 C -0.121 4.121 28 C 0.069 3.931 29 F -0.115 7.115 30 H 0.117 0.883 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.178 0.822 36 H 0.171 0.829 37 H 0.248 0.752 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.110 0.890 43 H 0.077 0.923 44 H 0.045 0.955 45 H 0.074 0.926 46 H 0.202 0.798 47 H 0.065 0.935 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.987 15.822 -16.154 25.592 hybrid contribution 0.230 -0.588 0.403 0.749 sum -11.757 15.234 -15.751 24.868 Atomic orbital electron populations 1.22968 0.78714 1.04188 1.01169 1.87810 1.21908 1.26920 1.95712 1.21201 0.87894 0.85777 1.02507 1.20122 0.96139 0.92602 1.01224 1.21027 0.94099 0.97559 0.96727 1.21662 0.93934 0.98386 0.96466 1.19748 0.92727 0.94065 1.05515 1.18314 0.87620 0.83492 0.75778 1.90745 1.65234 1.37803 1.51483 1.46016 1.08725 1.08061 1.72948 1.21030 0.79358 0.97464 0.97935 0.90309 1.22108 1.02817 1.01737 0.94624 1.22111 1.03283 0.95645 0.95160 1.20385 0.97313 0.82976 0.93007 0.93648 1.22367 1.00755 0.99213 0.99775 1.42856 1.44818 1.11411 1.40373 1.18997 1.09451 0.97964 1.09088 0.92886 1.25519 1.02252 0.98343 0.99667 1.69896 1.42574 1.15199 1.35982 0.85371 0.79601 0.77136 0.79407 1.21514 1.22577 1.16751 1.21143 0.92822 0.98795 0.99390 1.17170 0.90476 0.79858 1.05569 1.91500 1.84305 1.41570 1.94078 0.88313 0.93019 0.92657 0.90408 0.89956 0.82234 0.82853 0.75184 0.91168 0.93382 0.90000 0.90036 0.88980 0.92255 0.95463 0.92592 0.79848 0.93523 0.83813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.40 -6.44 9.17 -148.98 -1.37 -7.81 16 3 C 0.10 1.52 5.90 71.24 0.42 1.94 16 4 C -0.10 -1.87 5.89 -19.76 -0.12 -1.99 16 5 C -0.08 -1.41 9.36 22.22 0.21 -1.20 16 6 C -0.09 -1.65 9.54 22.53 0.21 -1.44 16 7 C -0.12 -2.73 5.87 -20.09 -0.12 -2.84 16 8 C 0.56 14.99 7.69 86.79 0.67 15.65 16 9 O -0.57 -18.97 16.04 -3.88 -0.06 -19.03 16 10 N -0.71 -16.31 4.37 -445.40 -1.95 -18.25 16 11 C 0.15 3.39 2.44 44.99 0.11 3.50 16 12 H 0.08 2.11 5.92 -2.39 -0.01 2.09 16 13 C -0.15 -2.95 9.45 71.98 0.68 -2.27 16 14 C -0.12 -3.08 4.41 30.59 0.13 -2.94 16 15 C 0.17 5.91 2.91 44.99 0.13 6.04 16 16 H 0.05 1.67 7.35 -2.39 -0.02 1.65 16 17 C -0.16 -5.51 9.29 71.99 0.67 -4.84 16 18 N -0.75 -32.72 4.87 -322.94 -1.57 -34.29 16 19 C -0.22 -12.32 10.41 84.03 0.88 -11.44 16 20 H 0.05 3.24 8.06 -2.91 -0.02 3.22 16 21 C -0.07 -3.84 5.50 84.86 0.47 -3.38 16 22 N -0.99 -62.45 13.97 21.65 0.30 -62.15 16 23 Si 0.96 44.36 27.99 68.60 1.92 46.28 16 24 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 25 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 26 H -0.24 -9.74 6.17 99.48 0.61 -9.12 16 27 C -0.10 -2.35 9.57 22.58 0.22 -2.14 16 28 C 0.09 1.85 7.24 22.34 0.16 2.01 16 29 F -0.14 -2.80 16.79 44.97 0.75 -2.04 16 30 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.16 2.66 6.99 -2.91 -0.02 2.64 16 36 H 0.15 2.40 6.42 -2.91 -0.02 2.38 16 37 H 0.41 8.17 6.51 -92.71 -0.60 7.56 16 38 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.06 1.82 6.53 -2.39 -0.02 1.80 16 44 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.37 15.22 5.57 -92.71 -0.52 14.70 16 47 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 48 H 0.14 3.42 7.66 -2.91 -0.02 3.40 16 Total: -1.00 -72.20 397.09 3.77 -68.43 By element: Atomic # 1 Polarization: 32.94 SS G_CDS: -0.23 Total: 32.72 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 5.97 Total: -3.84 kcal Atomic # 7 Polarization: -111.48 SS G_CDS: -3.22 Total: -114.70 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -1.43 Total: -26.84 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.75 Total: -2.04 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.92 Total: 46.28 kcal Total: -72.20 3.77 -68.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136046874.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.591 kcal (2) G-P(sol) polarization free energy of solvation -72.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds