Wall clock time and date at job start Tue Mar 31 2020 20:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46909 * 2 1 4 4 H 1.09006 * 109.47300 * 55.00428 * 3 2 1 5 5 F 1.39896 * 109.47510 * 294.99878 * 3 2 1 6 6 C 1.50704 * 109.46971 * 175.00156 * 3 2 1 7 7 O 1.21281 * 120.00125 * 45.00119 * 6 3 2 8 8 N 1.34786 * 119.99970 * 225.00016 * 6 3 2 9 9 C 1.46501 * 119.99809 * 179.97438 * 8 6 3 10 10 C 1.52995 * 109.46632 * 179.97438 * 9 8 6 11 11 C 1.53005 * 109.46948 * 180.02562 * 10 9 8 12 12 N 1.46897 * 109.47450 * 180.02562 * 11 10 9 13 13 C 1.46898 * 111.00074 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.46794 * 179.97438 * 13 12 11 15 15 C 1.38299 * 119.93387 * 269.72448 * 14 13 12 16 16 C 1.38104 * 120.07099 * 179.72925 * 15 14 13 17 17 C 1.38876 * 119.93035 * 0.56939 * 16 15 14 18 18 O 1.35749 * 120.07227 * 179.68373 * 17 16 15 19 19 C 1.34827 * 117.00097 * 174.48572 * 18 17 16 20 20 H 1.07998 * 120.00267 * 5.05424 * 19 18 17 21 21 C 1.38661 * 119.99659 * 185.06077 * 19 18 17 22 22 N 1.31556 * 119.99980 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99554 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47290 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46811 * 119.99521 * 23 21 19 26 26 H 1.48497 * 109.46825 * 239.99487 * 23 21 19 27 27 C 1.38884 * 119.85904 * 359.70227 * 17 16 15 28 28 C 1.38098 * 119.93184 * 0.02562 * 27 17 16 29 29 H 1.09010 * 109.47178 * 300.00060 * 1 2 3 30 30 H 1.08996 * 109.47146 * 59.99847 * 1 2 3 31 31 H 1.08999 * 109.47431 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46842 * 240.00334 * 2 1 3 33 33 H 1.08996 * 109.47146 * 120.00153 * 2 1 3 34 34 H 0.96993 * 119.99678 * 0.02562 * 8 6 3 35 35 H 1.09003 * 109.46871 * 60.00447 * 9 8 6 36 36 H 1.08998 * 109.47365 * 300.00297 * 9 8 6 37 37 H 1.09003 * 109.47050 * 60.00651 * 10 9 8 38 38 H 1.08998 * 109.47565 * 300.00269 * 10 9 8 39 39 H 1.09003 * 109.46860 * 60.00355 * 11 10 9 40 40 H 1.08998 * 109.47061 * 300.00398 * 11 10 9 41 41 H 1.00905 * 111.00111 * 303.95864 * 12 11 10 42 42 H 1.09002 * 109.46923 * 299.99564 * 13 12 11 43 43 H 1.08993 * 109.47205 * 60.00244 * 13 12 11 44 44 H 1.07999 * 119.96348 * 359.97438 * 15 14 13 45 45 H 1.08002 * 120.03284 * 180.27804 * 16 15 14 46 46 H 0.97000 * 119.99701 * 180.02562 * 22 21 19 47 47 H 1.08000 * 120.03312 * 179.97438 * 27 17 16 48 48 H 1.08002 * 119.96132 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 9 1.6699 2.0680 -1.1954 6 6 3.5419 1.4443 0.1238 7 8 4.2064 0.6811 -0.5447 8 7 4.1467 2.2941 0.9774 9 6 5.6067 2.2955 1.0982 10 6 6.0324 3.3458 2.1260 11 6 7.5573 3.3477 2.2517 12 7 7.9660 4.3557 3.2390 13 6 9.4273 4.3864 3.3859 14 6 9.8079 5.4303 4.4040 15 6 10.0579 6.7292 4.0002 16 6 10.4014 7.6894 4.9316 17 6 10.5073 7.3468 6.2732 18 8 10.8510 8.2868 7.1902 19 6 10.8246 7.9161 8.4863 20 1 10.6187 6.8893 8.7502 21 6 11.0617 8.8533 9.4803 22 7 11.3129 10.1040 9.1588 23 14 11.0258 8.3396 11.2760 24 1 10.7237 6.8887 11.3698 25 1 12.3479 8.6114 11.8951 26 1 9.9767 9.1104 11.9904 27 6 10.2611 6.0402 6.6748 28 6 9.9125 5.0860 5.7394 29 1 -0.3634 0.5139 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.6152 2.9042 1.5123 35 1 6.0510 2.5327 0.1315 36 1 5.9455 1.3114 1.4220 37 1 5.5881 3.1090 3.0928 38 1 5.6937 4.3297 1.8017 39 1 8.0012 3.5847 1.2848 40 1 7.8963 2.3638 2.5758 41 1 7.6082 5.2670 2.9947 42 1 9.7797 3.4096 3.7173 43 1 9.8838 4.6313 2.4269 44 1 9.9805 6.9938 2.9561 45 1 10.5921 8.7045 4.6162 46 1 11.4791 10.7595 9.8542 47 1 10.3431 5.7706 7.7173 48 1 9.7214 4.0697 6.0510 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164021116.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:22 Heat of formation + Delta-G solvation = -105.552574 kcal Electronic energy + Delta-G solvation = -26957.590606 eV Core-core repulsion = 22733.902418 eV Total energy + Delta-G solvation = -4223.688188 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.38008 -40.10202 -39.10713 -37.44697 -36.44515 -35.10086 -34.52650 -32.48028 -31.90579 -30.19257 -29.49077 -28.12655 -25.87028 -25.05282 -23.45187 -22.43426 -22.04501 -21.93253 -20.93840 -20.38444 -18.22796 -18.00145 -17.43526 -16.96693 -16.71228 -16.20665 -15.98716 -15.40571 -15.18840 -14.77872 -14.60085 -14.47351 -14.44230 -14.28725 -13.96212 -13.59597 -13.47430 -13.37870 -13.13403 -12.84326 -12.70569 -12.63132 -12.44832 -12.20956 -12.01696 -11.77297 -11.65928 -11.59091 -11.44349 -11.27821 -11.21191 -10.81489 -10.69455 -10.56084 -10.43724 -10.24911 -9.64493 -9.34492 -8.86051 -8.45754 -8.18960 -7.20885 -6.47127 -4.05852 1.91071 2.19795 2.25365 2.43946 3.10777 3.12625 3.18152 3.84203 3.94144 3.95071 4.04473 4.08911 4.31870 4.56901 4.57841 4.75554 4.79735 4.85331 4.87618 5.07483 5.08255 5.15048 5.23188 5.26143 5.34041 5.36598 5.39448 5.43355 5.52024 5.65278 5.69949 5.74570 5.75097 5.82698 5.87049 5.88314 6.19452 6.41026 6.67857 6.83430 6.88349 6.95028 7.07710 7.18433 7.35414 7.40571 7.44209 7.54554 7.80979 7.98216 8.98778 9.68706 10.70949 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020082 B = 0.001357 C = 0.001315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.948028 B =20631.035001 C =21282.452750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.141 4.141 3 C 0.083 3.917 4 H 0.101 0.899 5 F -0.189 7.189 6 C 0.490 3.510 7 O -0.520 6.520 8 N -0.720 5.720 9 C 0.118 3.882 10 C -0.130 4.130 11 C 0.061 3.939 12 N -0.685 5.685 13 C 0.119 3.881 14 C -0.187 4.187 15 C -0.069 4.069 16 C -0.194 4.194 17 C 0.156 3.844 18 O -0.178 6.178 19 C -0.392 4.392 20 H 0.093 0.907 21 C 0.039 3.961 22 N -0.862 5.862 23 Si 0.941 3.059 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.235 4.235 28 C -0.048 4.048 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.405 0.595 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.030 0.970 40 H 0.074 0.926 41 H 0.342 0.658 42 H 0.070 0.930 43 H 0.028 0.972 44 H 0.107 0.893 45 H 0.116 0.884 46 H 0.269 0.731 47 H 0.126 0.874 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.529 -16.954 -15.423 28.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.179 4.179 3 C 0.044 3.956 4 H 0.119 0.881 5 F -0.170 7.170 6 C 0.273 3.727 7 O -0.395 6.395 8 N -0.373 5.373 9 C -0.006 4.006 10 C -0.168 4.168 11 C -0.069 4.069 12 N -0.317 5.317 13 C -0.009 4.009 14 C -0.188 4.188 15 C -0.087 4.087 16 C -0.213 4.213 17 C 0.102 3.898 18 O -0.082 6.082 19 C -0.468 4.468 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.497 5.497 23 Si 0.766 3.234 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.255 4.255 28 C -0.067 4.067 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.239 0.761 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.092 0.908 41 H 0.160 0.840 42 H 0.089 0.911 43 H 0.047 0.953 44 H 0.125 0.875 45 H 0.134 0.866 46 H 0.079 0.921 47 H 0.144 0.856 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -16.992 -17.461 -15.298 28.768 hybrid contribution 0.016 0.609 0.358 0.706 sum -16.976 -16.853 -14.940 28.203 Atomic orbital electron populations 1.21782 0.93972 1.02807 1.02596 1.21998 0.97432 0.93382 1.05131 1.21640 0.91787 0.96503 0.85684 0.88123 1.92894 1.92008 1.83879 1.48239 1.21018 0.90468 0.80900 0.80268 1.90751 1.66148 1.39090 1.43518 1.46089 1.08601 1.39483 1.43093 1.21409 0.79009 1.00237 0.99953 1.21770 0.96891 0.98772 0.99411 1.21817 0.93739 0.97432 0.93915 1.60562 1.11913 1.10304 1.48898 1.20611 0.86429 0.97990 0.95899 1.19102 1.11234 0.94346 0.94159 1.20478 0.98336 0.92300 0.97627 1.20169 1.10507 0.99784 0.90848 1.19404 0.91455 0.88812 0.90139 1.83974 1.73663 1.34800 1.15724 1.21388 1.50353 0.96425 0.78615 0.88972 1.25295 0.96512 0.94717 0.99985 1.70049 1.43977 1.01771 1.33933 0.85645 0.78282 0.78878 0.80620 1.19077 1.20142 1.20132 1.21174 1.10488 0.93419 1.00394 1.20569 0.96127 0.97948 0.92078 0.92235 0.91863 0.91588 0.89398 0.89703 0.76063 0.91188 0.90920 0.90059 0.91176 0.95200 0.90792 0.83996 0.91125 0.95344 0.87507 0.86618 0.92065 0.85584 0.87502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.83 37.16 0.37 -0.27 16 2 C -0.14 -0.78 5.41 -26.73 -0.14 -0.92 16 3 C 0.08 0.51 3.77 -27.88 -0.11 0.40 16 4 H 0.10 0.28 8.00 -51.93 -0.42 -0.13 16 5 F -0.19 -1.63 16.75 2.25 0.04 -1.59 16 6 C 0.49 4.16 7.17 -10.98 -0.08 4.08 16 7 O -0.52 -6.55 16.61 5.56 0.09 -6.45 16 8 N -0.72 -4.53 5.56 -60.29 -0.33 -4.86 16 9 C 0.12 0.82 5.67 -4.04 -0.02 0.80 16 10 C -0.13 -0.86 5.59 -26.73 -0.15 -1.01 16 11 C 0.06 0.52 5.69 -3.82 -0.02 0.49 16 12 N -0.69 -7.67 6.49 -115.06 -0.75 -8.42 16 13 C 0.12 1.50 5.81 -4.98 -0.03 1.48 16 14 C -0.19 -3.06 5.40 -104.58 -0.56 -3.63 16 15 C -0.07 -1.18 9.69 -39.61 -0.38 -1.56 16 16 C -0.19 -4.02 9.99 -39.39 -0.39 -4.41 16 17 C 0.16 3.73 6.65 -39.11 -0.26 3.47 16 18 O -0.18 -5.07 9.76 0.06 0.00 -5.06 16 19 C -0.39 -10.87 9.49 30.89 0.29 -10.58 16 20 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 21 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 22 N -0.86 -25.12 13.67 55.48 0.76 -24.36 16 23 Si 0.94 20.35 29.55 -169.99 -5.02 15.33 16 24 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 25 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 26 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 27 C -0.24 -5.06 9.17 -39.39 -0.36 -5.42 16 28 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 29 H 0.06 0.18 8.14 -51.92 -0.42 -0.24 16 30 H 0.06 0.30 7.93 -51.93 -0.41 -0.11 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.09 0.62 8.05 -51.93 -0.42 0.20 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.40 1.43 8.36 -40.82 -0.34 1.09 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.34 3.77 8.72 -39.29 -0.34 3.42 16 42 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 43 H 0.03 0.34 8.08 -51.93 -0.42 -0.08 16 44 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 45 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 46 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 47 H 0.13 2.73 5.64 -52.49 -0.30 2.43 16 48 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 408.04 15.07 6.15 6.15 Total: -1.00 -33.24 408.04 -8.95 -42.19 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -7.55 Total: 4.44 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -2.34 Total: -17.36 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: -0.32 Total: -37.64 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.52 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.24 -8.95 -42.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164021116.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.359 kcal (2) G-P(sol) polarization free energy of solvation -33.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds