Wall clock time and date at job start Tue Mar 31 2020 20:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46909 * 2 1 4 4 H 1.09006 * 109.47300 * 55.00428 * 3 2 1 5 5 F 1.39896 * 109.47510 * 294.99878 * 3 2 1 6 6 C 1.50704 * 109.46971 * 175.00156 * 3 2 1 7 7 O 1.21281 * 120.00125 * 45.00119 * 6 3 2 8 8 N 1.34786 * 119.99970 * 225.00016 * 6 3 2 9 9 C 1.46501 * 119.99809 * 179.97438 * 8 6 3 10 10 C 1.52995 * 109.46632 * 179.97438 * 9 8 6 11 11 C 1.53005 * 109.46948 * 180.02562 * 10 9 8 12 12 N 1.46897 * 109.47450 * 180.02562 * 11 10 9 13 13 C 1.46898 * 111.00074 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.46794 * 179.97438 * 13 12 11 15 15 C 1.38299 * 119.93387 * 269.72448 * 14 13 12 16 16 C 1.38104 * 120.07099 * 179.72925 * 15 14 13 17 17 C 1.38876 * 119.93035 * 0.56939 * 16 15 14 18 18 O 1.35749 * 120.07227 * 179.68373 * 17 16 15 19 19 C 1.34827 * 117.00097 * 174.48572 * 18 17 16 20 20 H 1.07998 * 120.00267 * 5.05424 * 19 18 17 21 21 C 1.38661 * 119.99659 * 185.06077 * 19 18 17 22 22 N 1.31556 * 119.99980 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99554 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47290 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46811 * 119.99521 * 23 21 19 26 26 H 1.48497 * 109.46825 * 239.99487 * 23 21 19 27 27 C 1.38884 * 119.85904 * 359.70227 * 17 16 15 28 28 C 1.38098 * 119.93184 * 0.02562 * 27 17 16 29 29 H 1.09010 * 109.47178 * 300.00060 * 1 2 3 30 30 H 1.08996 * 109.47146 * 59.99847 * 1 2 3 31 31 H 1.08999 * 109.47431 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46842 * 240.00334 * 2 1 3 33 33 H 1.08996 * 109.47146 * 120.00153 * 2 1 3 34 34 H 0.96993 * 119.99678 * 0.02562 * 8 6 3 35 35 H 1.09003 * 109.46871 * 60.00447 * 9 8 6 36 36 H 1.08998 * 109.47365 * 300.00297 * 9 8 6 37 37 H 1.09003 * 109.47050 * 60.00651 * 10 9 8 38 38 H 1.08998 * 109.47565 * 300.00269 * 10 9 8 39 39 H 1.09003 * 109.46860 * 60.00355 * 11 10 9 40 40 H 1.08998 * 109.47061 * 300.00398 * 11 10 9 41 41 H 1.00905 * 111.00111 * 303.95864 * 12 11 10 42 42 H 1.09002 * 109.46923 * 299.99564 * 13 12 11 43 43 H 1.08993 * 109.47205 * 60.00244 * 13 12 11 44 44 H 1.07999 * 119.96348 * 359.97438 * 15 14 13 45 45 H 1.08002 * 120.03284 * 180.27804 * 16 15 14 46 46 H 0.97000 * 119.99701 * 180.02562 * 22 21 19 47 47 H 1.08000 * 120.03312 * 179.97438 * 27 17 16 48 48 H 1.08002 * 119.96132 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 9 1.6699 2.0680 -1.1954 6 6 3.5419 1.4443 0.1238 7 8 4.2064 0.6811 -0.5447 8 7 4.1467 2.2941 0.9774 9 6 5.6067 2.2955 1.0982 10 6 6.0324 3.3458 2.1260 11 6 7.5573 3.3477 2.2517 12 7 7.9660 4.3557 3.2390 13 6 9.4273 4.3864 3.3859 14 6 9.8079 5.4303 4.4040 15 6 10.0579 6.7292 4.0002 16 6 10.4014 7.6894 4.9316 17 6 10.5073 7.3468 6.2732 18 8 10.8510 8.2868 7.1902 19 6 10.8246 7.9161 8.4863 20 1 10.6187 6.8893 8.7502 21 6 11.0617 8.8533 9.4803 22 7 11.3129 10.1040 9.1588 23 14 11.0258 8.3396 11.2760 24 1 10.7237 6.8887 11.3698 25 1 12.3479 8.6114 11.8951 26 1 9.9767 9.1104 11.9904 27 6 10.2611 6.0402 6.6748 28 6 9.9125 5.0860 5.7394 29 1 -0.3634 0.5139 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.6152 2.9042 1.5123 35 1 6.0510 2.5327 0.1315 36 1 5.9455 1.3114 1.4220 37 1 5.5881 3.1090 3.0928 38 1 5.6937 4.3297 1.8017 39 1 8.0012 3.5847 1.2848 40 1 7.8963 2.3638 2.5758 41 1 7.6082 5.2670 2.9947 42 1 9.7797 3.4096 3.7173 43 1 9.8838 4.6313 2.4269 44 1 9.9805 6.9938 2.9561 45 1 10.5921 8.7045 4.6162 46 1 11.4791 10.7595 9.8542 47 1 10.3431 5.7706 7.7173 48 1 9.7214 4.0697 6.0510 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164021116.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:21 Heat of formation + Delta-G solvation = -128.626817 kcal Electronic energy + Delta-G solvation = -26958.591180 eV Core-core repulsion = 22733.902418 eV Total energy + Delta-G solvation = -4224.688763 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -48.95552 -40.79765 -40.74559 -38.76443 -37.50599 -35.98345 -34.96935 -34.30944 -32.90992 -31.76887 -30.65169 -28.76373 -27.53156 -26.21981 -24.42432 -23.59982 -22.93605 -22.62194 -21.91958 -21.47748 -19.82411 -18.85990 -18.75264 -17.98424 -17.40184 -16.92138 -16.63959 -16.42183 -16.28280 -16.07450 -15.91045 -15.66813 -15.51117 -15.18100 -15.09244 -14.78305 -14.60430 -14.54266 -14.23974 -13.92988 -13.62262 -13.57686 -13.30290 -13.11113 -13.01974 -12.89848 -12.81791 -12.43464 -12.39456 -12.23686 -12.10782 -12.03760 -11.94642 -11.84654 -11.81892 -11.15449 -10.92711 -10.79201 -10.26005 -9.75651 -9.32718 -8.88759 -8.46624 -6.14631 0.62363 0.69415 1.26464 1.35803 1.43797 1.54023 1.88067 2.18335 2.79885 3.11380 3.34926 3.45699 3.53306 3.53948 3.68426 3.89290 3.98406 4.06997 4.09915 4.18102 4.20092 4.24915 4.39942 4.48974 4.51038 4.57160 4.63231 4.69674 4.72676 4.75513 4.78517 4.86727 5.03229 5.11358 5.12005 5.15689 5.17695 5.20048 5.32245 5.32641 5.34416 5.58688 5.73903 5.83837 6.04195 6.10909 6.26775 6.31659 6.51214 6.98491 6.98704 7.79593 8.76860 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020082 B = 0.001357 C = 0.001315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.948028 B =20631.035001 C =21282.452750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.141 4.141 3 C 0.083 3.917 4 H 0.142 0.858 5 F -0.205 7.205 6 C 0.486 3.514 7 O -0.569 6.569 8 N -0.707 5.707 9 C 0.121 3.879 10 C -0.117 4.117 11 C 0.062 3.938 12 N -0.694 5.694 13 C 0.122 3.878 14 C -0.159 4.159 15 C -0.059 4.059 16 C -0.205 4.205 17 C 0.113 3.887 18 O -0.234 6.234 19 C -0.413 4.413 20 H 0.101 0.899 21 C -0.023 4.023 22 N -0.921 5.921 23 Si 1.018 2.982 24 H -0.252 1.252 25 H -0.269 1.269 26 H -0.268 1.268 27 C -0.245 4.245 28 C -0.050 4.050 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.420 0.580 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.037 0.963 40 H 0.075 0.925 41 H 0.344 0.656 42 H 0.081 0.919 43 H 0.047 0.953 44 H 0.147 0.853 45 H 0.112 0.888 46 H 0.272 0.728 47 H 0.116 0.884 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.219 -19.134 -16.010 31.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.179 4.179 3 C 0.044 3.956 4 H 0.159 0.841 5 F -0.186 7.186 6 C 0.270 3.730 7 O -0.448 6.448 8 N -0.359 5.359 9 C -0.003 4.003 10 C -0.155 4.155 11 C -0.067 4.067 12 N -0.325 5.325 13 C -0.006 4.006 14 C -0.160 4.160 15 C -0.078 4.078 16 C -0.224 4.224 17 C 0.062 3.938 18 O -0.141 6.141 19 C -0.489 4.489 20 H 0.118 0.882 21 C -0.220 4.220 22 N -0.559 5.559 23 Si 0.838 3.162 24 H -0.175 1.175 25 H -0.194 1.194 26 H -0.193 1.193 27 C -0.264 4.264 28 C -0.068 4.068 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.113 0.887 34 H 0.258 0.742 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.055 0.945 40 H 0.094 0.906 41 H 0.162 0.838 42 H 0.100 0.900 43 H 0.065 0.935 44 H 0.165 0.835 45 H 0.130 0.870 46 H 0.081 0.919 47 H 0.134 0.866 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -18.715 -19.661 -15.913 31.465 hybrid contribution 0.466 1.084 0.208 1.198 sum -18.249 -18.577 -15.705 30.410 Atomic orbital electron populations 1.21772 0.92748 1.03344 1.02973 1.22000 0.98412 0.92991 1.04528 1.21878 0.90210 0.97333 0.86208 0.84055 1.92862 1.91982 1.84184 1.49544 1.21498 0.91463 0.80301 0.79713 1.90728 1.67368 1.41147 1.45526 1.46014 1.08561 1.38921 1.42421 1.21317 0.79346 1.00091 0.99563 1.21620 0.95700 0.98920 0.99231 1.21847 0.94825 0.96598 0.93472 1.60482 1.10637 1.11055 1.50347 1.20598 0.87754 0.96954 0.95325 1.19637 1.07021 0.94901 0.94396 1.20895 0.96326 0.91764 0.98803 1.20444 1.10786 1.00812 0.90407 1.19967 0.93485 0.89487 0.90816 1.83937 1.76891 1.36894 1.16395 1.21857 1.50699 0.97132 0.79207 0.88160 1.26575 0.95863 0.94550 1.05002 1.70190 1.46781 1.03310 1.35647 0.84533 0.78606 0.79190 0.73905 1.17492 1.19361 1.19319 1.21260 1.10948 0.93328 1.00841 1.20907 0.95151 0.98483 0.92280 0.90582 0.92701 0.91047 0.91679 0.88726 0.74201 0.92181 0.91558 0.89840 0.90331 0.94503 0.90622 0.83756 0.90029 0.93515 0.83544 0.87021 0.91873 0.86631 0.84654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.83 71.98 0.71 -0.27 16 2 C -0.14 -1.39 5.41 30.59 0.17 -1.22 16 3 C 0.08 0.86 3.77 29.85 0.11 0.97 16 4 H 0.14 0.29 8.00 -2.38 -0.02 0.27 16 5 F -0.20 -3.30 16.75 44.97 0.75 -2.55 16 6 C 0.49 7.60 7.17 87.66 0.63 8.23 16 7 O -0.57 -14.27 16.61 -3.03 -0.05 -14.32 16 8 N -0.71 -7.21 5.56 -463.05 -2.57 -9.79 16 9 C 0.12 1.42 5.67 86.38 0.49 1.91 16 10 C -0.12 -1.14 5.59 30.59 0.17 -0.97 16 11 C 0.06 0.81 5.69 86.31 0.49 1.30 16 12 N -0.69 -12.52 6.49 -517.94 -3.36 -15.88 16 13 C 0.12 2.51 5.81 85.56 0.50 3.01 16 14 C -0.16 -4.63 5.40 -19.83 -0.11 -4.74 16 15 C -0.06 -1.87 9.69 22.25 0.22 -1.66 16 16 C -0.21 -8.55 9.99 22.39 0.22 -8.32 16 17 C 0.11 5.59 6.65 22.58 0.15 5.74 16 18 O -0.23 -14.16 9.76 -22.70 -0.22 -14.38 16 19 C -0.41 -24.10 9.49 67.92 0.64 -23.45 16 20 H 0.10 5.39 5.20 -2.91 -0.02 5.38 16 21 C -0.02 -1.28 5.49 84.84 0.47 -0.82 16 22 N -0.92 -56.51 13.67 21.62 0.30 -56.21 16 23 Si 1.02 42.76 29.55 68.60 2.03 44.79 16 24 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 25 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 26 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 27 C -0.24 -10.59 9.17 22.39 0.21 -10.38 16 28 C -0.05 -1.68 9.69 22.25 0.22 -1.46 16 29 H 0.08 0.25 8.14 -2.38 -0.02 0.23 16 30 H 0.05 0.45 7.93 -2.39 -0.02 0.44 16 31 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.06 0.93 8.05 -2.39 -0.02 0.92 16 33 H 0.09 0.72 8.14 -2.39 -0.02 0.71 16 34 H 0.42 1.59 8.36 -92.71 -0.78 0.81 16 35 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.34 6.08 8.72 -89.69 -0.78 5.30 16 42 H 0.08 1.59 8.08 -2.39 -0.02 1.57 16 43 H 0.05 0.85 8.08 -2.39 -0.02 0.83 16 44 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 45 H 0.11 4.63 8.06 -2.91 -0.02 4.60 16 46 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 47 H 0.12 5.14 5.64 -2.91 -0.02 5.13 16 48 H 0.14 3.81 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -78.42 408.04 1.57 -76.86 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: -0.58 Total: 23.62 kcal Atomic # 6 Polarization: -37.41 SS G_CDS: 5.28 Total: -32.13 kcal Atomic # 7 Polarization: -76.24 SS G_CDS: -5.64 Total: -81.88 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -0.27 Total: -28.70 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.75 Total: -2.55 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -78.42 1.57 -76.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164021116.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.771 kcal (2) G-P(sol) polarization free energy of solvation -78.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds