Wall clock time and date at job start Tue Mar 31 2020 20:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47112 * 2 1 4 4 H 1.09006 * 109.47415 * 305.00001 * 3 2 1 5 5 F 1.39896 * 109.47391 * 65.00190 * 3 2 1 6 6 C 1.50703 * 109.47087 * 185.00201 * 3 2 1 7 7 O 1.21278 * 120.00099 * 315.00182 * 6 3 2 8 8 N 1.34781 * 119.99983 * 134.72684 * 6 3 2 9 9 C 1.46492 * 119.99734 * 180.02562 * 8 6 3 10 10 C 1.53005 * 109.46761 * 179.97438 * 9 8 6 11 11 C 1.53003 * 109.47036 * 180.02562 * 10 9 8 12 12 N 1.46893 * 109.47202 * 179.97438 * 11 10 9 13 13 C 1.46905 * 111.00063 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.47185 * 180.02562 * 13 12 11 15 15 C 1.38307 * 119.92905 * 269.72965 * 14 13 12 16 16 C 1.38098 * 120.06634 * 179.72424 * 15 14 13 17 17 C 1.38882 * 119.93143 * 0.56676 * 16 15 14 18 18 O 1.35750 * 120.06786 * 179.68178 * 17 16 15 19 19 C 1.34836 * 116.99876 * 174.49077 * 18 17 16 20 20 H 1.08002 * 119.99791 * 5.04940 * 19 18 17 21 21 C 1.38650 * 119.99919 * 185.05863 * 19 18 17 22 22 N 1.31555 * 120.00236 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99642 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47508 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46742 * 120.00083 * 23 21 19 26 26 H 1.48501 * 109.46907 * 239.99657 * 23 21 19 27 27 C 1.38881 * 119.85794 * 359.70529 * 17 16 15 28 28 C 1.38094 * 119.93509 * 359.97438 * 27 17 16 29 29 H 1.09003 * 109.47539 * 59.99810 * 1 2 3 30 30 H 1.09006 * 109.47566 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47039 * 299.99680 * 1 2 3 32 32 H 1.09001 * 109.46556 * 240.00303 * 2 1 3 33 33 H 1.08997 * 109.47055 * 120.00702 * 2 1 3 34 34 H 0.97005 * 119.99803 * 359.97438 * 8 6 3 35 35 H 1.08996 * 109.47704 * 299.99484 * 9 8 6 36 36 H 1.09004 * 109.47505 * 60.00055 * 9 8 6 37 37 H 1.09005 * 109.47286 * 299.99684 * 10 9 8 38 38 H 1.08993 * 109.47290 * 60.00071 * 10 9 8 39 39 H 1.08997 * 109.46947 * 300.00230 * 11 10 9 40 40 H 1.09004 * 109.47398 * 60.00157 * 11 10 9 41 41 H 1.00896 * 111.00350 * 303.95718 * 12 11 10 42 42 H 1.09001 * 109.47230 * 299.99967 * 13 12 11 43 43 H 1.08994 * 109.47217 * 60.00408 * 13 12 11 44 44 H 1.07995 * 119.96247 * 359.97438 * 15 14 13 45 45 H 1.08002 * 120.03607 * 180.27035 * 16 15 14 46 46 H 0.96998 * 120.00104 * 179.97438 * 22 21 19 47 47 H 1.08002 * 120.03001 * 179.97438 * 27 17 16 48 48 H 1.07999 * 119.96830 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 9 1.6700 2.0679 1.1954 6 6 3.5419 1.4442 -0.1239 7 8 4.2064 0.6810 0.5445 8 7 4.1464 2.2902 -0.9815 9 6 5.6063 2.2915 -1.1023 10 6 6.0315 3.3363 -2.1361 11 6 7.5563 3.3373 -2.2628 12 7 7.9645 4.3399 -3.2557 13 6 9.4257 4.3696 -3.4038 14 6 9.8059 5.4079 -4.4278 15 6 9.9146 5.0552 -5.7607 16 6 10.2572 6.0057 -6.7021 17 6 10.5042 7.3142 -6.3077 18 8 10.8475 8.2493 -7.2300 19 6 10.9616 9.5216 -6.7985 20 1 10.8626 9.7460 -5.7467 21 6 11.2057 10.5418 -7.7051 22 7 11.3266 10.2684 -8.9863 23 14 11.3630 12.3046 -7.1073 24 1 11.1875 12.3451 -5.6334 25 1 12.7066 12.8291 -7.4609 26 1 10.3195 13.1411 -7.7528 27 6 10.3997 7.6639 -4.9677 28 6 10.0502 6.7103 -4.0319 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.6146 2.8976 -1.5193 35 1 6.0506 2.5335 -0.1369 36 1 5.9454 1.3060 -1.4216 37 1 5.5873 3.0939 -3.1016 38 1 5.6924 4.3218 -1.8173 39 1 8.0008 3.5793 -1.2975 40 1 7.8950 2.3516 -2.5819 41 1 7.5141 4.1741 -4.1432 42 1 9.8830 4.6195 -2.4464 43 1 9.7778 3.3911 -3.7302 44 1 9.7274 4.0364 -6.0660 45 1 10.3377 5.7306 -7.7435 46 1 11.4971 10.9822 -9.6205 47 1 10.5915 8.6805 -4.6579 48 1 9.9684 6.9818 -2.9898 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164021118.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:26 Heat of formation + Delta-G solvation = -105.499293 kcal Electronic energy + Delta-G solvation = -26956.944823 eV Core-core repulsion = 22733.258945 eV Total energy + Delta-G solvation = -4223.685878 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.37566 -40.10360 -39.10660 -37.44678 -36.44496 -35.10127 -34.53021 -32.47999 -31.90542 -30.19318 -29.49124 -28.12773 -25.87026 -25.05276 -23.45376 -22.43655 -22.04534 -21.93279 -20.93918 -20.38456 -18.22902 -18.00095 -17.44250 -16.96526 -16.58760 -16.44029 -15.81609 -15.49386 -15.14831 -14.77606 -14.58811 -14.50472 -14.46288 -14.21881 -14.00949 -13.59264 -13.49294 -13.36428 -13.12377 -12.84412 -12.70386 -12.62767 -12.45799 -12.20869 -12.02044 -11.77293 -11.66296 -11.58919 -11.44497 -11.27646 -11.21260 -10.81391 -10.69448 -10.56011 -10.43538 -10.24907 -9.64499 -9.34421 -8.85959 -8.45542 -8.18990 -7.20859 -6.47045 -4.05815 1.91115 2.19765 2.25388 2.43928 3.10976 3.12931 3.18416 3.84089 3.93978 3.95213 4.04335 4.08886 4.31395 4.56834 4.57905 4.75300 4.79534 4.85591 4.86717 5.07534 5.08155 5.15045 5.22775 5.25840 5.33951 5.35773 5.39720 5.43175 5.51716 5.64826 5.69951 5.74672 5.75250 5.82777 5.87184 5.88414 6.19473 6.41031 6.67847 6.83404 6.88358 6.95032 7.07754 7.18442 7.35599 7.40660 7.44297 7.54543 7.80982 7.98309 8.98904 9.68664 10.71028 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020571 B = 0.001352 C = 0.001316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.831245 B =20711.926645 C =21269.663278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.141 4.141 3 C 0.083 3.917 4 H 0.101 0.899 5 F -0.189 7.189 6 C 0.490 3.510 7 O -0.520 6.520 8 N -0.720 5.720 9 C 0.118 3.882 10 C -0.130 4.130 11 C 0.061 3.939 12 N -0.686 5.686 13 C 0.119 3.881 14 C -0.187 4.187 15 C -0.069 4.069 16 C -0.194 4.194 17 C 0.156 3.844 18 O -0.178 6.178 19 C -0.391 4.391 20 H 0.093 0.907 21 C 0.039 3.961 22 N -0.862 5.862 23 Si 0.941 3.059 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.235 4.235 28 C -0.048 4.048 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.405 0.595 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.030 0.970 41 H 0.342 0.658 42 H 0.070 0.930 43 H 0.028 0.972 44 H 0.107 0.893 45 H 0.116 0.884 46 H 0.269 0.731 47 H 0.127 0.873 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.585 -17.578 14.772 28.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.179 4.179 3 C 0.044 3.956 4 H 0.119 0.881 5 F -0.170 7.170 6 C 0.273 3.727 7 O -0.395 6.395 8 N -0.373 5.373 9 C -0.006 4.006 10 C -0.168 4.168 11 C -0.069 4.069 12 N -0.317 5.317 13 C -0.009 4.009 14 C -0.188 4.188 15 C -0.087 4.087 16 C -0.213 4.213 17 C 0.102 3.898 18 O -0.082 6.082 19 C -0.468 4.468 20 H 0.110 0.890 21 C -0.165 4.165 22 N -0.497 5.497 23 Si 0.766 3.234 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.255 4.255 28 C -0.067 4.067 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.239 0.761 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.048 0.952 41 H 0.160 0.840 42 H 0.089 0.911 43 H 0.047 0.953 44 H 0.125 0.875 45 H 0.134 0.866 46 H 0.079 0.921 47 H 0.144 0.856 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -16.995 -17.478 15.285 28.774 hybrid contribution 0.007 0.528 -0.443 0.689 sum -16.988 -16.951 14.842 28.217 Atomic orbital electron populations 1.21783 0.93968 1.02800 1.02608 1.21998 0.97435 0.93396 1.05109 1.21637 0.91785 0.96476 0.85707 0.88140 1.92896 1.92004 1.83873 1.48214 1.21017 0.90470 0.80893 0.80276 1.90750 1.66140 1.39010 1.43607 1.46088 1.08600 1.39816 1.42761 1.21408 0.79025 1.00013 1.00164 1.21771 0.96751 0.99489 0.98833 1.21814 0.93929 0.93652 0.97490 1.60538 1.08065 1.50075 1.13017 1.20612 0.86779 0.95675 0.97850 1.19105 1.11313 0.94829 0.93598 1.20475 0.98508 0.97539 0.92227 1.20168 1.10166 0.91472 0.99514 1.19405 0.91439 0.90036 0.88929 1.83977 1.74361 1.16425 1.33401 1.21389 1.50826 0.79988 0.94571 0.88969 1.25290 0.96582 0.99763 0.94859 1.70046 1.44951 1.33431 1.01318 0.85648 0.78287 0.80564 0.78944 1.19065 1.20141 1.20129 1.21174 1.10655 1.00641 0.92997 1.20570 0.95995 0.92076 0.98067 0.92242 0.91595 0.91844 0.89743 0.89390 0.76060 0.90955 0.91155 0.91191 0.90046 0.90778 0.95222 0.84005 0.91123 0.95346 0.87514 0.86623 0.92066 0.85581 0.87492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 9.83 37.16 0.37 -0.26 16 2 C -0.14 -0.77 5.41 -26.73 -0.14 -0.91 16 3 C 0.08 0.51 3.77 -27.89 -0.11 0.40 16 4 H 0.10 0.28 7.99 -51.93 -0.42 -0.13 16 5 F -0.19 -1.64 16.75 2.25 0.04 -1.61 16 6 C 0.49 4.16 7.17 -10.98 -0.08 4.08 16 7 O -0.52 -6.55 16.61 5.56 0.09 -6.45 16 8 N -0.72 -4.52 5.56 -60.29 -0.33 -4.86 16 9 C 0.12 0.82 5.67 -4.04 -0.02 0.80 16 10 C -0.13 -0.86 5.59 -26.73 -0.15 -1.01 16 11 C 0.06 0.52 5.69 -3.83 -0.02 0.49 16 12 N -0.69 -7.67 6.49 -115.06 -0.75 -8.42 16 13 C 0.12 1.51 5.81 -4.97 -0.03 1.48 16 14 C -0.19 -3.06 5.40 -104.57 -0.56 -3.63 16 15 C -0.07 -1.17 9.69 -39.61 -0.38 -1.56 16 16 C -0.19 -4.01 9.99 -39.39 -0.39 -4.40 16 17 C 0.16 3.73 6.65 -39.10 -0.26 3.47 16 18 O -0.18 -5.07 9.76 0.03 0.00 -5.07 16 19 C -0.39 -10.88 9.49 30.88 0.29 -10.59 16 20 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 21 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 22 N -0.86 -25.13 13.67 55.48 0.76 -24.37 16 23 Si 0.94 20.38 29.55 -169.99 -5.02 15.36 16 24 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 25 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 26 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 27 C -0.24 -5.07 9.17 -39.40 -0.36 -5.43 16 28 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 29 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.30 7.94 -51.93 -0.41 -0.11 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.62 8.05 -51.93 -0.42 0.20 16 34 H 0.40 1.43 8.36 -40.82 -0.34 1.08 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.34 3.74 8.72 -39.29 -0.34 3.39 16 42 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 43 H 0.03 0.33 8.08 -51.93 -0.42 -0.09 16 44 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 45 H 0.12 2.32 8.06 -52.49 -0.42 1.89 16 46 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 47 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 48 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 408.04 15.07 6.15 6.15 Total: -1.00 -33.28 408.04 -8.95 -42.23 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -7.55 Total: 4.37 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: -2.34 Total: -17.34 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: -0.32 Total: -37.65 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.52 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.28 -8.95 -42.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164021118.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.265 kcal (2) G-P(sol) polarization free energy of solvation -33.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds