Wall clock time and date at job start Tue Mar 31 2020 22:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35648 * 117.00056 * 2 1 4 4 C 1.38636 * 120.14050 * 0.23535 * 3 2 1 5 5 C 1.38135 * 120.15508 * 180.30318 * 4 3 2 6 6 C 1.38411 * 120.43490 * 359.71254 * 5 4 3 7 7 C 1.38126 * 120.27310 * 0.02562 * 6 5 4 8 8 F 1.35100 * 120.08316 * 179.97438 * 7 6 5 9 9 C 1.39961 * 119.83705 * 359.97438 * 7 6 5 10 10 C 1.47394 * 120.21507 * 179.97438 * 9 7 6 11 11 O 1.21603 * 119.99971 * 89.99809 * 10 9 7 12 12 N 1.34777 * 120.00073 * 270.00320 * 10 9 7 13 13 C 1.46498 * 119.99828 * 180.27558 * 12 10 9 14 14 H 1.09004 * 109.47372 * 34.71852 * 13 12 10 15 15 C 1.52997 * 109.47036 * 274.72131 * 13 12 10 16 16 C 1.52999 * 109.46963 * 154.72290 * 13 12 10 17 17 C 1.52997 * 109.47080 * 294.99494 * 16 13 12 18 18 C 1.53003 * 109.47411 * 180.02562 * 17 16 13 19 19 C 1.52997 * 109.47411 * 179.97438 * 18 17 16 20 20 N 1.46505 * 109.46938 * 179.97438 * 19 18 17 21 21 C 1.36935 * 119.99721 * 180.02562 * 20 19 18 22 22 H 1.08007 * 120.00287 * 359.97438 * 21 20 19 23 23 C 1.38812 * 120.00196 * 180.02562 * 21 20 19 24 24 N 1.31618 * 119.99660 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00438 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46757 * 89.99429 * 25 23 21 27 27 H 1.48497 * 109.47059 * 209.99496 * 25 23 21 28 28 H 1.48499 * 109.46945 * 329.99854 * 25 23 21 29 29 H 1.08998 * 109.46831 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46894 * 300.00095 * 1 2 3 31 31 H 1.08998 * 109.46664 * 60.00385 * 1 2 3 32 32 H 1.08000 * 119.91728 * 0.02562 * 4 3 2 33 33 H 1.08000 * 119.77597 * 179.69686 * 5 4 3 34 34 H 1.07998 * 119.86205 * 180.02562 * 6 5 4 35 35 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 36 36 H 1.09003 * 109.47189 * 180.02562 * 15 13 12 37 37 H 1.09009 * 109.47238 * 300.00198 * 15 13 12 38 38 H 1.08997 * 109.47293 * 60.00168 * 15 13 12 39 39 H 1.08997 * 109.47492 * 54.99915 * 16 13 12 40 40 H 1.09007 * 109.47243 * 174.99697 * 16 13 12 41 41 H 1.09002 * 109.47641 * 299.99883 * 17 16 13 42 42 H 1.08998 * 109.46968 * 60.00255 * 17 16 13 43 43 H 1.09002 * 109.46933 * 300.00830 * 18 17 16 44 44 H 1.09007 * 109.47158 * 60.00052 * 18 17 16 45 45 H 1.08997 * 109.47193 * 299.99893 * 19 18 17 46 46 H 1.08998 * 109.46968 * 60.00156 * 19 18 17 47 47 H 0.96995 * 119.99983 * 0.02562 * 20 19 18 48 48 H 0.97003 * 120.00102 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2927 2.3732 0.0049 5 6 1.9195 3.6041 -0.0014 6 6 3.3011 3.6874 -0.0067 7 6 4.0679 2.5386 -0.0062 8 9 5.4162 2.6243 -0.0119 9 6 3.4448 1.2854 0.0001 10 6 4.2550 0.0541 0.0001 11 8 4.5939 -0.4508 1.0532 12 7 4.6203 -0.5122 -1.1671 13 6 5.4204 -1.7394 -1.1670 14 1 5.1306 -2.3621 -0.3207 15 6 6.9034 -1.3812 -1.0524 16 6 5.1800 -2.5050 -2.4697 17 6 3.7239 -2.9714 -2.5257 18 6 3.4835 -3.7376 -3.8281 19 6 2.0275 -4.2045 -3.8839 20 7 1.7973 -4.9376 -5.1312 21 6 0.5585 -5.4538 -5.4032 22 1 -0.2487 -5.3209 -4.6981 23 6 0.3404 -6.1490 -6.5848 24 7 1.3242 -6.3114 -7.4439 25 14 -1.3493 -6.8538 -6.9557 26 1 -2.1556 -5.8460 -7.6903 27 1 -1.2045 -8.0746 -7.7886 28 1 -2.0311 -7.2008 -5.6829 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 0.2141 2.3177 0.0092 33 1 1.3275 4.5074 -0.0025 34 1 3.7815 4.6547 -0.0112 35 1 4.3497 -0.1096 -2.0071 36 1 7.4989 -2.2942 -1.0528 37 1 7.1933 -0.7584 -1.8987 38 1 7.0748 -0.8357 -0.1244 39 1 5.3854 -1.8523 -3.3181 40 1 5.8406 -3.3711 -2.5094 41 1 3.5184 -3.6242 -1.6774 42 1 3.0632 -2.1053 -2.4861 43 1 3.6891 -3.0852 -4.6767 44 1 4.1441 -4.6037 -3.8673 45 1 1.8225 -4.8571 -3.0353 46 1 1.3666 -3.3387 -3.8445 47 1 2.5224 -5.0574 -5.7643 48 1 1.1718 -6.7969 -8.2698 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170943498.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:45 Heat of formation + Delta-G solvation = -99.397673 kcal Electronic energy + Delta-G solvation = -29129.162764 eV Core-core repulsion = 24905.741472 eV Total energy + Delta-G solvation = -4223.421292 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.37679 -40.87141 -39.51514 -37.65378 -36.85137 -35.21177 -33.24971 -32.23416 -31.00299 -30.41600 -30.07763 -27.76618 -27.40552 -24.78726 -24.04276 -22.70260 -22.21280 -21.19447 -20.71660 -20.57535 -18.98843 -17.85813 -17.48217 -16.99480 -16.70643 -16.45191 -16.18542 -15.79402 -15.56238 -15.06446 -14.98849 -14.78006 -14.60698 -14.14827 -13.87150 -13.50605 -13.26597 -13.14330 -12.93330 -12.90113 -12.84147 -12.80145 -12.33914 -12.21788 -11.77193 -11.71430 -11.50013 -11.40661 -11.23046 -10.96878 -10.79803 -10.66632 -10.40027 -10.26156 -10.10095 -9.97067 -9.65149 -9.36317 -9.17610 -8.84584 -8.80926 -6.88753 -5.74321 -3.02540 0.46672 0.74487 2.38821 2.63619 2.88389 3.09457 3.44017 3.48748 3.50971 3.83668 4.20257 4.40760 4.47133 4.54984 4.60857 4.69930 4.77728 4.81036 4.83187 4.96640 5.05050 5.22048 5.31208 5.33652 5.46160 5.50300 5.51851 5.56817 5.57369 5.67234 5.75093 5.77402 5.83306 5.96157 6.02008 6.13895 6.16983 6.27636 6.35462 6.41743 6.44147 6.51435 6.79492 6.92970 6.96980 7.33210 7.71389 8.03788 8.45189 9.55734 10.15589 10.50228 11.48906 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012277 B = 0.002418 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.228584 B =11575.119706 C =13126.911946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.301 6.301 3 C 0.194 3.806 4 C -0.222 4.222 5 C -0.033 4.033 6 C -0.195 4.195 7 C 0.171 3.829 8 F -0.125 7.125 9 C -0.201 4.201 10 C 0.579 3.421 11 O -0.528 6.528 12 N -0.709 5.709 13 C 0.140 3.860 14 H 0.090 0.910 15 C -0.163 4.163 16 C -0.126 4.126 17 C -0.114 4.114 18 C -0.125 4.125 19 C 0.153 3.847 20 N -0.735 5.735 21 C -0.237 4.237 22 H 0.069 0.931 23 C -0.016 4.016 24 N -0.935 5.935 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.109 0.891 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.401 0.599 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.016 0.984 46 H 0.015 0.985 47 H 0.383 0.617 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.893 22.652 16.590 28.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.212 6.212 3 C 0.146 3.854 4 C -0.241 4.241 5 C -0.052 4.052 6 C -0.214 4.214 7 C 0.151 3.849 8 F -0.103 7.103 9 C -0.206 4.206 10 C 0.364 3.636 11 O -0.403 6.403 12 N -0.360 5.360 13 C 0.036 3.964 14 H 0.108 0.892 15 C -0.221 4.221 16 C -0.164 4.164 17 C -0.152 4.152 18 C -0.163 4.163 19 C 0.026 3.974 20 N -0.379 5.379 21 C -0.369 4.369 22 H 0.087 0.913 23 C -0.212 4.212 24 N -0.584 5.584 25 Si 0.738 3.262 26 H -0.218 1.218 27 H -0.217 1.217 28 H -0.208 1.208 29 H 0.127 0.873 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.160 0.840 33 H 0.158 0.842 34 H 0.161 0.839 35 H 0.236 0.764 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.034 0.966 46 H 0.033 0.967 47 H 0.216 0.784 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.106 21.992 17.368 28.484 hybrid contribution -0.888 -0.062 -0.927 1.285 sum 4.218 21.930 16.441 27.731 Atomic orbital electron populations 1.23252 0.76867 1.05205 1.01680 1.86131 1.22497 1.25644 1.86968 1.18616 0.89768 0.85346 0.91629 1.21304 1.00922 0.91714 1.10150 1.20911 0.93448 0.97624 0.93185 1.20982 0.94343 0.97550 1.08564 1.17251 0.77091 0.92247 0.98303 1.91558 1.28633 1.96907 1.93209 1.19088 0.91952 0.93640 1.15907 1.17626 0.78687 0.83048 0.84283 1.90803 1.55123 1.63136 1.31282 1.46062 1.54238 1.27535 1.08145 1.21095 0.90393 0.85154 0.99711 0.89209 1.22178 0.95530 1.02172 1.02256 1.21936 0.98330 1.00201 0.95948 1.21515 0.95116 1.00107 0.98446 1.21727 0.98326 0.99664 0.96614 1.20635 0.92719 0.94130 0.89925 1.42399 1.11217 1.65013 1.19283 1.19249 0.88520 1.27116 1.01999 0.91272 1.24749 0.97661 1.01557 0.97250 1.69663 1.30736 1.46958 1.11040 0.86183 0.83804 0.78408 0.77786 1.21753 1.21750 1.20779 0.87264 0.92176 0.91846 0.84004 0.84152 0.83917 0.76413 0.91409 0.92419 0.92245 0.91342 0.90122 0.91978 0.92038 0.92181 0.92074 0.96587 0.96700 0.78353 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.30 -3.28 9.95 -18.64 -0.19 -3.47 16 3 C 0.19 1.98 6.70 -38.70 -0.26 1.73 16 4 C -0.22 -1.59 9.03 -39.47 -0.36 -1.95 16 5 C -0.03 -0.20 10.02 -39.56 -0.40 -0.60 16 6 C -0.20 -1.42 10.00 -39.56 -0.40 -1.81 16 7 C 0.17 1.74 7.29 -38.98 -0.28 1.46 16 8 F -0.12 -1.40 16.83 2.25 0.04 -1.36 16 9 C -0.20 -2.33 5.64 -104.79 -0.59 -2.92 16 10 C 0.58 7.89 6.40 -12.53 -0.08 7.81 16 11 O -0.53 -9.07 16.77 5.27 0.09 -8.98 16 12 N -0.71 -8.04 4.53 -54.89 -0.25 -8.29 16 13 C 0.14 1.56 2.58 -67.93 -0.17 1.39 16 14 H 0.09 1.16 7.57 -51.93 -0.39 0.77 16 15 C -0.16 -1.64 9.49 37.16 0.35 -1.28 16 16 C -0.13 -1.34 4.75 -26.73 -0.13 -1.47 16 17 C -0.11 -1.49 5.10 -26.73 -0.14 -1.62 16 18 C -0.13 -2.04 5.33 -26.73 -0.14 -2.19 16 19 C 0.15 3.19 6.26 -4.04 -0.03 3.17 16 20 N -0.74 -19.31 5.60 -59.91 -0.34 -19.64 16 21 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 22 H 0.07 1.93 7.83 -52.48 -0.41 1.51 16 23 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 24 N -0.93 -28.78 13.06 55.49 0.72 -28.06 16 25 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 29 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.31 7.65 -51.93 -0.40 -0.09 16 31 H 0.06 0.35 7.67 -51.93 -0.40 -0.05 16 32 H 0.14 0.67 6.29 -52.49 -0.33 0.34 16 33 H 0.14 0.40 8.06 -52.49 -0.42 -0.03 16 34 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 35 H 0.40 3.86 8.59 -40.82 -0.35 3.51 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.80 7.75 -51.93 -0.40 0.40 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.38 10.50 7.67 -40.82 -0.31 10.19 16 48 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 406.50 15.07 6.13 6.13 Total: -1.00 -35.64 406.50 -8.32 -43.95 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -7.63 Total: 6.80 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -1.87 Total: -4.70 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: 0.14 Total: -55.99 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -0.10 Total: -12.45 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.64 -8.32 -43.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170943498.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.445 kcal (2) G-P(sol) polarization free energy of solvation -35.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds