Wall clock time and date at job start Tue Mar 31 2020 22:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35648 * 117.00056 * 2 1 4 4 C 1.38636 * 120.14050 * 0.23535 * 3 2 1 5 5 C 1.38135 * 120.15508 * 180.30318 * 4 3 2 6 6 C 1.38411 * 120.43490 * 359.71254 * 5 4 3 7 7 C 1.38126 * 120.27310 * 0.02562 * 6 5 4 8 8 F 1.35100 * 120.08316 * 179.97438 * 7 6 5 9 9 C 1.39961 * 119.83705 * 359.97438 * 7 6 5 10 10 C 1.47394 * 120.21507 * 179.97438 * 9 7 6 11 11 O 1.21603 * 119.99971 * 89.99809 * 10 9 7 12 12 N 1.34777 * 120.00073 * 270.00320 * 10 9 7 13 13 C 1.46498 * 119.99828 * 180.27558 * 12 10 9 14 14 H 1.09004 * 109.47372 * 34.71852 * 13 12 10 15 15 C 1.52997 * 109.47036 * 274.72131 * 13 12 10 16 16 C 1.52999 * 109.46963 * 154.72290 * 13 12 10 17 17 C 1.52997 * 109.47080 * 294.99494 * 16 13 12 18 18 C 1.53003 * 109.47411 * 180.02562 * 17 16 13 19 19 C 1.52997 * 109.47411 * 179.97438 * 18 17 16 20 20 N 1.46505 * 109.46938 * 179.97438 * 19 18 17 21 21 C 1.36935 * 119.99721 * 180.02562 * 20 19 18 22 22 H 1.08007 * 120.00287 * 359.97438 * 21 20 19 23 23 C 1.38812 * 120.00196 * 180.02562 * 21 20 19 24 24 N 1.31618 * 119.99660 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00438 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46757 * 89.99429 * 25 23 21 27 27 H 1.48497 * 109.47059 * 209.99496 * 25 23 21 28 28 H 1.48499 * 109.46945 * 329.99854 * 25 23 21 29 29 H 1.08998 * 109.46831 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46894 * 300.00095 * 1 2 3 31 31 H 1.08998 * 109.46664 * 60.00385 * 1 2 3 32 32 H 1.08000 * 119.91728 * 0.02562 * 4 3 2 33 33 H 1.08000 * 119.77597 * 179.69686 * 5 4 3 34 34 H 1.07998 * 119.86205 * 180.02562 * 6 5 4 35 35 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 36 36 H 1.09003 * 109.47189 * 180.02562 * 15 13 12 37 37 H 1.09009 * 109.47238 * 300.00198 * 15 13 12 38 38 H 1.08997 * 109.47293 * 60.00168 * 15 13 12 39 39 H 1.08997 * 109.47492 * 54.99915 * 16 13 12 40 40 H 1.09007 * 109.47243 * 174.99697 * 16 13 12 41 41 H 1.09002 * 109.47641 * 299.99883 * 17 16 13 42 42 H 1.08998 * 109.46968 * 60.00255 * 17 16 13 43 43 H 1.09002 * 109.46933 * 300.00830 * 18 17 16 44 44 H 1.09007 * 109.47158 * 60.00052 * 18 17 16 45 45 H 1.08997 * 109.47193 * 299.99893 * 19 18 17 46 46 H 1.08998 * 109.46968 * 60.00156 * 19 18 17 47 47 H 0.96995 * 119.99983 * 0.02562 * 20 19 18 48 48 H 0.97003 * 120.00102 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2927 2.3732 0.0049 5 6 1.9195 3.6041 -0.0014 6 6 3.3011 3.6874 -0.0067 7 6 4.0679 2.5386 -0.0062 8 9 5.4162 2.6243 -0.0119 9 6 3.4448 1.2854 0.0001 10 6 4.2550 0.0541 0.0001 11 8 4.5939 -0.4508 1.0532 12 7 4.6203 -0.5122 -1.1671 13 6 5.4204 -1.7394 -1.1670 14 1 5.1306 -2.3621 -0.3207 15 6 6.9034 -1.3812 -1.0524 16 6 5.1800 -2.5050 -2.4697 17 6 3.7239 -2.9714 -2.5257 18 6 3.4835 -3.7376 -3.8281 19 6 2.0275 -4.2045 -3.8839 20 7 1.7973 -4.9376 -5.1312 21 6 0.5585 -5.4538 -5.4032 22 1 -0.2487 -5.3209 -4.6981 23 6 0.3404 -6.1490 -6.5848 24 7 1.3242 -6.3114 -7.4439 25 14 -1.3493 -6.8538 -6.9557 26 1 -2.1556 -5.8460 -7.6903 27 1 -1.2045 -8.0746 -7.7886 28 1 -2.0311 -7.2008 -5.6829 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 0.2141 2.3177 0.0092 33 1 1.3275 4.5074 -0.0025 34 1 3.7815 4.6547 -0.0112 35 1 4.3497 -0.1096 -2.0071 36 1 7.4989 -2.2942 -1.0528 37 1 7.1933 -0.7584 -1.8987 38 1 7.0748 -0.8357 -0.1244 39 1 5.3854 -1.8523 -3.3181 40 1 5.8406 -3.3711 -2.5094 41 1 3.5184 -3.6242 -1.6774 42 1 3.0632 -2.1053 -2.4861 43 1 3.6891 -3.0852 -4.6767 44 1 4.1441 -4.6037 -3.8673 45 1 1.8225 -4.8571 -3.0353 46 1 1.3666 -3.3387 -3.8445 47 1 2.5224 -5.0574 -5.7643 48 1 1.1718 -6.7969 -8.2698 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170943498.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:44 Heat of formation + Delta-G solvation = -122.882309 kcal Electronic energy + Delta-G solvation = -29130.181134 eV Core-core repulsion = 24905.741472 eV Total energy + Delta-G solvation = -4224.439662 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.14123 -41.62828 -40.40979 -38.32944 -37.98008 -36.83910 -34.80610 -33.33085 -32.40772 -31.22784 -31.01523 -28.84338 -28.31432 -26.03457 -25.32962 -23.69276 -23.32432 -22.22385 -22.01505 -21.61611 -19.69412 -19.13031 -18.64399 -18.18389 -17.64171 -17.12630 -16.94816 -16.69446 -16.50293 -16.34490 -16.15435 -15.70344 -15.68101 -15.41711 -15.24443 -14.99508 -14.62584 -14.22284 -14.11134 -13.86815 -13.46124 -13.44276 -13.28179 -13.06513 -12.90487 -12.87193 -12.83797 -12.48578 -12.37709 -12.28685 -12.16542 -12.05086 -11.89993 -11.85173 -11.52272 -11.43180 -11.09535 -10.94455 -10.18258 -10.03822 -9.43572 -9.02388 -7.96853 -5.26393 -0.17407 0.13227 1.39559 1.46231 1.48650 1.57282 2.02248 2.08936 2.42379 2.55044 3.20059 3.36484 3.48727 3.61198 3.84058 3.88162 3.99711 4.00949 4.02929 4.12502 4.23922 4.31170 4.32914 4.37534 4.38020 4.57517 4.62125 4.70657 4.73160 4.75691 4.84625 4.89564 4.95266 4.96052 4.98291 5.04549 5.09287 5.22877 5.23377 5.27601 5.40250 5.44847 5.51073 5.52184 5.57996 6.19473 6.25882 6.39518 7.07286 7.31478 8.07731 8.31694 9.26966 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012277 B = 0.002418 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.228584 B =11575.119706 C =13126.911946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.333 6.333 3 C 0.177 3.823 4 C -0.215 4.215 5 C -0.020 4.020 6 C -0.187 4.187 7 C 0.149 3.851 8 F -0.139 7.139 9 C -0.231 4.231 10 C 0.576 3.424 11 O -0.576 6.576 12 N -0.700 5.700 13 C 0.141 3.859 14 H 0.068 0.932 15 C -0.156 4.156 16 C -0.115 4.115 17 C -0.103 4.103 18 C -0.112 4.112 19 C 0.151 3.849 20 N -0.749 5.749 21 C -0.250 4.250 22 H 0.074 0.926 23 C -0.077 4.077 24 N -0.971 5.971 25 Si 0.976 3.024 26 H -0.284 1.284 27 H -0.294 1.294 28 H -0.270 1.270 29 H 0.107 0.893 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.170 0.830 33 H 0.183 0.817 34 H 0.168 0.832 35 H 0.410 0.590 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.039 0.961 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.054 0.946 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.013 0.987 46 H 0.017 0.983 47 H 0.374 0.626 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.496 24.660 16.516 29.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.246 6.246 3 C 0.130 3.870 4 C -0.234 4.234 5 C -0.038 4.038 6 C -0.206 4.206 7 C 0.129 3.871 8 F -0.117 7.117 9 C -0.235 4.235 10 C 0.362 3.638 11 O -0.456 6.456 12 N -0.350 5.350 13 C 0.037 3.963 14 H 0.086 0.914 15 C -0.215 4.215 16 C -0.153 4.153 17 C -0.141 4.141 18 C -0.149 4.149 19 C 0.024 3.976 20 N -0.392 5.392 21 C -0.381 4.381 22 H 0.092 0.908 23 C -0.269 4.269 24 N -0.621 5.621 25 Si 0.805 3.195 26 H -0.211 1.211 27 H -0.220 1.220 28 H -0.194 1.194 29 H 0.125 0.875 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.187 0.813 33 H 0.200 0.800 34 H 0.186 0.814 35 H 0.246 0.754 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.058 0.942 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.031 0.969 46 H 0.035 0.965 47 H 0.206 0.794 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.699 24.027 17.299 29.837 hybrid contribution -0.496 -0.630 -0.863 1.178 sum 3.203 23.397 16.436 28.772 Atomic orbital electron populations 1.23475 0.75188 1.05735 1.03326 1.86079 1.24448 1.26693 1.87331 1.18837 0.89461 0.86189 0.92562 1.21679 1.02160 0.90994 1.08534 1.21426 0.93079 0.98644 0.90639 1.21357 0.94952 0.97425 1.06877 1.17565 0.76804 0.92846 0.99863 1.91515 1.29717 1.96970 1.93537 1.19123 0.92696 0.93153 1.18559 1.18063 0.78251 0.83548 0.83941 1.90757 1.57208 1.64788 1.32877 1.46063 1.53569 1.27282 1.08134 1.21067 0.91144 0.84916 0.99133 0.91400 1.22115 0.94736 1.02876 1.01735 1.21844 0.96634 1.00760 0.96045 1.21395 0.96941 0.99498 0.96301 1.21592 0.95146 0.99878 0.98329 1.20817 0.95754 0.93442 0.87559 1.42636 1.10300 1.65502 1.20737 1.19658 0.89592 1.26765 1.02113 0.90807 1.25627 1.01605 1.02429 0.97260 1.69821 1.32867 1.48017 1.11419 0.85099 0.79258 0.77346 0.77826 1.21058 1.22009 1.19442 0.87461 0.90300 0.90316 0.81297 0.79984 0.81446 0.75356 0.89900 0.91116 0.94212 0.89805 0.89019 0.92691 0.92035 0.91905 0.92261 0.96935 0.96474 0.79435 0.93883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -7.31 9.95 -89.63 -0.89 -8.20 16 3 C 0.18 3.53 6.70 22.84 0.15 3.68 16 4 C -0.22 -2.51 9.03 22.34 0.20 -2.31 16 5 C -0.02 -0.17 10.02 22.29 0.22 0.06 16 6 C -0.19 -2.27 10.00 22.28 0.22 -2.05 16 7 C 0.15 3.00 7.29 22.66 0.17 3.17 16 8 F -0.14 -3.20 16.83 44.97 0.76 -2.45 16 9 C -0.23 -5.47 5.64 -19.97 -0.11 -5.58 16 10 C 0.58 16.54 6.40 86.65 0.55 17.09 16 11 O -0.58 -21.23 16.77 -4.04 -0.07 -21.30 16 12 N -0.70 -16.29 4.53 -445.84 -2.02 -18.31 16 13 C 0.14 3.17 2.58 44.99 0.12 3.28 16 14 H 0.07 1.84 7.57 -2.39 -0.02 1.83 16 15 C -0.16 -3.10 9.49 71.98 0.68 -2.42 16 16 C -0.12 -2.32 4.75 30.59 0.15 -2.17 16 17 C -0.10 -2.63 5.10 30.59 0.16 -2.48 16 18 C -0.11 -3.56 5.33 30.59 0.16 -3.40 16 19 C 0.15 6.25 6.26 86.38 0.54 6.79 16 20 N -0.75 -39.55 5.60 -343.45 -1.92 -41.48 16 21 C -0.25 -14.34 9.99 84.03 0.84 -13.50 16 22 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 23 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 24 N -0.97 -60.23 13.06 21.65 0.28 -59.94 16 25 Si 0.98 46.41 29.55 68.60 2.03 48.44 16 26 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 27 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 28 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 29 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.08 0.66 7.65 -2.39 -0.02 0.64 16 31 H 0.08 0.72 7.67 -2.39 -0.02 0.70 16 32 H 0.17 0.97 6.29 -2.91 -0.02 0.95 16 33 H 0.18 0.00 8.06 -2.91 -0.02 -0.02 16 34 H 0.17 1.14 8.06 -2.91 -0.02 1.11 16 35 H 0.41 7.90 8.59 -92.71 -0.80 7.10 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 38 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 41 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.06 1.58 7.75 -2.39 -0.02 1.56 16 43 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 45 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 46 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.37 20.77 7.67 -92.71 -0.71 20.06 16 48 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -79.39 406.50 3.26 -76.12 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: -0.53 Total: 29.68 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: 5.63 Total: -2.56 kcal Atomic # 7 Polarization: -116.07 SS G_CDS: -3.66 Total: -119.73 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.96 Total: -29.51 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.76 Total: -2.45 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -79.39 3.26 -76.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170943498.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.758 kcal (2) G-P(sol) polarization free energy of solvation -79.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds